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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921707
Clone id YMU001_000153_B12
Library
Length 380
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000153_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAATTACTCTGAAGATCGATATGTACATCCTTGCACATAAACACTGAGCGGTACTGCGA
CACAATGCTCTGCAGTCAGCTTAGCAAGCCTATCTTTCTCGGTCTTTCTTTGAACGAAGA
CACTATGTGCAGCAGGTATGTCTAACTCCACCAGTTTGGACCAGTGCTTGTAAGTTTTTC
GAGCATCTTTTCCATCACAAACACTAGCACAATCAACCTCAAATTTCTGCTGAACGTTTA
ACAGGGGGCTCAAAGTAGCCACTGATAGCTCATCACCCTTTCCTTTTAGAAGGTGCAAAA
TATCATCATACTGCTTTCGTGTCACCTTCAAAACATGCATGGATTGTGTGCAACCATCAG
TATGTATGCAATTGCTGAGC
■■Homology search results ■■ -
sp_hit_id Q12830
Definition sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens
Align length 100
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921707|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B12.
         (380 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF O...    33   0.57 
sp|Q9Y7N7|NAR1_SCHPO Nuclear architecture-related protein 1 OS=S...    31   2.2  
sp|Q94HW3|DRL11_ARATH Probable disease resistance protein RDL6/R...    31   2.2  
sp|Q8W3J8|DRL10_ARATH Probable disease resistance protein RDL5/R...    31   2.2  
sp|Q5SUV2|MYBPP_MOUSE MYCBP-associated protein OS=Mus musculus G...    29   6.3  
sp|Q255B1|TRMD_CHLFF tRNA (guanine-N(1)-)-methyltransferase OS=C...    29   8.2  
sp|A7GTZ9|MOAC_BACCN Molybdenum cofactor biosynthesis protein C ...    29   8.2  

>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF
            OS=Homo sapiens GN=BPTF PE=1 SV=3
          Length = 3046

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
 Frame = -2

Query: 340  MHVLKVTRKQYDDILHLLKGKGDELSVATLSPL---------LNVQQKFEVDCASVCDGK 188
            M + K+T K+  D+  LL    D+        +         +N Q+  +VD  +V +G 
Sbjct: 1112 MDISKITEKKDQDVKELLDSDSDKPCKEEPMEVDDDMKTESHVNCQESSQVDVVNVSEGF 1171

Query: 187  DARKTYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTAE 68
              R +YK  +K  +LD      +      EK RL K+  E
Sbjct: 1172 HLRTSYKKKTKSSKLDGLLERRIKQFTLEEKQRLEKIKLE 1211


>sp|Q9Y7N7|NAR1_SCHPO Nuclear architecture-related protein 1
           OS=Schizosaccharomyces pombe GN=SPCC1450.10c PE=2 SV=1
          Length = 538

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 379 LSNCIHTDGCTQSMHVLKVTRKQYDDIL-HLLKGKGDELSVATLSP 245
           L++C+   GC  S   + V  + Y ++L HL   K  E+   +LSP
Sbjct: 61  LNDCLACSGCITSAETVLVNLQSYQEVLKHLESRKSQEILYVSLSP 106


>sp|Q94HW3|DRL11_ARATH Probable disease resistance protein RDL6/RF9
           OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1
          Length = 1049

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 175 TYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTAEHCVAVPLSVYVQG 29
           T   W+    + +P   +   +   EK+ L KL  +HC  +PL++ V G
Sbjct: 323 TEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLG 371


>sp|Q8W3J8|DRL10_ARATH Probable disease resistance protein RDL5/RF45
           OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=2
          Length = 855

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 175 TYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTAEHCVAVPLSVYVQG 29
           T   W+    + +P   +   +   EK+ L KL  +HC  +PL++ V G
Sbjct: 323 TEDSWTLFQRIALPMKDAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLG 371


>sp|Q5SUV2|MYBPP_MOUSE MYCBP-associated protein OS=Mus musculus
           GN=Mycbpap PE=2 SV=1
          Length = 932

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 23/100 (23%), Positives = 45/100 (45%)
 Frame = -2

Query: 331 LKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGKDARKTYKHWSKL 152
           + + +KQ + +   LK    EL + T      +Q++ EV   ++    D + T   WS L
Sbjct: 197 IALRKKQQEALSKHLKKPASELLMHTGESYRKIQEEREVIDRALPTQHDGKATSWFWSPL 256

Query: 151 VELDIPAAHSVFVQRKTEKDRLAKLTAEHCVAVPLSVYVQ 32
             L       +  ++KT++  +  +T    +  PLS+ V+
Sbjct: 257 EYLGDEMTGLLMTKKKTQRGLVEPITH---IRKPLSIQVE 293


>sp|Q255B1|TRMD_CHLFF tRNA (guanine-N(1)-)-methyltransferase
           OS=Chlamydophila felis (strain Fe/C-56) GN=trmD PE=3
           SV=1
          Length = 355

