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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943548
Clone id YMU02A01NGRL0003_C23
Library
Length 344
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0003_C23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGATTGCGGTCTTCATCGACTATGACGCACAGAAGGAGGTGCTGGCTGTGCGGTTTCA
GAATGTGAGCGCGTCGGGGAAGGCGGATAAGGCAAAATCGACATTGTTCTTGTCATATGC
AGGTCTGAGTCTGGGCAAGACGGTGAATGAGATGTCGTATGTGGGCTTCTCGTCCAGAGT
GCCTGTCACTACAGATGGAGTGTACATCCTTTACGACTGGAGCTTCTCTACGCAATGGGT
GCTCAAAAAGAAGTAGGCATTAATGTATCTCTATCGACTTTCACCCCCCCAAAAAAAAAA
AAAAAAAAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9Y2K1
Definition sp|Q9Y2K1|ZBTB1_HUMAN Zinc finger and BTB domain-containing protein 1 OS=Homo sapiens
Align length 68
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943548|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_C23, 5'
         (290 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y2K1|ZBTB1_HUMAN Zinc finger and BTB domain-containing prot...    31   1.7  
sp|Q91VL9|ZBTB1_MOUSE Zinc finger and BTB domain-containing prot...    31   2.2  
sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Po...    30   3.7  
sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Ho...    30   3.7  
sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mu...    30   4.8  
sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Ga...    30   4.8  
sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thali...    29   6.3  
sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Da...    29   8.2  

>sp|Q9Y2K1|ZBTB1_HUMAN Zinc finger and BTB domain-containing protein
           1 OS=Homo sapiens GN=ZBTB1 PE=1 SV=3
          Length = 713

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 205 VHSICSDRHSGREAHIRHLIHRLAQTQTCI*QEQCRFCLIRLPRRAHILKPHSQHLLLCV 26
           V SIC   +  +  H+RH+I  L+  +T      C+ C    P    + +    HL  C 
Sbjct: 635 VCSICDQGNFRKHDHVRHMISHLSAGETI-----CQVCFQIFPNNEQLEQHMDVHLYTCG 689

Query: 25  IVDEDRNL 2
           I     NL
Sbjct: 690 ICGAKFNL 697


>sp|Q91VL9|ZBTB1_MOUSE Zinc finger and BTB domain-containing protein
           1 OS=Mus musculus GN=Zbtb1 PE=2 SV=1
          Length = 713

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 205 VHSICSDRHSGREAHIRHLIHRLAQTQTCI*QEQCRFCLIRLPRRAHILKPHSQHLLLCV 26
           V SIC   +  +  H+RH+I  L+  +T      C+ C    P    + +    HL  C 
Sbjct: 635 VCSICDQGNFRKHDHVRHMISHLSGGETI-----CQVCFQIFPNNEQLEQHMDVHLYTCG 689

Query: 25  IVDEDRNL 2
           I     NL
Sbjct: 690 ICGAKFNL 697


>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo
           abelii GN=SUPT5H PE=2 SV=1
          Length = 1083

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 VKDVHSICSDRHSGREAHIRHLIHRLA 134
           VKD+  +    HSGRE  IRHL    A
Sbjct: 592 VKDIVKVIDGPHSGREGEIRHLFRSFA 618


>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo
           sapiens GN=SUPT5H PE=1 SV=1
          Length = 1087

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 VKDVHSICSDRHSGREAHIRHLIHRLA 134
           VKD+  +    HSGRE  IRHL    A
Sbjct: 596 VKDIVKVIDGPHSGREGEIRHLFRSFA 622


>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus
           musculus GN=Supt5h PE=2 SV=1
          Length = 1082

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 VKDVHSICSDRHSGREAHIRHLIHRLA 134
           VKD+  +    HSGRE  IRHL    A
Sbjct: 594 VKDIVKVIDGPHSGREGEIRHLYRSFA 620


>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5
           OS=Gallus gallus GN=SUPT5H PE=2 SV=1
          Length = 1079

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 VKDVHSICSDRHSGREAHIRHLIHRLA 134
           VKD+  +    HSGRE  IRHL    A
Sbjct: 593 VKDIVKVIDGPHSGREGEIRHLFRGFA 619


>sp|Q9FLQ7|FH20_ARATH Formin-like protein 20 OS=Arabidopsis thaliana
           GN=FH20 PE=2 SV=2
          Length = 1615

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -1

Query: 92  PYPPSPTRSHSETAQ---PAPPSVRHSR*RPQS 3
           P PP PT SH +T+Q   P PP    S  RP S
Sbjct: 652 PPPPLPTYSHYQTSQLPPPPPPPPPFSSERPNS 684


>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio
           rerio GN=supt5h PE=1 SV=1
          Length = 1084

