BP921333
Clone id YMU001_000148_E12
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCCCTCCCATTGCAACAAAGAAAATCCATATAATCATACCCAATCTCCCTGGGATAAGCC
TCGATAATTTTCTTGAACAAGCTCAGCATATAAGGATACACATAAGTGTTACCCTTGGTC
ACAGCAATATACATCAAGAAAGACATTTCACCATCAGGGTGACATTTGCAATAAAGAAGT
TGGTCATAGGAAGGAGAAGGCAATTACGCAACATCTGTGAAGCAGAGTAAACAAAAAAAA
TTGCTCCAAATTGAGATACCAATGAAAACAGGTGATGAAAAAGCAGTCGTGCACCTTTGC
TTTGAGGACCAAAGACCACAAGCCATGTGTCCATTGAGAGTGTAGCTGTCAGAAAACACA
AGCTGAAATGTCCCTTGAGCTAAGAATCCATCAATGTTAAACCGGAAGCAAGAAACACTG
ATCGATGCTAAGTACCAATAGGCCTTTCCCTCCCCTTCTCACAAGACA
■■Homology search results ■■ -
sp_hit_id Q9SRR1
Definition sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana
Align length 45
Score (bit) 32.0
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921333|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_E12.
(455 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis... 32 1.3
sp|Q6YK37|XYNC2_BACSU Glucuronoxylanase xynC OS=Bacillus subtili... 31 2.9
sp|Q9BUN1|CA056_HUMAN Uncharacterized protein C1orf56 OS=Homo sa... 30 3.8
sp|P38279|YBZ7_YEAST Uncharacterized membrane protein YBR147W OS... 30 6.4
sp|A7HME4|SYD_FERNB Aspartyl-tRNA synthetase OS=Fervidobacterium... 30 6.4
sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis... 30 6.4
sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor E... 29 8.4

>sp|Q9SRR1|FBL12_ARATH F-box/LRR-repeat protein 12 OS=Arabidopsis
thaliana GN=FBL12 PE=2 SV=1
Length = 395

Score = 32.0 bits (71), Expect = 1.3
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1

Query: 278 HDCFFITCFHWYLNLEQFFLFTLLHRCCVIAFSFL*PTSLLQMSP 144
HD F +TC W LN++ +L +C +FS L P+SL Q +P
Sbjct: 36 HDSFGLTCHRW-LNIQNISRRSLQFQC---SFSVLNPSSLSQTNP 76


>sp|Q6YK37|XYNC2_BACSU Glucuronoxylanase xynC OS=Bacillus subtilis
GN=xynC PE=3 SV=2
Length = 423

Score = 30.8 bits (68), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1

Query: 100 PWSQQYTSRKTFHHQGDICNKEVGHRKEKAITQHL*SRVN 219
PW+ +TF+H GD K + + K A QHL VN
Sbjct: 116 PWNPPNDMVETFNHNGDTSAKRLRYDKYAAYAQHLNDFVN 155


>sp|Q9BUN1|CA056_HUMAN Uncharacterized protein C1orf56 OS=Homo
sapiens GN=C1orf56 PE=2 SV=1
Length = 341

Score = 30.4 bits (67), Expect = 3.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1

Query: 289 LRTKDHKPCVH*ECSCQKTQAEMSLELRI-HQC*TGSKKH*SMLSTNRPFPPLLTR 453
LRT +HKPC + +C C + + E L+ + S+ S +T PFP + R
Sbjct: 241 LRT-EHKPCTYQQCPCNRLREECPLDTSLCTDTNCASQSTTSTRTTTTPFPTIHLR 295


>sp|P38279|YBZ7_YEAST Uncharacterized membrane protein YBR147W
OS=Saccharomyces cerevisiae GN=YBR147W PE=1 SV=1
Length = 296

Score = 29.6 bits (65), Expect = 6.4
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Frame = -3

