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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921262
Clone id YMU001_000147_F04
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTCAGACAGCGCCCTCTCGCTCGGCTGTGCTAGCTACGCCACCTCAGTGCCCCCATAC
CGCCTTCTATATCTAGCAACGACTTTTGAACTGTTTTTTCCATCCTCAGTTAGTCCTTCT
TACCTCTTCAATCGGTTGATCTACCAATGATTGACCCCCATGATAAATCAGTTGACCATG
CTTCCCACGTGTATAACACAACTGTGATAGCTGCCAGCATGTATCACATTAATATGCACA
CCAAGCAACGAGCAAGAAACATTTAACTACATCTTGGGCTAGCACACTCAGTAAGCCACC
AATGCACTGGGAAAAAGCATCCTGGACTCTTCCTTCAGCCTGGATGAACGAGAATGTACC
CCCTGAGACCTCACATATGACATGCATGATAGAAGCATCATGATTAGATCCAAAGCCAAA
AGCACGAAATGCTCCGACTGGTATCAAGCACGACAACGAGATTGATAGGGGCATGGGATT
GAGGCCTTCGAGGACAAAAAGAGGGAGATGCA
■■Homology search results ■■ -
sp_hit_id Q09130
Definition sp|Q09130|IF2G_SCHPO Eukaryotic translation initiation factor 2 subunit gamma OS=Schizosaccharomyces pombe
Align length 64
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921262|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_F04.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09130|IF2G_SCHPO Eukaryotic translation initiation factor 2 ...    32   1.7  
sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal regi...    31   2.9  
sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region...    30   5.0  
sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal regi...    30   8.5  

>sp|Q09130|IF2G_SCHPO Eukaryotic translation initiation factor 2
           subunit gamma OS=Schizosaccharomyces pombe GN=tif213
           PE=2 SV=1
          Length = 446

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 168 SVDHASHVYNTTVIAASMYHINMHTKQRARNI*LHLGLAHSVSHQCTGKKHPGLFLQPG* 347
           ++ H +H  +T V A S  H      +  RNI + LG A++  ++C+ ++ P    +PG 
Sbjct: 28  TIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECP----RPGC 83

Query: 348 TRMY 359
            R Y
Sbjct: 84  YRSY 87


>sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal region
           2 gene A protein OS=Homo sapiens GN=LOH11CR2A PE=2 SV=2
          Length = 786

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 423 AFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVLAQDV 268
           +FG G     S++  I   SGGT  FI  + R+Q    + +   L  + +DV
Sbjct: 418 SFGIGEGTSTSLIKGIARASGGTSEFITGKDRMQSKALRTLKRSLQPVVEDV 469


>sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region 2
           gene A protein homolog OS=Rattus norvegicus GN=Loh11cr2a
           PE=2 SV=1
          Length = 822

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 423 AFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQ 322
           +FG G     S++  I  VSGGT  FI  + R+Q
Sbjct: 418 SFGIGQGASTSLIKNIARVSGGTAEFITGKDRMQ 451


>sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal region
           2 gene A protein homolog OS=Mus musculus GN=Loh11cr2a
           PE=1 SV=2
          Length = 793

