BP921504 |
Clone id |
YMU001_000150_G01 |
Library |
YMU01 |
Length |
314 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000150_G01. |
Accession |
BP921504 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TATATACATATGCATCCTTTAAAGGGATGGAATTCGCACATAAAAATCTGCATATGACCT CTTCTGTTGCTTGCCAAGCCCAAAGTAATTAGTTATTATCAGCCATTAATGCACCATGTC CATATGTACACTCAAATCCCGTTCACTGTGTACTGCCAATCCACATATAGGACAAGCTAC AGACAGAGAACGTTTATACGATGAACTTAAAGCAGCATTCATATCTTGGTCTCCTTGGCC CTGCTCTACAGGATGATGAGTCGTCCGCGAAAAGTGCTCATCATCCAGATGTGCATTCAT CAACGTATCAGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O73590 |
Definition |
sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus |
Align length |
65 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921504|Adiantum capillus-veneris mRNA, clone: YMU001_000150_G01. (314 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus g... 31 2.2 sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sap... 30 2.9 sp|Q9UPP5|K1107_HUMAN Uncharacterized protein KIAA1107 OS=Homo s... 30 2.9 sp|Q5DTH5|TSH1_MOUSE Teashirt homolog 1 OS=Mus musculus GN=Tshz1... 30 4.9 sp|Q6ZSZ6|TSH1_HUMAN Teashirt homolog 1 OS=Homo sapiens GN=TSHZ1... 30 4.9 sp|Q9JLC4|SORC1_MOUSE VPS10 domain-containing receptor SorCS1 OS... 30 4.9 sp|Q8WY21|SORC1_HUMAN VPS10 domain-containing receptor SorCS1 OS... 30 4.9 sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musc... 29 6.4 sp|P16423|POLR_DROME Retrovirus-related Pol polyprotein from typ... 29 6.4 sp|Q16620|NTRK2_HUMAN BDNF/NT-3 growth factors receptor OS=Homo ... 29 6.4 sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abe... 29 6.4 sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus muscu... 29 6.4 sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapi... 29 6.4 sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis sil... 29 6.4 sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus ga... 29 6.4 sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos tauru... 29 6.4 sp|Q3SWY8|ZUFSP_BOVIN Zinc finger with UFM1-specific peptidase d... 29 8.3 sp|Q90ZS6|TRPS1_XENLA Zinc finger transcription factor Trps1 OS=... 29 8.3 sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopu... 29 8.3 sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio ... 29 8.3
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2 Length = 3573
Score = 30.8 bits (68), Expect = 2.2 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Frame = -3
Query: 270 SRTTHHPVEQGQGDQDMNAALSS-SYKRSL----------SVACPICGLAVHSERDLSVH 124 S T HP E +GD+D + S+ S + CP C + S R L H Sbjct: 568 SPTALHPNETARGDEDSSVTPHQHSFTPSTPSAGDGSPGSGIECPKCDTVLGSSRSLGGH 627
Query: 123 MDMVH 109 M M+H Sbjct: 628 MTMMH 632
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1 Length = 3567
Score = 30.4 bits (67), Expect = 2.9 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 15/69 (21%) Frame = -3
Query: 270 SRTTHHPVEQGQGDQDMNAAL---------------SSSYKRSLSVACPICGLAVHSERD 136 S T HP E +GD+D +A + CP C + S R Sbjct: 568 SATAAHPSEIARGDEDSSATPHQHGFTPSTPGTPGPGGDGSPGSGIECPKCDTVLGSSRS 627
