BP921440
Clone id YMU001_000149_H10
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATTCGCGGCCGCGAATTCTTCCAGTTCTCCTCACAGGTATATGATACCTGCATCCAACA
GCTGATTAATTTCTTGCCAAAGGGCTTCCTTTTGAATCTCCCCTAACCTCCTTAGCTTCT
GCACCTTTAGTTTGTACCCTTCTTTGGGGATTATCTTGTGCTCTACACACTTTGCTTCTC
GTAGATCCTTGTACTTTGTCGCAAACAGATTTGGGAAAGAGGCACATAGTTTGACATAGC
CTTCTCTCCCTTGCTTGGTCAAATCTTCACTTAGCATAGCGGCTACCTCCTTCGCGCCTA
TGCCATGAACCTATGGTTGCACCTCTCCTTTTATGTGAGAGCCTTTGACGCTGACAGAAG
AAAACCGGAACACAACACCTCTATAGCTTGGCCTCTCTGCCAGCTCGAGAGCACGGAACC
ACCTACTCAAAACACCTGCAGCATGACCTTAGAGACACTCTCCAAACTTGCACCTCAAAC
CCCCGGCCATAAGGCTTTACAACAC
■■Homology search results ■■ -
sp_hit_id Q8CRF7
Definition sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epidermidis (strain ATCC 12228)
Align length 47
Score (bit) 30.0
E-value 5.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921440|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_H10.
(478 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus epide... 30 5.6
sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus epide... 30 5.6
sp|Q8DQZ7|DPO4_STRR6 DNA polymerase IV OS=Streptococcus pneumoni... 30 7.4
sp|Q04M21|DPO4_STRP2 DNA polymerase IV OS=Streptococcus pneumoni... 30 7.4
sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1 ... 30 7.4
sp|Q97SC7|DPO4_STRPN DNA polymerase IV OS=Streptococcus pneumoni... 29 9.6

>sp|Q8CRF7|TOP3_STAES DNA topoisomerase 3 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=topB PE=3 SV=1
Length = 711

Score = 30.0 bits (66), Expect = 5.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Frame = -1

Query: 169 KYKDLREAKCVEHKIIPKEGYKLKV---------QKLRRLGEIQKEA 56
+YKD +E + +EHKI +EG L+V Q L L ++Q+EA
Sbjct: 232 RYKDKKELELIEHKIKHQEGKILEVKGKNKKSYAQPLFNLTDLQQEA 278


>sp|Q5HLZ4|TOP3_STAEQ DNA topoisomerase 3 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=topB PE=3
SV=1
Length = 711

Score = 30.0 bits (66), Expect = 5.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Frame = -1

Query: 169 KYKDLREAKCVEHKIIPKEGYKLKV---------QKLRRLGEIQKEA 56
+YKD +E + +EHKI +EG L+V Q L L ++Q+EA
Sbjct: 232 RYKDKKELELIEHKIKHQEGKILEVKGKNKKSYAQPLFNLTDLQQEA 278


>sp|Q8DQZ7|DPO4_STRR6 DNA polymerase IV OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=dinB PE=3 SV=2
Length = 353

Score = 29.6 bits (65), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -1

Query: 169 KYKDLREAKCVEHKIIPKEGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
+Y DL E ++ + KL ++ ++ + ++ +WQE++ AGI Y
Sbjct: 105 RYTDLIEPMSIDEAYLDVTENKLGIKSAVKIARLIQKDIWQELHLTASAGISY 157


>sp|Q04M21|DPO4_STRP2 DNA polymerase IV OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=dinB PE=3 SV=1
Length = 353

Score = 29.6 bits (65), Expect = 7.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -1

Query: 169 KYKDLREAKCVEHKIIPKEGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
+Y DL E ++ + KL ++ ++ + ++ +WQE++ AGI Y
Sbjct: 105 RYTDLIEPMSIDEAYLDVTENKLGIKSAVKIARLIQKDIWQELHLTASAGISY 157


>sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1 SV=3
Length = 3926

Score = 29.6 bits (65), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2

Query: 344 HNTSIAWPLCQLESTEPPTQNTCSMTLETLSKLAPQTPG 460
H ++ PLC T+P T T ++S+L P+ PG
Sbjct: 1573 HASASTSPLCSPTETQPTTHGYSQTTPPSVSQLPPEPPG 1611


>sp|Q97SC7|DPO4_STRPN DNA polymerase IV OS=Streptococcus pneumoniae
GN=dinB PE=3 SV=2
Length = 353

Score = 29.3 bits (64), Expect = 9.6
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -1

Query: 169 KYKDLREAKCVEHKIIPKEGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
+Y DL E ++ + KL ++ ++ + ++ +WQE++ AG+ Y
Sbjct: 105 RYTDLIEPMSIDEAYLDVTENKLGIKSAVKIARLIQKDIWQELHLTASAGVSY 157


tr_hit_id Q7FAL2
Definition tr|Q7FAL2|Q7FAL2_ORYSJ OSJNBa0042N22.17 protein (B1248C03.3 protein) OS=Oryza sativa subsp. japonica
Align length 90
Score (bit) 42.4
E-value 0.012
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921440|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_H10.
(478 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7FAL2|Q7FAL2_ORYSJ OSJNBa0042N22.17 protein (B1248C03.3 prot... 42 0.012
tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 42 0.015
tr|Q2QZM9|Q2QZM9_ORYSJ Retrotransposon protein, putative, unclas... 42 0.015
tr|Q2QT15|Q2QT15_ORYSJ Retrotransposon protein, putative, Ty3-gy... 42 0.015
tr|Q2QT57|Q2QT57_ORYSJ Retrotransposon protein, putative, Ty3-gy... 41 0.026
tr|Q10RL2|Q10RL2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 41 0.026
tr|Q7XP80|Q7XP80_ORYSJ OSJNBa0021F22.20 protein OS=Oryza sativa ... 40 0.044
tr|Q7X7H5|Q7X7H5_ORYSA OSJNBa0085C10.2 protein OS=Oryza sativa G... 40 0.044
tr|Q53NJ5|Q53NJ5_ORYSJ Retrotransposon protein, putative, unclas... 40 0.044
tr|A5BQA5|A5BQA5_VITVI Putative uncharacterized protein OS=Vitis... 40 0.044
tr|Q6AT01|Q6AT01_ORYSJ Putative polyprotein OS=Oryza sativa subs... 40 0.058
tr|Q2R0G5|Q2R0G5_ORYSJ Retrotransposon protein, putative, unclas... 40 0.058
tr|A5B5G7|A5B5G7_VITVI Putative uncharacterized protein OS=Vitis... 40 0.058
tr|Q7XWE4|Q7XWE4_ORYSJ OSJNBa0035O13.3 protein OS=Oryza sativa s... 39 0.098
tr|Q7XN29|Q7XN29_ORYSJ OSJNBa0083I11.15 protein (OSJNBa0021F22.2... 39 0.098
tr|Q8LM44|Q8LM44_ORYSJ Putative retroelement (Retrotransposon pr... 39 0.13
tr|Q2QPX1|Q2QPX1_ORYSJ Transposon protein, putative, unclassifie... 39 0.13
tr|Q75K86|Q75K86_ORYSJ Putative uncharacterized protein OJ1118_C... 39 0.17
tr|Q7XWB8|Q7XWB8_ORYSJ OSJNBa0061A09.8 protein OS=Oryza sativa s... 38 0.22
tr|Q2R463|Q2R463_ORYSJ Retrotransposon protein, putative, Ty3-gy... 38 0.22
tr|Q2R3G7|Q2R3G7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 38 0.22
tr|Q01MY6|Q01MY6_ORYSA OSIGBa0160I04.5 protein OS=Oryza sativa G... 38 0.22
tr|Q84NX2|Q84NX2_ORYSJ Putative GAG-POL OS=Oryza sativa subsp. j... 38 0.29
tr|Q7FA52|Q7FA52_ORYSJ OSJNBa0018J19.4 protein OS=Oryza sativa s... 38 0.29
tr|Q53Q04|Q53Q04_ORYSJ Retrotransposon protein, putative, unclas... 38 0.29
tr|Q53MU3|Q53MU3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 38 0.29
tr|Q53MT8|Q53MT8_ORYSJ Retrotransposon protein, putative, unclas... 38 0.29
tr|Q53LQ2|Q53LQ2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 38 0.29
tr|Q53K44|Q53K44_ORYSJ Retrotransposon protein, putative, unclas... 38 0.29
tr|Q2R6L9|Q2R6L9_ORYSJ Retrotransposon protein, putative, unclas... 38 0.29

