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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943710
Clone id YMU02A01NGRL0003_L05
Library
Length 344
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_L05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AATGACTGCTCACATTTTTTTCATGTATCAACATGAGAAACTGCTGCAATTGATAATAAT
AAGCATTGGCTGTAAAAAAAATGTCGGCCGCCTCGGCCCTCAACGTGTCGTCCGCACCGT
CCCTCTAGAACCTTTCCACACCATTCATTTGACGCGGGGCCCCACTATTTAAGAGAACAT
GCTCATAATTATTTCCGATGAGATCCTGACCATGAAAAAAGCTTGGATTCCCACCAATAA
AAAACGACAGGCGCCAACGGAGCTTTCAGAACAAAACCGGATGGATTTCTAAGGTCATTA
CCGAATCCAACATCAGAATACCCACCGACCTCCAAATCAAATTA
■■Homology search results ■■ -
sp_hit_id P03042
Definition sp|P03042|RPC2_LAMBD Regulatory protein CII OS=Enterobacteria phage lambda
Align length 36
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943710|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L05, 5'
         (344 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03042|RPC2_LAMBD Regulatory protein CII OS=Enterobacteria ph...    30   2.9  
sp|P03043|RPC2_BP434 Regulatory protein CII OS=Bacteriophage 434...    30   2.9  
sp|Q61575|FOXN1_MOUSE Forkhead box protein N1 OS=Mus musculus GN...    29   6.4  

>sp|P03042|RPC2_LAMBD Regulatory protein CII OS=Enterobacteria phage
           lambda GN=CII PE=1 SV=1
          Length = 97

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 188 IISDEI--LTMKKAWIPTNKKRQAPTELSEQNRMDF 289
           ++ D++  L  + A I TNKKR A TE SEQ +M+F
Sbjct: 62  VVDDDMARLARQVAAILTNKKRPAATERSEQIQMEF 97


>sp|P03043|RPC2_BP434 Regulatory protein CII OS=Bacteriophage 434
           GN=CII PE=3 SV=1
          Length = 97

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 188 IISDEI--LTMKKAWIPTNKKRQAPTELSEQNRMDF 289
           ++ D++  L  + A I TNKKR A TE SEQ +M+F
Sbjct: 62  VVDDDMARLARQVASILTNKKRPAATERSEQIQMEF 97


>sp|Q61575|FOXN1_MOUSE Forkhead box protein N1 OS=Mus musculus
           GN=Foxn1 PE=2 SV=1
          Length = 648

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 21/82 (25%)
 Frame = +1

Query: 121 PSRTFPHHSFDAGP---------------HYLREHAHNYFR*DPDHEKSLDSHQ*KTTGA 255
           PS  +P   F+ GP               H  + H H     +     +LD H  KT GA
Sbjct: 95  PSEKYPGFGFEEGPAGSPGRFLKGNHMPFHPYKRHFHEDIFSEAQTAMALDGHSFKTQGA 154

Query: 256 NGAFRTKP------DGFLRSLP 303
             AF   P      + FL S P
Sbjct: 155 LEAFEEIPVDMGDAEAFLPSFP 176
tr_hit_id Q2LZU6
Definition tr|Q2LZU6|Q2LZU6_DROPS GA12618 OS=Drosophila pseudoobscura pseudoobscura
Align length 62
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943710|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_L05, 5'
         (344 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2LZU6|Q2LZU6_DROPS GA12618 OS=Drosophila pseudoobscura pseud...    34   3.2  
tr|B4IMN9|B4IMN9_DROSE GM11752 OS=Drosophila sechellia GN=GM1175...    34   3.2  
tr|B4QTF4|B4QTF4_DROSI GD20123 OS=Drosophila simulans GN=GD20123...    34   4.2  
tr|B4IHX2|B4IHX2_DROSE GM26918 OS=Drosophila sechellia GN=GM2691...    34   4.2  
tr|Q5KHM5|Q5KHM5_CRYNE Sexual development regulator OS=Cryptococ...    34   4.2  
tr|B4PMT5|B4PMT5_DROYA GE25142 OS=Drosophila yakuba GN=GE25142 P...    33   5.4  
tr|B7TQ21|B7TQ21_9BETA Gp141 OS=Caviid herpesvirus 2 PE=4 SV=1         33   7.1  
tr|Q9XYV5|Q9XYV5_TOXCA C-type lectin Tc-ctl-4 OS=Toxocara canis ...    33   7.1  
tr|Q1DVN0|Q1DVN0_COCIM Putative uncharacterized protein OS=Cocci...    33   9.3  
tr|B0D6N3|B0D6N3_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.3  

>tr|Q2LZU6|Q2LZU6_DROPS GA12618 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA12618 PE=4 SV=2
          Length = 902

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 22  HVST*ETAAIDNNKHWL*KK---CRPPRPSTCRPHRPSRTFPHHSFDAGPHYLREHAHNY 192
           H    ET +I ++ H + ++    +P +P   +P +P    PHHS    PH    H H+Y
Sbjct: 172 HEPNQETVSILSHCHQMQQQQQPVQPLQPLQNQPRKPHSHSPHHSRHTSPHSHHSHHHHY 231

Query: 193 FR 198
            R
Sbjct: 232 RR 233


>tr|B4IMN9|B4IMN9_DROSE GM11752 OS=Drosophila sechellia GN=GM11752
            PE=4 SV=1
          Length = 1438