Query: 135 LSVHMDMVH 109 L HM M+H Sbjct: 628 LGGHMTMMH 636
>sp|Q9UPP5|K1107_HUMAN Uncharacterized protein KIAA1107 OS=Homo sapiens GN=KIAA1107 PE=1 SV=2 Length = 1409
Score = 30.4 bits (67), Expect = 2.9 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = -3
Query: 285 DDEHFSRTTHHPVEQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERDLS-----VHM 121 DD+HF++ ++Q +QD N +++S LS+A + + RD S H+ Sbjct: 1306 DDQHFAKQDWTLLKQLLSEQDSNLDVTNSVPEDLSLAQYLINQTLLLARDSSKPQGITHI 1365
Query: 120 DMVH*WLIITN 88 D ++ W +T+ Sbjct: 1366 DTLNRWSELTS 1376
>sp|Q5DTH5|TSH1_MOUSE Teashirt homolog 1 OS=Mus musculus GN=Tshz1 PE=2 SV=2 Length = 1084
Score = 29.6 bits (65), Expect = 4.9 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Frame = -3
Query: 276 HFSRTTHHPVEQGQGDQDMNAALSSSYKRSLS-----------VACPICGLAVHSERDLS 130 H + T H+ + D + S KRSL + C CG + S +DLS Sbjct: 264 HMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLS 323
Query: 129 VHM 121 VHM Sbjct: 324 VHM 326
>sp|Q6ZSZ6|TSH1_HUMAN Teashirt homolog 1 OS=Homo sapiens GN=TSHZ1 PE=2 SV=2 Length = 1077
Score = 29.6 bits (65), Expect = 4.9 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Frame = -3
Query: 276 HFSRTTHHPVEQGQGDQDMNAALSSSYKRSLS-----------VACPICGLAVHSERDLS 130 H + T H+ + D + S KRSL + C CG + S +DLS Sbjct: 264 HMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLS 323
Query: 129 VHM 121 VHM Sbjct: 324 VHM 326
>sp|Q9JLC4|SORC1_MOUSE VPS10 domain-containing receptor SorCS1 OS=Mus musculus GN=Sorcs1 PE=2 SV=1 Length = 1167
Score = 29.6 bits (65), Expect = 4.9 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +3
Query: 3 YTYASFKGMEFAHKNLHMTSSVACQAQSN*LLSAINAPCPYVHSNPVHCVLP---IHI*D 173 Y A KGM A+K + + AP + +PVHC+LP +H+ Sbjct: 470 YEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDADLRGDPVHCLLPYCSLHLHL 529
Query: 174 KLQTENVYTMNL 209 K+ +EN YT + Sbjct: 530 KV-SENPYTSGI 540
>sp|Q8WY21|SORC1_HUMAN VPS10 domain-containing receptor SorCS1 OS=Homo sapiens GN=SORCS1 PE=2 SV=3 Length = 1168
Score = 29.6 bits (65), Expect = 4.9 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +3
Query: 3 YTYASFKGMEFAHKNLHMTSSVACQAQSN*LLSAINAPCPYVHSNPVHCVLP---IHI*D 173 Y A KGM A+K + + AP + +PVHC+LP +H+ Sbjct: 470 YEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHL 529
Query: 174 KLQTENVYTMNL 209 K+ +EN YT + Sbjct: 530 KV-SENPYTSGI 540
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1 Length = 3550
Score = 29.3 bits (64), Expect = 6.4 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 14/66 (21%) Frame = -3
Query: 264 TTHHPVEQGQGDQDMNAALSSSYKRSL--------------SVACPICGLAVHSERDLSV 127 TT P E GD+D + + S + CP C + S R L Sbjct: 569 TTAAPSETTHGDEDSSTTHQHGFTPSTPGTPGPGGDGSPGNGIECPKCDTVLGSSRSLGG 628
Query: 126 HMDMVH 109 HM M+H Sbjct: 629 HMTMMH 634
>sp|P16423|POLR_DROME Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1057
Score = 29.3 bits (64), Expect = 6.4 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -3
Query: 276 HFSRTTHHPVEQGQGDQ-DMNAALSSSYKRSLSVACPICGLAVHSERDLSVHMDMVH 109 H TT V+ DQ + NAA + S V C +CG + +S+R L VHM H Sbjct: 33 HNLMTTRPSVDIFPEDQYEPNAAATLS-----RVPCTVCGRSFNSKRGLGVHMRSRH 84