>tr|Q7FAL2|Q7FAL2_ORYSJ OSJNBa0042N22.17 protein (B1248C03.3 protein)
OS=Oryza sativa subsp. japonica GN=OSJNBa0042N22.17 PE=4
SV=1
Length = 1436

Score = 42.4 bits (98), Expect = 0.012
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -1

Query: 277 GIGAKEVAAMLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPKEGYK 104
G G + +S++L+ + R ++L F + FA +Y ++ VEH++ K G+K
Sbjct: 1061 GPGDRPRPTFISKNLSSEFRTKLIELLKEFRDCFAWEYHEMPGLSRSIVEHRLPLKPGFK 1120

Query: 103 LKVQKLRRLGEIQKEALWQEINQLLDAGII 14
Q LRR E + EI +L DAG I
Sbjct: 1121 PYQQPLRRCKADMLEPVKAEIKRLYDAGFI 1150


>tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g44770 PE=4 SV=1
Length = 1980

Score = 42.0 bits (97), Expect = 0.015
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = -1

Query: 250 MLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPKEGYKLKVQKLRRL 77
++ E+L K E +K+ +FA +L+ + +EH + K GYK K QKLRR+
Sbjct: 936 LIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRM 995

Query: 76 GEIQKEALWQEINQLLDAGII 14
+++A E+ +LL A +I
Sbjct: 996 STDRQQAAKIELEKLLKAKVI 1016


>tr|Q2QZM9|Q2QZM9_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os11g45440 PE=4 SV=1
Length = 431

Score = 42.0 bits (97), Expect = 0.015
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = -1

Query: 277 GIGAKEVAAMLSEDLTKQGREGYVKLCASFPNLFATKYKDLREAK--CVEHKIIPKEGYK 104
G G K +S++L+ + R ++L + + FA +Y ++ V+H++ K GY+
Sbjct: 318 GPGDKPRPTFISKNLSSEFRTKLIELLKEYRDCFAWEYFEMPGLSRLIVQHRLPIKPGYR 377

Query: 103 LKVQKLRRLGEIQKEALWQEINQLLDAGII 14
L Q RR EA+ EI +L DAG I
Sbjct: 378 LYKQPPRRCKADMFEAIKAEIKRLYDAGFI 407


>tr|Q2QT15|Q2QT15_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g22200 PE=4 SV=1
Length = 1889

Score = 42.0 bits (97), Expect = 0.015
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = -1

Query: 250 MLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPKEGYKLKVQKLRRL 77
++ E+L K E +K+ +FA +L+ + +EH + K GYK K QKLRR+
Sbjct: 936 LIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRM 995

Query: 76 GEIQKEALWQEINQLLDAGII 14
+++A E+ +LL A +I
Sbjct: 996 STDRQQAAKIELEKLLKAKVI 1016


>tr|Q2QT57|Q2QT57_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g21780 PE=4 SV=1
Length = 1541

Score = 41.2 bits (95), Expect = 0.026
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = -1