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 232 QQKFEVDCASVCDGKDARKTYKHWSKLVELDIPAAHSVFVQRKTE 98
           Q  FE +CA V D ++  ++ + +SK+ + + P    +++  KT+
Sbjct: 241 QSAFEGECAVVLDVENINRSKRFYSKVFKSNQPIGDKLYIPGKTQ 285


>sp|A7GTZ9|MOAC_BACCN Molybdenum cofactor biosynthesis protein C
           OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
           GN=moaC PE=3 SV=1
          Length = 161

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
 Frame = -2

Query: 325 VTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVD-------CASVCDGKDARKTYK 167
           VT++ YD I H   GKGD L VA ++ ++  ++  +V           V    D ++  K
Sbjct: 36  VTKEIYDKISHHEIGKGDVLGVAQIAGIMAAKRTSDVIPMCHPLLLKGVDVSFDWKQEKK 95

Query: 166 HWSKLVELDIPAAHSVFVQRK--TEKDRLAKLTAEHCVAVPLSVYVQGCTY 20
            +  L+E+ +    S  V+ +  T     A    + C AV   + + G TY
Sbjct: 96  QYRLLIEVKVKTEGSTGVEMEALTAASMTALTVYDMCKAVDKGMII-GETY 145
tr_hit_id A7PA40
Definition tr|A7PA40|A7PA40_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 99
Score (bit) 43.5
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921707|Adiantum capillus-veneris mRNA, clone:
YMU001_000153_B12.
         (380 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PA40|A7PA40_VITVI Chromosome chr14 scaffold_9, whole genome...    44   0.005
tr|A5BSY2|A5BSY2_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|Q6Z3A7|Q6Z3A7_ORYSJ cDNA clone:J013027P12, full insert sequen...    36   1.1  
tr|B8B5S4|B8B5S4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B4FZ08|B4FZ08_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|A3BJG8|A3BJG8_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A9DUL4|A9DUL4_9FLAO Putative uncharacterized protein OS=Kordi...    34   3.1  
tr|B4PWU4|B4PWU4_DROYA Mxc OS=Drosophila yakuba GN=Dyak\mxc PE=4...    34   3.1  
tr|Q599M9|Q599M9_9BETA E140 protein OS=Murid herpesvirus 2 GN=e1...    33   5.3  
tr|Q6P3G5|Q6P3G5_DANRE Adenosine monophosphate deaminase 1 (Isof...    33   7.0  
tr|B3NT90|B3NT90_DROER GG18304 OS=Drosophila erecta GN=GG18304 P...    33   7.0  

>tr|A7PA40|A7PA40_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037961001
           PE=4 SV=1
          Length = 504

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 23/99 (23%), Positives = 54/99 (54%)
 Frame = -2

Query: 367 IHTDGCTQSMHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGK 188
           IH     + M  +K+++KQ+  ++  +K  G+ +   +L+ +L     F +    V + +
Sbjct: 89  IHYGDGAKYMSYIKISKKQHQ-LVKSMKQSGNSIQPRSLNRVLGDLDSFHIRPYEVFEEE 147

Query: 187 DARKTYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTA 71
           + RK ++HWS+L   D+PAA +   +++ ++ ++ +  A
Sbjct: 148 EKRKFHEHWSQLATRDLPAAFANRGKKQLQRRQMTQSLA 186


>tr|A5BSY2|A5BSY2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029912 PE=4 SV=1
          Length = 875

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 23/99 (23%), Positives = 54/99 (54%)
 Frame = -2

Query: 367 IHTDGCTQSMHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGK 188
           IH     + M  +K+++KQ+  ++  +K  G+ +   +L+ +L     F +    V + +
Sbjct: 341 IHYGDGAKYMSYIKISKKQHQ-LVKSMKQSGNSIQPRSLNRVLGDLDSFHIRPYEVFEEE 399

Query: 187 DARKTYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTA 71
           + RK ++HWS+L   D+PAA +   +++ ++ ++ +  A
Sbjct: 400 EKRKFHEHWSQLATRDLPAAFANRGKKQLQRRQMTQSLA 438


>tr|Q6Z3A7|Q6Z3A7_ORYSJ cDNA clone:J013027P12, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0038F09.34-1 PE=2
           SV=1
          Length = 353

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = -2

Query: 340 MHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGKDARKTYKHW 161
           M  ++++R Q++ ++  +K  GD +    L+ ++    KF V         + R+  +HW
Sbjct: 248 MSYIEISRTQHN-LVKSMKQSGDGIKTKHLTRVIGNLDKFHVKPYGTLIDDEQRRLREHW 306

Query: 160 SKLVELDIPAAHSVFVQRKTEKDRLAKL 77
             +   DIPAA  V    +   ++L  L
Sbjct: 307 LNISCNDIPAAFEVLKNNRVTTEKLRNL 334