>sp|Q16620|NTRK2_HUMAN BDNF/NT-3 growth factors receptor OS=Homo sapiens GN=NTRK2 PE=1 SV=1 Length = 822
Score = 29.3 bits (64), Expect = 6.4 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3
Query: 192 VYTMNLKQHSYLGLLGPA--LQDDESSAKSAHHPDVHSST 305 ++ + L +HS G+ GPA + +D+ SA HH S+T Sbjct: 451 LFLLKLARHSKFGMKGPASVISNDDDSASPLHHISNGSNT 490
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2PZ12 |
Definition |
tr|A2PZ12|A2PZ12_THUDO Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Thujopsis dolabrata |
Align length |
69 |
Score (bit) |
69.7 |
E-value |
7.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921504|Adiantum capillus-veneris mRNA, clone: YMU001_000150_G01. (314 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A2PZ12|A2PZ12_THUDO Putatibe ubiquitin fusion degradation pro... 70 7e-11 tr|A2PZ13|A2PZ13_9CONI Putatibe ubiquitin fusion degradation pro... 67 4e-10 tr|A2PZ11|A2PZ11_CRYJA Putatibe ubiquitin fusion degradation pro... 67 4e-10 tr|A2PZ10|A2PZ10_CRYJA Putatibe ubiquitin fusion degradation pro... 67 4e-10 tr|A2PZ19|A2PZ19_CHAOB Putatibe ubiquitin fusion degradation pro... 66 8e-10 tr|A2PZ17|A2PZ17_CHAOB Putatibe ubiquitin fusion degradation pro... 66 8e-10 tr|A2PZ14|A2PZ14_9CONI Putatibe ubiquitin fusion degradation pro... 66 8e-10 tr|Q6CQY9|Q6CQY9_KLULA KLLA0D13178p OS=Kluyveromyces lactis GN=K... 35 1.9 tr|Q55DL8|Q55DL8_DICDI C2H2-type Zn finger-containing protein OS... 34 4.2 tr|Q4V8W9|Q4V8W9_DANRE Zgc:114104 OS=Danio rerio GN=zgc:114104 P... 33 5.5 tr|B6P8X2|B6P8X2_BRAFL Putative uncharacterized protein OS=Branc... 33 5.5 tr|B6LWF6|B6LWF6_BRAFL Putative uncharacterized protein OS=Branc... 33 5.5 tr|B4JNQ8|B4JNQ8_DROGR GH24095 OS=Drosophila grimshawi GN=GH2409... 33 5.5 tr|A7RUD1|A7RUD1_NEMVE Predicted protein OS=Nematostella vectens... 33 5.5 tr|Q16IJ2|Q16IJ2_AEDAE Putative uncharacterized protein OS=Aedes... 33 9.3 tr|Q16FF2|Q16FF2_AEDAE Putative uncharacterized protein OS=Aedes... 33 9.3
>tr|A2PZ12|A2PZ12_THUDO Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Thujopsis dolabrata GN=CC0822 PE=4 SV=1 Length = 179
Score = 69.7 bits (169), Expect = 7e-11 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D L+NAHLD EHF+ H V E D + + R++ V+CPICG++VHSERD Sbjct: 111 SDWLLNAHLDKEHFTNIAHDSVLEDPPSIPDDSLHTQDTSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+DMVH Sbjct: 171 LSQHIDMVH 179
>tr|A2PZ13|A2PZ13_9CONI Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Chamaecyparis formosensis GN=CC0822 PE=4 SV=1 Length = 179
Score = 67.0 bits (162), Expect = 4e-10 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 AD +NAHLD EHF+ H V E D + R++ V+CPICG++VHSERD Sbjct: 111 ADWQLNAHLDKEHFTSIAHDSVLEDAPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|A2PZ11|A2PZ11_CRYJA Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Cryptomeria japonica GN=CC0822 PE=4 SV=1 Length = 179