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +1

Query: 91   PRPSTCRPHRPSRT-FPHHSFDAGPHYLREHAHNYFR*DPDHEKSLDSHQ*KT-TGANGA 264
            P+P  C  H+P+ T FP+H+    PH    + H +    P H     +H   T T + G 
Sbjct: 1316 PKPPPCPVHQPAHTAFPYHTHHHHPHAHHPYPHPHPHHHPHHHAGSSAHVATTATTSAGL 1375

Query: 265  FRTKPDGFLRSLPNPTSEYPP 327
              T         P+  +  PP
Sbjct: 1376 VSTHSQSHQYLHPSAPNLLPP 1396


>tr|B4QTF4|B4QTF4_DROSI GD20123 OS=Drosophila simulans GN=GD20123 PE=4
            SV=1
          Length = 2725

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 91   PRPSTCRPHRPSRT-FPHHSFDAGPHYLREHAHNYFR*DPDHEKSLDSH 234
            P+P  C  H+P+ T FP+H+    PH    + H +    P H     +H
Sbjct: 1110 PKPPPCPVHQPAHTAFPYHTHHHHPHAHHPYPHPHPHHHPHHHAGSSAH 1158


>tr|B4IHX2|B4IHX2_DROSE GM26918 OS=Drosophila sechellia GN=GM26918
            PE=4 SV=1
          Length = 2968

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 91   PRPSTCRPHRPSRT-FPHHSFDAGPHYLREHAHNYFR*DPDHEKSLDSH 234
            P+P  C  H+P+ T FP+H+    PH    + H +    P H     +H
Sbjct: 1353 PKPPPCPVHQPAHTAFPYHTHHHHPHAHHPYPHPHPHHHPHHHAGSSAH 1401


>tr|Q5KHM5|Q5KHM5_CRYNE Sexual development regulator OS=Cryptococcus
           neoformans GN=CND05950 PE=4 SV=1
          Length = 432

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 49  IDNNKHWL*KKCRPPRPSTCRPHRPSRTFPHH--SFDAGPHY 168
           I  + H+    CR PRPS  +PHR  RT P +  S D  P Y
Sbjct: 269 IFRSSHYFGFPCRLPRPSANKPHRSPRTPPSNTVSLDLSPTY 310


>tr|B4PMT5|B4PMT5_DROYA GE25142 OS=Drosophila yakuba GN=GE25142 PE=4
            SV=1
          Length = 2963

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91   PRPSTCRPHRPSRT-FPHHSFDAGPHYLREHAHNYFR*DPDHEKSLDSHQ*KTTGA 255
            P+P  C  H+P  T FP+H+    PH    + H +    P H     +H   T  A
Sbjct: 1344 PKPPPCPIHQPGHTAFPYHTHHHHPHAHHPYPHPHPHHHPHHHAGSSAHLASTATA 1399


>tr|B7TQ21|B7TQ21_9BETA Gp141 OS=Caviid herpesvirus 2 PE=4 SV=1
          Length = 535

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 82  CRPPRPSTCRPHRPSRTFPHHSFDAGPHYLREHAHNY 192
           CR  RPS CR H P+    H  FD G  +  E  H +
Sbjct: 326 CRLERPSVCRHHLPTTVGHHKFFDVGVAHDYEKQHQW 362


>tr|Q9XYV5|Q9XYV5_TOXCA C-type lectin Tc-ctl-4 OS=Toxocara canis
           PE=2 SV=1
          Length = 288

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 GGYSDVGFGNDLRNPSGFVLKAPLA 252
           G + D G GN  RNP GF+ K PLA
Sbjct: 264 GQWDDAGCGNIWRNPQGFICKKPLA 288


>tr|Q1DVN0|Q1DVN0_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_05633 PE=4 SV=1
          Length = 1147

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = +1

Query: 91  PRPSTCRPHRPSRTFPHHSFDAGPHYLREHAHNYFR*DPDHEKSLDSHQ*KTTGANGAFR 270
           P PS   P +P+  +P +SF+  P+Y            P H  S    Q     A    +
Sbjct: 118 PPPSYDNPPQPNPAYPTYSFEPAPYYQNSL--------PAHNTSFAQSQVDLQRA--TLQ 167

Query: 271 TKPDGFLRSLPNPTSEYPP 327
           + PD  L S P P +  PP
Sbjct: 168 SVPDNSLESHPAPYAAPPP 186


>tr|B0D6N3|B0D6N3_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_325914 PE=4 SV=1
          Length = 272

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
 Frame = +1

Query: 22  HVST*ETAAIDNNKHWL*KKCRPPRPSTCRPHR----PSRTFPHHSFDAGPHYLREHAHN 189
           H +  +T   D  +H    K RPP   T   H     P++T  H   +   H     AH 
Sbjct: 59  HPTPTKTTPPDTKRHPTGTKRRPPPMYTASAHENHTPPTKTSHHPPKNTSAHRKTRAAHR 118

Query: 190 YFR*DPDHEKSLDSHQ*KTTGANGAFRTKPDGFLRSLPNPTSEYPPTSKS 339
             R    H K+  +H    T  +G   T P     S P P +  PPT+ S
Sbjct: 119 KTR--AAHRKTRTTH----TTYDGT--TPPTKTTTSTPTPPTTTPPTATS 160