Query: 238 DLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPKEGYKLKVQKLRRLGEIQ 65
D TK + + ++FA K D+ + +EH ++ KE K Q+LRR + +
Sbjct: 737 DPTKTAESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLLVKEDAKPIKQRLRRFAQDR 796

Query: 64 KEALWQEINQLLDAGII 14
K+A+ +E+ +LL AG I
Sbjct: 797 KDAIKEELTKLLAAGFI 813


>tr|Q10RL2|Q10RL2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os03g05960 PE=4 SV=1
Length = 504

Score = 41.2 bits (95), Expect = 0.026
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = -1

Query: 250 MLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPKEGYKLKVQKLRRL 77
++ E+L K+ E +K+ + ++FA ++L E +EH + K +K K QKLRR+
Sbjct: 287 LIGENLEKEVEEEILKVVKANTDVFAWSPEELEGVERSLIEHNLAIKPEHKPKKQKLRRI 346

Query: 76 GEIQKEALWQEINQLLDAGII 14
+++A E+ +LL A +I
Sbjct: 347 SIDRQQAAKAELEKLLKAKVI 367


>tr|Q7XP80|Q7XP80_ORYSJ OSJNBa0021F22.20 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0021F22.20 PE=4 SV=2
Length = 861

Score = 40.4 bits (93), Expect = 0.044
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1

Query: 289 P*VHGIGAKEVAAMLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPK 116
P V +G + +S++L+ + R ++L F + FA +Y ++ VEH++ K
Sbjct: 20 PGVPAVGDQPRPTFISKNLSSEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIK 79

Query: 115 EGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
G + + Q RR E + EI +L DAG I+
Sbjct: 80 PGVRPRQQPPRRCKADMLEPVKAEIKRLYDAGFIH 114


>tr|Q7X7H5|Q7X7H5_ORYSA OSJNBa0085C10.2 protein OS=Oryza sativa
GN=OSJNBa0085C10.2 PE=4 SV=1
Length = 861

Score = 40.4 bits (93), Expect = 0.044
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1

Query: 289 P*VHGIGAKEVAAMLSEDLTKQGREGYVKLCASFPNLFATKYKDLR--EAKCVEHKIIPK 116
P V +G + +S++L+ + R ++L F + FA +Y ++ VEH++ K
Sbjct: 20 PGVPAVGDQPRPTFISKNLSSEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIK 79

Query: 115 EGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
G + + Q RR E + EI +L DAG I+
Sbjct: 80 PGVRPRQQPPRRCKADMLEPVKAEIKRLYDAGFIH 114


>tr|Q53NJ5|Q53NJ5_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os11g08630 PE=4 SV=1
Length = 162

Score = 40.4 bits (93), Expect = 0.044
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1

Query: 277 GIGAKEVAAMLSEDLTKQGREGYVKLCASFPNLFATKYKDLREA--KCVEHKIIPKEGYK 104
G G + +S++L+ + R +KL F + FA +Y ++ VEH++ K G +
Sbjct: 46 GPGDRPRPTFISKNLSSKFRTKLIKLLKEFRDCFAWEYHEMPGLCRSIVEHRLPLKPGIR 105

Query: 103 LKVQKLRRLGEIQKEALWQEINQLLDAGII 14
Q LRR E + EI +L DAG I
Sbjct: 106 PHKQPLRRCKADMLEPVKAEIKRLYDAGFI 135


>tr|A5BQA5|A5BQA5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_021906 PE=4 SV=1
Length = 399

Score = 40.4 bits (93), Expect = 0.044
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -1

Query: 133 HKIIPKEGYKLKVQKLRRLGEIQKEALWQEINQLLDAGIIY 11
HKI+ +E Y+ VQ RRL +E + +E+ +LLDAGIIY
Sbjct: 171 HKILFEENYRPTVQPQRRLNPSMQEVVKKEVVKLLDAGIIY 211