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 423 AFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQ 322
           +FG G     S++  I  VSGGT  FI  + R+Q
Sbjct: 418 SFGIGQGASTSLIKNIARVSGGTAVFITGKDRMQ 451
tr_hit_id A5BI34
Definition tr|A5BI34|A5BI34_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 59
Score (bit) 83.2
E-value 4.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921262|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_F04.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BI34|A5BI34_VITVI Putative uncharacterized protein OS=Vitis...    83   4e-15
tr|A7NZL5|A7NZL5_VITVI Chromosome chr6 scaffold_3, whole genome ...    83   4e-15
tr|Q9M1S2|Q9M1S2_ARATH Putative uncharacterized protein T5N23_14...    82   1e-14
tr|Q84WA3|Q84WA3_ARATH Putative uncharacterized protein At3g5478...    82   1e-14
tr|Q8H922|Q8H922_ORYSJ Putative uncharacterized protein OSJNBa00...    81   3e-14
tr|Q7G2L9|Q7G2L9_ORYSJ Os10g0464500 protein OS=Oryza sativa subs...    81   3e-14
tr|A3C5J1|A3C5J1_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A2Z8A0|A2Z8A0_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A7PI33|A7PI33_VITVI Chromosome chr13 scaffold_17, whole genom...    80   4e-14
tr|A5BTD1|A5BTD1_VITVI Putative uncharacterized protein OS=Vitis...    80   4e-14
tr|Q9FF49|Q9FF49_ARATH Retroelement pol polyprotein-like OS=Arab...    80   6e-14
tr|Q8L849|Q8L849_ARATH Putative uncharacterized protein At5g6071...    80   6e-14
tr|A5B5Z1|A5B5Z1_VITVI Putative uncharacterized protein OS=Vitis...    80   6e-14
tr|Q9LN03|Q9LN03_ARATH T6D22.13 OS=Arabidopsis thaliana GN=At1g0...    80   8e-14
tr|Q84WR2|Q84WR2_ARATH Putative uncharacterized protein At1g0805...    80   8e-14
tr|Q10RY0|Q10RY0_ORYSJ Os03g0142500 protein OS=Oryza sativa subs...    79   1e-13
tr|Q8S9I2|Q8S9I2_ARATH At2g38970/T7F6.14 OS=Arabidopsis thaliana...    78   1e-13
tr|Q9ZV10|Q9ZV10_ARATH Putative retroelement pol polyprotein OS=...    78   1e-13
tr|B6SXK5|B6SXK5_MAIZE Protein binding protein OS=Zea mays PE=2 ...    76   2e-13
tr|Q6K937|Q6K937_ORYSJ Os02g0619600 protein OS=Oryza sativa subs...    78   3e-13
tr|B8AFH9|B8AFH9_ORYSI Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|A3A951|A3A951_ORYSJ Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|A3C5J3|A3C5J3_ORYSJ Putative uncharacterized protein OS=Oryza...    76   8e-13
tr|Q8H924|Q8H924_ORYSJ Putative uncharacterized protein OSJNBa00...    76   8e-13
tr|A2Z8A2|A2Z8A2_ORYSI Putative uncharacterized protein OS=Oryza...    76   8e-13
tr|Q948G7|Q948G7_ORYSA Putative uncharacterized protein OSJNBa00...    76   1e-12
tr|Q6K8E9|Q6K8E9_ORYSJ Os02g0806700 protein OS=Oryza sativa subs...    76   1e-12
tr|B8AEF5|B8AEF5_ORYSI Putative uncharacterized protein OS=Oryza...    76   1e-12
tr|A3ACH0|A3ACH0_ORYSJ Putative uncharacterized protein OS=Oryza...    76   1e-12
tr|A7QCT4|A7QCT4_VITVI Chromosome undetermined scaffold_79, whol...    75   1e-12

>tr|A5BI34|A5BI34_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037547 PE=4 SV=1
          Length = 1324

 Score = 83.2 bits (204), Expect(2) = 4e-15
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = -3

Query: 444 IPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVLAQDV 268
           IPV    AFGFG++HDA+ MH I E SGGTFSFI+AEG +QDAF+QCIGGLLSV+ Q++
Sbjct: 420 IPV---HAFGFGTDHDATSMHAISETSGGTFSFIEAEGVIQDAFAQCIGGLLSVVVQEL 475



 Score = 21.6 bits (44), Expect(2) = 4e-15
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 266 LNVSCSLLGVHINVIHAGSYHSCV 195
           + V C    + ++ I AGSYH+ V
Sbjct: 477 VGVECVHPSLQLSSIKAGSYHTSV 500


>tr|A7NZL5|A7NZL5_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024560001
           PE=4 SV=1
          Length = 729

 Score = 83.2 bits (204), Expect(2) = 4e-15
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = -3

Query: 444 IPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVLAQDV 268
           IPV    AFGFG++HDA+ MH I E SGGTFSFI+AEG +QDAF+QCIGGLLSV+ Q++
Sbjct: 420 IPV---HAFGFGTDHDATSMHAISETSGGTFSFIEAEGVIQDAFAQCIGGLLSVVVQEL 475



 Score = 21.6 bits (44), Expect(2) = 4e-15
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 266 LNVSCSLLGVHINVIHAGSYHSCV 195
           + V C    + ++ I AGSYH+ V
Sbjct: 477 VGVECVHPSLQLSSIKAGSYHTSV 500