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 214 VKDVHSICSDRHSGREAHIRHLIHRLA 134
           VKD+  +    HSGRE  IRH+    A
Sbjct: 595 VKDIVKVIDGPHSGREGEIRHIFRGFA 621
tr_hit_id A9SGF7
Definition tr|A9SGF7|A9SGF7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 80
Score (bit) 80.5
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943548|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0003_C23, 5'
         (290 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SGF7|A9SGF7_PHYPA Predicted protein OS=Physcomitrella paten...    80   4e-14
tr|A9SGF3|A9SGF3_PHYPA Predicted protein OS=Physcomitrella paten...    80   4e-14
tr|Q10NU7|Q10NU7_ORYSJ Protein kinase domain containing protein,...    38   0.22 
tr|Q0DTB8|Q0DTB8_ORYSJ Os03g0258000 protein OS=Oryza sativa subs...    38   0.22 
tr|A2XEQ1|A2XEQ1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|Q9ZW11|Q9ZW11_ARATH Putative uncharacterized protein At2g2925...    37   0.64 
tr|Q9SEW3|Q9SEW3_SOYBN Receptor-like protein kinase (Fragment) O...    35   1.9  
tr|A7PIQ9|A7PIQ9_VITVI Chromosome chr13 scaffold_17, whole genom...    35   1.9  
tr|B5RU17|B5RU17_DEBHA DEHA2E15290p OS=Debaryomyces hansenii GN=...    35   2.4  
tr|Q8LIP0|Q8LIP0_ORYSJ Putative receptor-type protein kinase LRK...    34   3.2  
tr|B8B7R0|B8B7R0_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A3BLG1|A3BLG1_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|Q9M2S4|Q9M2S4_ARATH Probable serine/threonine-specific protei...    34   4.2  
tr|Q7XUN5|Q7XUN5_ORYSJ OSJNBa0081C01.17 protein OS=Oryza sativa ...    34   4.2  
tr|Q0JBH6|Q0JBH6_ORYSJ Os04g0531500 protein OS=Oryza sativa subs...    34   4.2  
tr|Q00RH9|Q00RH9_ORYSA OSIGBa0125M19.7 protein OS=Oryza sativa G...    34   4.2  
tr|B8ASD6|B8ASD6_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3AVU6|A3AVU6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q8LIP2|Q8LIP2_ORYSJ Os07g0575600 protein OS=Oryza sativa subs...    33   5.4  
tr|Q6H7D2|Q6H7D2_ORYSJ Os02g0640500 protein OS=Oryza sativa subs...    33   5.4  
tr|B8B7Q8|B8B7Q8_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|A9T2H3|A9T2H3_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|A3BLF9|A3BLF9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q28226|Q28226_CANFA Enolase OS=Canis familiaris PE=2 SV=1           33   5.4  
tr|A7HTN4|A7HTN4_PARL1 Short-chain dehydrogenase/reductase SDR O...    33   7.1  
tr|Q84ZI6|Q84ZI6_ORYSJ Putative receptor-like protein kinase (Pu...    33   7.1  
tr|Q84ZH8|Q84ZH8_ORYSJ Os07g0130600 protein OS=Oryza sativa subs...    33   7.1  
tr|Q6L4Y0|Q6L4Y0_ORYSJ Os05g0422300 protein OS=Oryza sativa subs...    33   7.1  
tr|B8B715|B8B715_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|B8AYD1|B8AYD1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  

>tr|A9SGF7|A9SGF7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79086 PE=4 SV=1
          Length = 297

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 41/80 (51%), Positives = 51/80 (63%)
 Frame = +2

Query: 2   KIAVFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRV 181
           KI V+I+YDA K+++ V    V  S     A   L + Y GL L K V E SYVGFSSRV
Sbjct: 211 KIGVWIEYDALKKIIMVYTHVVKDSQTPKLANRQLAIKYVGLDLAKEVKEFSYVGFSSRV 270

Query: 182 PVTTDGVYILYDWSFSTQWV 241
           P T +GVY+LYD++F T WV
Sbjct: 271 PETPNGVYMLYDFTFQTAWV 290


>tr|A9SGF3|A9SGF3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164759 PE=4 SV=1
          Length = 323

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 41/80 (51%), Positives = 51/80 (63%)
 Frame = +2

Query: 2   KIAVFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRV 181
           KI V+I+YDA K+++ V    V  S     A   L + Y GL L K V E SYVGFSSRV
Sbjct: 211 KIGVWIEYDALKKIIMVYTHVVKDSQTPKLANRQLAIKYVGLDLAKEVKEFSYVGFSSRV 270

Query: 182 PVTTDGVYILYDWSFSTQWV 241
           P T +GVY+LYD++F T WV
Sbjct: 271 PETPNGVYMLYDFTFQTAWV 290


>tr|Q10NU7|Q10NU7_ORYSJ Protein kinase domain containing protein,
            expressed (Putative uncharacterized protein) OS=Oryza
            sativa subsp. japonica GN=LOC_Os03g15250 PE=4 SV=1
          Length = 1311

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +2

Query: 11   VFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVPVT 190
            V++DY+ Q  VL V    +  S    K K  L  +  GL L + V +++Y+GFSS   ++
Sbjct: 868  VWVDYNGQAMVLNVTLAPLGVS----KPKKPLLPT--GLDLSRVVEDIAYIGFSSATGLS 921

