BP921336
Clone id YMU001_000148_F04
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGGAAATATCAGCTCACAGAATCCCTACCAGTCTACACTGTGCAAGGCACTTAAGAATCC
CTACCAGTCTACATTGTGCAAGGCACTTATAGTTTTGGTTCTCACGTTGAGGCCATCACT
CTTCGCACGGGTTTACAATTCTGCATGCAAAGCATGCTAGGGCGATGGATTTGATTCTAC
CGCTTCATGCATTACGCTTCCGCTATCACACTCGCAGCTCTGTCAAGGACAGACTAAGAA
TGGATTGTTAATATGATTGTTGGTTGCTATCAACACACAACAACACTAAAAAGAACCTAA
AATTTTGACTAGATTCACCGACAAAGTGTCCTATTCAAGTCATCCTCCTACAATCACGAC
CCGTACACGGTAGATGGTCAAGATTTGAATTGTGTATTATGTTGCCTCTCTTGATGAGAG
CGTCATACAGAAAGATTCTTGTATGCTTATAGGATAAGCTGCAAATCAGGCATAAGATGC
CT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921336|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F04.
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A7T327
Definition tr|A7T327|A7T327_NEMVE Predicted protein OS=Nematostella vectensis
Align length 58
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921336|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F04.
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7T327|A7T327_NEMVE Predicted protein OS=Nematostella vectens... 35 2.4
tr|B7U381|B7U381_HRSV Glycoprotein (Fragment) OS=Human respirato... 33 7.0

>tr|A7T327|A7T327_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g143825 PE=4 SV=1
Length = 244

Score = 34.7 bits (78), Expect = 2.4
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +3

Query: 33 LHCARHLRIPTSLHCARHL*FWFSR*GHHSSHGFTILHAKHARAMDLILPLHALRFRY 206
LHC RHL + LHC RHL + H H +L R L+L H R R+
Sbjct: 95 LHCMRHLVLQYHLHCMRHLVLQYHL--HRMQH--LVLQYHLHRMQHLVLQYHLHRMRH 148



Score = 32.7 bits (73), Expect = 9.2
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3

Query: 33 LHCARHLRIPTSLHCARHL*FWFSR*GHHSSHGFTILHAKHARAMDLILPLHALR---FR 203
LHC RHL + LHC RHL + H H H + + L LH ++ +
Sbjct: 35 LHCMRHLVLQYHLHCMRHLVLQYHL--HRMQHLVLQYHLHRMQHLVLQYHLHCMQHLVLQ 92

Query: 204 YH 209
YH
Sbjct: 93 YH 94


>tr|B7U381|B7U381_HRSV Glycoprotein (Fragment) OS=Human respiratory
syncytial virus GN=G PE=4 SV=1
Length = 107

Score = 33.1 bits (74), Expect = 7.0
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Frame = +3

Query: 15 HRIPTSLHCARHLRIPT--------SLHCARHL*FWFSR*GHHSSHGFTIL-----HAKH 155
H+ PT +HCARH I T ++HCARH H +H T + KH
Sbjct: 31 HQYPT-IHCARHNHIKTHRKRHQHLTIHCARH--------NHIKTHNSTAIPLLNHPRKH 81

Query: 156 ARAMDLILPLHALRFRYHTRSSV 224
+ + AL ++H ++ V
Sbjct: 82 NQLHTNTHSIRALHIKFHPKTLV 104