>tr|Q9M1S2|Q9M1S2_ARATH Putative uncharacterized protein T5N23_140
           OS=Arabidopsis thaliana GN=T5N23_140 PE=4 SV=1
          Length = 676

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 37/64 (57%), Positives = 50/64 (78%)
 Frame = -3

Query: 459 SLSCLIPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVL 280
           S   ++P  +  +FGFGS+HDAS+MH + EVSGGTFSFI++E  +QDA +QCIGGLLSV 
Sbjct: 362 SYKVMLPQISVHSFGFGSDHDASVMHSVSEVSGGTFSFIESESVIQDALAQCIGGLLSVA 421

Query: 279 AQDV 268
            Q++
Sbjct: 422 VQEL 425


>tr|Q84WA3|Q84WA3_ARATH Putative uncharacterized protein At3g54780
           (Fragment) OS=Arabidopsis thaliana GN=At3g54780 PE=2
           SV=1
          Length = 650

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 37/64 (57%), Positives = 50/64 (78%)
 Frame = -3

Query: 459 SLSCLIPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVL 280
           S   ++P  +  +FGFGS+HDAS+MH + EVSGGTFSFI++E  +QDA +QCIGGLLSV 
Sbjct: 336 SYKVMLPQISVHSFGFGSDHDASVMHSVSEVSGGTFSFIESESVIQDALAQCIGGLLSVA 395

Query: 279 AQDV 268
            Q++
Sbjct: 396 VQEL 399


>tr|Q8H922|Q8H922_ORYSJ Putative uncharacterized protein
           OSJNBa0071K18.2 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0071K18.2 PE=4 SV=1
          Length = 731

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
 Frame = -3

Query: 453 SCLIPVGA------FRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGL 292
           S L+P G         AFGFG++HD+  MH I E+SGGTFSFI A G +QDAF+QCIGGL
Sbjct: 394 SSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGL 453

Query: 291 LSVLAQDV 268
           LSV+AQ++
Sbjct: 454 LSVVAQEL 461


>tr|Q7G2L9|Q7G2L9_ORYSJ Os10g0464500 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0464500 PE=4 SV=1
          Length = 719

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
 Frame = -3

Query: 453 SCLIPVGA------FRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGL 292
           S L+P G         AFGFG++HD+  MH I E+SGGTFSFI A G +QDAF+QCIGGL
Sbjct: 394 SSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGL 453

Query: 291 LSVLAQDV 268
           LSV+AQ++
Sbjct: 454 LSVVAQEL 461


>tr|A3C5J1|A3C5J1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030563 PE=4 SV=1
          Length = 654

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
 Frame = -3

Query: 453 SCLIPVGA------FRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGL 292
           S L+P G         AFGFG++HD+  MH I E+SGGTFSFI A G +QDAF+QCIGGL
Sbjct: 317 SSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGL 376

Query: 291 LSVLAQDV 268
           LSV+AQ++
Sbjct: 377 LSVVAQEL 384


>tr|A2Z8A0|A2Z8A0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33939 PE=4 SV=1
          Length = 654

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
 Frame = -3

Query: 453 SCLIPVGA------FRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGL 292
           S L+P G         AFGFG++HD+  MH I E+SGGTFSFI A G +QDAF+QCIGGL
Sbjct: 317 SSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGL 376

Query: 291 LSVLAQDV 268
           LSV+AQ++
Sbjct: 377 LSVVAQEL 384


>tr|A7PI33|A7PI33_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018177001
           PE=4 SV=1
          Length = 666

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = -3

Query: 444 IPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVLAQDV 268
           IPV    +FGFG++HDAS MH I E+SGGTFSFI+ E  +QDAF+QCIGGLLSV+ Q++
Sbjct: 360 IPV---HSFGFGTDHDASSMHTISEISGGTFSFIETESVIQDAFAQCIGGLLSVVVQEL 415


>tr|A5BTD1|A5BTD1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016246 PE=4 SV=1
          Length = 715

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = -3

Query: 444 IPVGAFRAFGFGSNHDASIMHVICEVSGGTFSFIQAEGRVQDAFSQCIGGLLSVLAQDV 268
           IPV    +FGFG++HDAS MH I E+SGGTFSFI+ E  +QDAF+QCIGGLLSV+ Q++
Sbjct: 409 IPV---HSFGFGTDHDASSMHTISEISGGTFSFIETESVIQDAFAQCIGGLLSVVVQEL 464