Score = 67.0 bits (162), Expect = 4e-10 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D +NAHLD EHF+ TH V E D + R++ V+CPICG++VHSERD Sbjct: 111 SDWQLNAHLDKEHFTSITHDSVLEDPPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|A2PZ10|A2PZ10_CRYJA Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Cryptomeria japonica GN=CC0822 PE=4 SV=1 Length = 179
Score = 67.0 bits (162), Expect = 4e-10 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D +NAHLD EHF+ TH V E D + R++ V+CPICG++VHSERD Sbjct: 111 SDWQLNAHLDKEHFTSITHDSVLEDPPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|A2PZ19|A2PZ19_CHAOB Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Chamaecyparis obtusa GN=CC0822 PE=4 SV=1 Length = 179
Score = 66.2 bits (160), Expect = 8e-10 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D +NAHLD EHF+ H V E D + R++ V+CPICG++VHSERD Sbjct: 111 SDWQLNAHLDKEHFTHIAHDSVLEDAPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|A2PZ17|A2PZ17_CHAOB Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Chamaecyparis obtusa GN=CC0822 PE=4 SV=1 Length = 179
Score = 66.2 bits (160), Expect = 8e-10 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D +NAHLD EHF+ H V E D + R++ V+CPICG++VHSERD Sbjct: 111 SDWQLNAHLDKEHFTHIAHDSVLEDAPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|A2PZ14|A2PZ14_9CONI Putatibe ubiquitin fusion degradation protein 1 (Fragment) OS=Chamaecyparis pisifera GN=CC0822 PE=4 SV=1 Length = 179
Score = 66.2 bits (160), Expect = 8e-10 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = -3
Query: 312 ADTLMNAHLDDEHFSRTTHHPV-EQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERD 136 +D +NAHLD EHF+ H V E D + R++ V+CPICG++VHSERD Sbjct: 111 SDWQLNAHLDKEHFTNIAHDSVLEDAPSIPDDSLHTQDMSLRTMLVSCPICGMSVHSERD 170
Query: 135 LSVHMDMVH 109 LS H+D+VH Sbjct: 171 LSQHIDLVH 179
>tr|Q6CQY9|Q6CQY9_KLULA KLLA0D13178p OS=Kluyveromyces lactis GN=KLLA0D13178g PE=4 SV=1 Length = 524
Score = 35.0 bits (79), Expect = 1.9 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = -3
Query: 243 QGQGDQDMNAALSSSYKRSL-SVACPICGLAVHSERDLSVHMDMVH 109 +G G +A+ + + R++ +V CP+CG + S R L+VH+D VH Sbjct: 3 EGNGRWLGSASSTGQHDRNVEAVTCPVCGNELKSLRKLNVHLDNVH 48
>tr|Q55DL8|Q55DL8_DICDI C2H2-type Zn finger-containing protein OS=Dictyostelium discoideum GN=gxcT PE=4 SV=1 Length = 1574
Score = 33.9 bits (76), Expect = 4.2 Identities = 19/55 (34%), Positives = 23/55 (41%) Frame = -3
Query: 273 FSRTTHHPVEQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERDLSVHMDMVH 109 F+ T V S+S + V CPIC SER LSVH+D H Sbjct: 1029 FANKTPTKVTTTTSSSSTTTTSSNSSSTTTEVVCPICQQRFQSERVLSVHLDDWH 1083
>tr|Q4V8W9|Q4V8W9_DANRE Zgc:114104 OS=Danio rerio GN=zgc:114104 PE=2 SV=1 Length = 492
Score = 33.5 bits (75), Expect = 5.5 Identities = 23/85 (27%), Positives = 36/85 (42%) Frame = -3
Query: 297 NAHLDDEHFSRTTHHPVEQGQGDQDMNAALSSSYKRSLSVACPICGLAVHSERDLSVHMD 118 N + +H+S H ++ Q QDM + +++ S+ CPIC L + S HM Sbjct: 122 NPLVAQQHYSGRKH---QRNQARQDMLDQMGEKSEQASSLTCPICCLTLSSIEMYQSHMQ 178
Query: 117 MVH*WLIITNYFGLGKQQKRSYADF 43 + L K QK+ Y F Sbjct: 179 GNKHLIKEKKVIDLCKSQKKVYNSF 203
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