Query: 351 SLCFLTATLSMDTWLVVFGPQ---------SKGARLLFHHLFSLVSQFGAIFFVYSA-SQ 202
+L + ++S+ W+VVF PQ ++G LLF L+ L G IF V A Q
Sbjct: 12 NLSGMAGSISICCWIVVFVPQIYENFRRQSAEGLSLLFIVLWLL----GDIFNVMGAMMQ 67

Query: 201 MLRNCLLLPMTNFFIANVTLMVKCL 127
L +++ + +A++ L+++C+
Sbjct: 68 NLLPTMIILAAYYTLADLILLIQCM 92


>sp|A7HME4|SYD_FERNB Aspartyl-tRNA synthetase OS=Fervidobacterium
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=aspS
PE=3 SV=1
Length = 576

Score = 29.6 bits (65), Expect = 6.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2

Query: 154 KCHPDGEMSFLMYIAVTKGNTYVYPYMLSLFKKII 50
K P+G FL+ + KGN Y P LFK+I+
Sbjct: 166 KSTPEGARDFLVPSRLKKGNFYALPQSPQLFKQIL 200


>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis
elegans GN=ptr-9 PE=2 SV=2
Length = 844

Score = 29.6 bits (65), Expect = 6.4
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3

Query: 243 SQFGAIFFVYSASQMLRNCLLLPMTNFFIANVTLMVKCLS*CILL*PR-VTLMCI 82
SQF FVY S +L + + + N + V+ ++ LS C+L+ PR V+ MCI
Sbjct: 645 SQFNG--FVYDTSFLLVDQQMTTVYNVIVDVVSAILTMLSICVLMVPRPVSAMCI 697


>sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor
ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1
Length = 245

Score = 29.3 bits (64), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2

Query: 439 EGKAYWYLASISVSCFRFNIDGFLAQGT 356
E +YW +A S+ F F +DGF+ Q +
Sbjct: 199 ETDSYWNVAHASIDTFAFELDGFVDQNS 226


tr_hit_id Q552I0
Definition tr|Q552I0|Q552I0_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 70
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921333|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_E12.
(455 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q552I0|Q552I0_DICDI Putative uncharacterized protein OS=Dicty... 33 7.1
tr|B0EC65|B0EC65_ENTDI Caldesmon, putative OS=Entamoeba dispar S... 33 7.1

>tr|Q552I0|Q552I0_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0203512 PE=4 SV=1
Length = 1186

Score = 33.1 bits (74), Expect = 7.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2

Query: 430 AYWYLASISVSCFR-FNIDGFLAQGTFQLVFSDSYTLNGHMACGLWSSKQRCTTAFSSPV 254
++ Y+ SIS++ +NIDG G+ +F S++ + L+ + CT SP
Sbjct: 803 SFLYIKSISINTVGIYNIDGL---GSLSTIFYGSFSTSDSNFVSLYIGEVECTINSISPT 859

Query: 253 FIGISIWSNF 224
I S SNF
Sbjct: 860 LINFSHTSNF 869


>tr|B0EC65|B0EC65_ENTDI Caldesmon, putative OS=Entamoeba dispar
SAW760 GN=EDI_319250 PE=4 SV=1
Length = 495

Score = 33.1 bits (74), Expect = 7.1
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1

Query: 16 YNHTQSPWDKPR*FS*TSSAYKDTHKCYPWSQQYTSRKTFHHQGDICNKEVGHRKEKAIT 195
++H + PW K H+ + W + RK HHQ + +KE +K +
Sbjct: 114 HHHRRHPWRKHH------------HRRHSWKRYRPRRK--HHQRRLSSKE--RKKAQLRR 157

Query: 196 QHL*SRVNKKNCSKL----RYQ*KQVMKKQ 273
+ L ++ KKN K +YQ K++ KKQ
Sbjct: 158 RMLKKKMTKKNIMKFFKRKQYQSKKISKKQ 187