>tr|B8B5S4|B8B5S4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25893 PE=4 SV=1
          Length = 988

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = -2

Query: 340 MHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGKDARKTYKHW 161
           M  ++++R Q++ ++  +K  GD +    L+ ++    KF V         + R+  +HW
Sbjct: 309 MSYIEISRTQHN-LVKSMKQSGDGIKTKHLTRVIGNLDKFHVKPYGTLIDDEQRRLREHW 367

Query: 160 SKLVELDIPAAHSVFVQRKTEKDRLAKL 77
             +   DIPAA  V    +   ++L  L
Sbjct: 368 LNISCNDIPAAFEVLKNNRVTTEKLRNL 395


>tr|B4FZ08|B4FZ08_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 358

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = -2

Query: 340 MHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGKDARKTYKHW 161
           M  +KV+R Q + I  L K  GD +    +S ++    K  V         + R+  +HW
Sbjct: 246 MSYIKVSRTQLNHIKRL-KQSGDGIQTKHVSRVIGGLDKSHVKPYGALLEDEQRRLREHW 304

Query: 160 SKLVELDIPAAHSVFVQRKTEKDRLAKL 77
            ++   D+PAA  V  +RK   ++  KL
Sbjct: 305 LEMSCNDLPAAFEVLRERKVLMEKSIKL 332


>tr|A3BJG8|A3BJG8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023190 PE=4 SV=1
          Length = 914

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = -2

Query: 340 MHVLKVTRKQYDDILHLLKGKGDELSVATLSPLLNVQQKFEVDCASVCDGKDARKTYKHW 161
           M  ++++R Q++ ++  +K  GD +    L+ ++    KF V         + R+  +HW
Sbjct: 233 MSYIEISRTQHN-LVKSMKQSGDGIKTKHLTRVIGNLDKFHVKPYGTLIDDEQRRLREHW 291

Query: 160 SKLVELDIPAAHSVFVQRKTEKDRLAKL 77
             +   DIPAA  V    +   ++L  L
Sbjct: 292 LNISCNDIPAAFEVLKNNRVTTEKLRNL 319


>tr|A9DUL4|A9DUL4_9FLAO Putative uncharacterized protein OS=Kordia
           algicida OT-1 GN=KAOT1_02812 PE=4 SV=1
          Length = 235

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -2

Query: 346 QSMHVLKVTRKQYDDILHLLKGKG 275
           +S H+++V RK+ DDILH+  GKG
Sbjct: 22  ESRHIVRVLRKKEDDILHITNGKG 45


>tr|B4PWU4|B4PWU4_DROYA Mxc OS=Drosophila yakuba GN=Dyak\mxc PE=4
           SV=1
          Length = 595

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
 Frame = -2

Query: 370 CIHTDGCTQSMHVLKVTRKQYDDILHLLKGKGDELSVATL-SPLLNVQQKFEVDCAS--- 203
           C   + CT ++  LK   +QY DI ++   +GD++++  L +P    +   +V+CA    
Sbjct: 476 CTLLEPCT-NVKELKADMRQYPDIKYVDIKEGDQVALLRLGTPAAAEEFVRQVNCAERQL 534

Query: 202 -VCDGKDARKTYKHWSKLVE-LDIPAAHSVFVQRKTEKDRLAKLTAEH 65
            V  G+       +W K+ +  +   +  V VQ+K  ++++AKL A+H
Sbjct: 535 KVLSGQQETL---YWRKIEQDREAKLSKKVRVQQKRGREKVAKLLAKH 579


>tr|Q599M9|Q599M9_9BETA E140 protein OS=Murid herpesvirus 2 GN=e140
           PE=4 SV=1
          Length = 463

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 196 DGKDARKTYKHWSKLVELDIPAAHSVFVQRKTEKDRLAKLTAEHCVAVPLSVYVQGCT 23
           +G +      +W ++   DIP   +V V    + D+LA+    HC ++  +VYV  CT
Sbjct: 108 EGTELAVCMGNWGRIYVYDIPEDAAVLVA--VDLDKLARFGLIHCESIYRTVYVPNCT 163


>tr|Q6P3G5|Q6P3G5_DANRE Adenosine monophosphate deaminase 1 (Isoform
           M) OS=Danio rerio GN=ampd1 PE=2 SV=1
          Length = 717

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = -2

Query: 367 IHTDGCTQSMHVLKVTRKQY----DDILHLLKGKGDELSVATLSPLLNVQ-QKFEVDCAS 203
           IH   C    H+L+  +K Y    D ++H+LKGK  E+++  L   LN+      VD   
Sbjct: 275 IHAAACMNQKHLLRFIKKSYRVDADRVVHVLKGK--EVTLKELFASLNLHPYDLTVDSLD 332

Query: 202 VCDGKDARKTYKHWSK 155
           V  G   R+T++ + K
Sbjct: 333 VHAG---RQTFQRFDK 345