Query: 191  TDGVYILYDWSFS 229
                Y+L  WSFS
Sbjct: 922  IAYHYVL-GWSFS 933


>tr|Q0DTB8|Q0DTB8_ORYSJ Os03g0258000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0258000 PE=4 SV=1
          Length = 504

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +2

Query: 11  VFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVPVT 190
           V++DY+ Q  VL V    +  S    K K  L  +  GL L + V +++Y+GFSS   ++
Sbjct: 181 VWVDYNGQAMVLNVTLAPLGVS----KPKKPLLPT--GLDLSRVVEDIAYIGFSSATGLS 234

Query: 191 TDGVYILYDWSFS 229
               Y+L  WSFS
Sbjct: 235 IAYHYVL-GWSFS 246


>tr|A2XEQ1|A2XEQ1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_10814 PE=4 SV=1
          Length = 1305

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +2

Query: 11   VFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVPVT 190
            V++DY+ Q  VL V    +  S    K K  L  +  GL L + V +++Y+GFSS   ++
Sbjct: 868  VWVDYNGQAMVLNVTLAPLGVS----KPKKPLLPT--GLDLSRVVEDIAYIGFSSATGLS 921

Query: 191  TDGVYILYDWSFS 229
                Y+L  WSFS
Sbjct: 922  IAYHYVL-GWSFS 933


>tr|Q9ZW11|Q9ZW11_ARATH Putative uncharacterized protein At2g29250
           OS=Arabidopsis thaliana GN=At2g29250 PE=2 SV=1
          Length = 623

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +2

Query: 5   IAVFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVP 184
           I V+I+Y+A + +L V    +      D+ K  L L    L+L   ++E +YVGFS+   
Sbjct: 195 IRVWIEYNATETMLNVTLAPL------DRPKPKLPLLSRKLNLSGIISEENYVGFSAATG 248

Query: 185 VTTDGVYILYDWSFSTQ 235
             T   ++L  WSFS +
Sbjct: 249 TVTSSHFVL-GWSFSIE 264


>tr|Q9SEW3|Q9SEW3_SOYBN Receptor-like protein kinase (Fragment)
           OS=Glycine max PE=4 SV=1
          Length = 276

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/73 (34%), Positives = 34/73 (46%)
 Frame = +2

Query: 14  FIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVPVTT 193
           ++DYD  K  L VR    S+        ++  LSY  + L   + +  YVGFSS   +  
Sbjct: 157 WVDYDXLKNNLEVRLSTTSSK------PTSPILSYK-VDLSPILQDSMYVGFSSSTGLLA 209

Query: 194 DGVYILYDWSFST 232
              YIL  WSF T
Sbjct: 210 SSHYIL-GWSFKT 221


>tr|A7PIQ9|A7PIQ9_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018441001
           PE=4 SV=1
          Length = 679

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/79 (31%), Positives = 36/79 (45%)
 Frame = +2

Query: 5   IAVFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVP 184
           I  +IDYD Q++ L     NV  S  + K  S +     G++L   + E  YVGFS+   
Sbjct: 194 IQAWIDYDGQRDQL-----NVFLSPHSTKPTSPILS--CGVNLSSILKEFMYVGFSASTG 246

Query: 185 VTTDGVYILYDWSFSTQWV 241
           +     Y+L  W F    V
Sbjct: 247 LLASSHYVL-GWRFKMNGV 264


>tr|B5RU17|B5RU17_DEBHA DEHA2E15290p OS=Debaryomyces hansenii
           GN=DEHA2E15290g PE=4 SV=1
          Length = 905

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 2   KIAVFIDYDAQKEVLAVRFQNVSASGKADKA--KSTLFLSYAGLSLGKTVNEMSYVGFSS 175
           K    +DY  + ++  V F N ++S     A   + + L  +GLSLG  +N +    F  
Sbjct: 269 KFEALVDYSFEDQISEVDFMNYASSEFVLLATESNVILLDVSGLSLGGDINAIQKYQFQF 328

Query: 176 RVPVTTDGVYILYDWSFSTQWV 241
              + T   YI YD   + Q +
Sbjct: 329 NSSIQTGQNYITYDKGSNLQLI 350


>tr|Q8LIP0|Q8LIP0_ORYSJ Putative receptor-type protein kinase LRK1
           OS=Oryza sativa subsp. japonica GN=OJ1562_B11.131 PE=4
           SV=1
          Length = 692

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 29/73 (39%), Positives = 36/73 (49%)
 Frame = +2

Query: 11  VFIDYDAQKEVLAVRFQNVSASGKADKAKSTLFLSYAGLSLGKTVNEMSYVGFSSRVPVT 190
           V++DYD Q + L V    V    +  K K  L LS A + L   + E  YVGFSS   V 
Sbjct: 214 VWVDYDGQAKQLNVTLSPV----QVPKPKKPL-LSQA-IDLSTVMAEEMYVGFSSATGVV 267

Query: 191 TDGVYILYDWSFS 229
               Y+L  WSFS
Sbjct: 268 FTHHYVL-GWSFS 279