BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921654|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F02.
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity f...    31   2.5  
sp|Q56989|HMUR_YERPE Hemin receptor OS=Yersinia pestis GN=hmuR P...    30   7.2  
sp|Q20911|CUBN_CAEEL Probable cubilin OS=Caenorhabditis elegans ...    29   9.4  

>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity
           factor subunit 2 OS=Dictyostelium discoideum GN=cpsf2
           PE=3 SV=1
          Length = 784

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 76  DLVEVHQTAKLLQQHAQISFNQCPLEDELESYTFSQYYYSTIM---ISTSPKSAGYTNGC 246
           DL E   + +  QQ++  + + C  ED  +  +FSQ+Y  +     IS +P  AG+T G 
Sbjct: 100 DLYENKMSQEEFQQYSLDNIDSCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGA 159

Query: 247 HSYTVRK 267
             + + K
Sbjct: 160 SVWKITK 166


>sp|Q56989|HMUR_YERPE Hemin receptor OS=Yersinia pestis GN=hmuR PE=3
           SV=1
          Length = 676

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 73  PDLVEVHQTAKLLQQHAQISFNQCPLEDELESYTFSQYYYSTIMISTSPKSA 228
           P    V      +Q+ AQ+ +N  PL+ E  + T +Q YYS + I+  P+ +
Sbjct: 274 PSSTNVMTNRSTIQRDAQLRYNIKPLDQEWLNAT-AQVYYSEVEINARPQGS 324


>sp|Q20911|CUBN_CAEEL Probable cubilin OS=Caenorhabditis elegans
            GN=ZC116.3 PE=1 SV=4
          Length = 4047

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 325  YPVRVYSRDFCTWII 281
            YP +VYS  FCTW I
Sbjct: 1445 YPYKVYSNQFCTWTI 1459

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921654|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F02.
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4KDL0|Q4KDL0_PSEF5 Sigma-54 dependent transcriptional regula...    34   4.2  
tr|B4JYT4|B4JYT4_DROGR GH22347 OS=Drosophila grimshawi GN=GH2234...    34   4.2  
tr|A8XFB2|A8XFB2_CAEBR Putative uncharacterized protein OS=Caeno...    33   9.2  

>tr|Q4KDL0|Q4KDL0_PSEF5 Sigma-54 dependent transcriptional regulator
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_2566 PE=4 SV=1
          Length = 437

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +2

Query: 266 NVYRANDPRTKIPAVDPHRVLQILLYTFPVNILELFDLLK 385
           ++ R  DP   +P VDP  + Q+ LYT+P NI EL ++L+
Sbjct: 324 SLLRRLDPGV-VPRVDPQALAQLSLYTYPGNIRELRNILE 362


>tr|B4JYT4|B4JYT4_DROGR GH22347 OS=Drosophila grimshawi GN=GH22347
           PE=4 SV=1
          Length = 1714

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 130 SFNQCPLEDELESYTF-SQYYYSTIMISTSPKSAGYTNGCHSYTVRKCVSS**STYK 297
           S N+CP ++   S  F +Q YYS I +S    S  Y  G + YT+ + + S  S+Y+
Sbjct: 413 SSNECPKDENGASSAFKNQQYYSGIPVSNLIPSDNYGYGHYGYTMGESIHSWSSSYR 469


>tr|A8XFB2|A8XFB2_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG12386 PE=4 SV=1
          Length = 2855

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 7   LQVLCKNVASFLKNSL*TVEQNPDLVEVHQTAKLLQQHAQISFNQCPLED 156
           +Q++ KN +++L NS       P  V +HQ+A+  + H+  SF +  +ED
Sbjct: 577 VQIVSKNQSAYLTNSSTFSGFGPTTVVIHQSAEPFEFHSIYSFQETRIED 626