NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921593
Clone id YMU001_000151_H04
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTAAANAGAAAACCACCATTACAAAGCTGTCTCTTTTTACAGTAT
ATGTGGAGCCACCAATATTATACGCTGGACTACAACCCAGATTTTGATCCGTCTTCAAAA
TGCTGTTTACTCTCCAAATAAGAATATCGTGAAGCAGCTATAAACAAAAACCACGATTAC
AAAGCTGTCTTTTTTACAGCATACGAAGAGCCAATCATATTATATGCCGGACTACAACCC
AGATTTTGATTTGTCAAGAATACAATAACAGGGATTAGCAAAACCAGATCATTTGTTCTT
GTATGCAAGCGCAGCATGCAGAGGTCCCTCTAAAAATCTTCACTTCCAGCTGAAGTCAGA
TGTCTGATATCCTTCACTGCTCGGTTTGCGGCATATAGCAACAACTTATGCGCCTCAAGC
TTGTCATCCTCCGCC
■■Homology search results ■■ -
sp_hit_id P11442
Definition sp|P11442|CLH_RAT Clathrin heavy chain 1 OS=Rattus norvegicus
Align length 26
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921593|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_H04.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11442|CLH_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN...    29   6.4  
sp|Q68FD5|CLH_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cl...    29   6.4  
sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=C...    29   6.4  
sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=C...    29   6.4  
sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLT...    29   6.4  

>sp|P11442|CLH_RAT Clathrin heavy chain 1 OS=Rattus norvegicus
          GN=Cltc PE=1 SV=3
          Length = 1675

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 89 QNLGCSPAYNIGGSTYTVKRDSFVMV 12
          QNLG +PA NIG ST T++ D F+ +
Sbjct: 16 QNLGINPA-NIGFSTLTMESDKFICI 40


>sp|Q68FD5|CLH_MOUSE Clathrin heavy chain 1 OS=Mus musculus
          GN=Cltc PE=1 SV=3
          Length = 1675

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 89 QNLGCSPAYNIGGSTYTVKRDSFVMV 12
          QNLG +PA NIG ST T++ D F+ +
Sbjct: 16 QNLGINPA-NIGFSTLTMESDKFICI 40


>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens
          GN=CLTCL1 PE=1 SV=2
          Length = 1640

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 89 QNLGCSPAYNIGGSTYTVKRDSFVMV 12
          QNLG +PA NIG ST T++ D F+ +
Sbjct: 16 QNLGINPA-NIGFSTLTMESDKFICI 40


>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens
          GN=CLTC PE=1 SV=5
          Length = 1675

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 89 QNLGCSPAYNIGGSTYTVKRDSFVMV 12
          QNLG +PA NIG ST T++ D F+ +
Sbjct: 16 QNLGINPA-NIGFSTLTMESDKFICI 40


>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC
          PE=1 SV=1
          Length = 1675

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 89 QNLGCSPAYNIGGSTYTVKRDSFVMV 12
          QNLG +PA NIG ST T++ D F+ +
Sbjct: 16 QNLGINPA-NIGFSTLTMESDKFICI 40
tr_hit_id A7R829
Definition tr|A7R829|A7R829_VITVI Chromosome undetermined scaffold_2204, whole genome shotgun sequence OS=Vitis vinifera
Align length 29
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921593|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_H04.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R829|A7R829_VITVI Chromosome undetermined scaffold_2204, wh...    33   5.4  
tr|A5C057|A5C057_VITVI Putative uncharacterized protein OS=Vitis...    33   5.4  

>tr|A7R829|A7R829_VITVI Chromosome undetermined scaffold_2204, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011146001 PE=4 SV=1
          Length = 330

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -2

Query: 417 AEDDKLEAHKLLLYAANRAVKDIRHLTSA 331
           A++D LE  K+ LY+ N A+K+I++LT A
Sbjct: 301 AKEDNLEVKKMTLYSINTAIKEIQNLTCA 329


>tr|A5C057|A5C057_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_042729 PE=4 SV=1
          Length = 1266

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -2

Query: 417  AEDDKLEAHKLLLYAANRAVKDIRHLTSA 331
            A++D LE  K+ LY+ N A+K+I++LT A
Sbjct: 1237 AKEDNLEVKKMTLYSINTAIKEIQNLTCA 1265