BP921234
Clone id YMU001_000147_C09
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CACAAATGACTTGAGGAGCTAAAAATTACATGTTTTGAGAATCTTTCATGCCCGTGTCCA
CTCCGTTCCCATTCCATACCTTTGGCCCCATTCCTCATTCTGTTCGCATTCATGTTCCAT
GCAACCATGACAAGCATTCAGTGAACTTCCCATGATAAGAAATGATCAACCAGGAGAGCA
AAAAACAAAGAATGTCTGGGCTCCATTGTTCCAAAACATCCCTTTCCAAGTATCTTACAA
CTCTCCACCCAAAGTATACAGCTGAGTTCTGTCGCCAAGTTTTTATTATCATCGAATTGT
CAACTCCTTGAGAAGATATCCTTCTTTGCTGGTGTTGAGGATGGCGGAACCTTAGCTGGA
TCTTTTGCGGCCTTCTTCAATTCCGCAACCGCACGCTTCACATACTGGATGTAGCCATCC
ACATTGAACTTCCTCTTACACCCGTTGTAGTTCATAAAACGTATTTTTCCAAACACAGGA
CGCTCCTGCCATCCCTGATCATGTATGCCGCAAATAGACCACATGCAACCAACGTAGCCA
TTTGGATCTCTTCCGT
■■Homology search results ■■ -
sp_hit_id P34205
Definition sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus
Align length 45
Score (bit) 97.4
E-value 4.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921234|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C09.
(556 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassi... 97 4e-20
sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorou... 93 8e-19
sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methano... 68 3e-11
sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydr... 32 2.7
sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus... 31 3.6
sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapien... 31 3.6
sp|Q8ZK76|RCMNS_SALTY Regulator of cell morphogenesis and NO sig... 30 6.0
sp|Q8Z157|RCMNS_SALTI Regulator of cell morphogenesis and NO sig... 30 6.0
sp|A9N529|RCMNS_SALPB Regulator of cell morphogenesis and NO sig... 30 6.0
sp|Q5PJ71|RCMNS_SALPA Regulator of cell morphogenesis and NO sig... 30 6.0
sp|Q57GI1|RCMNS_SALCH Regulator of cell morphogenesis and NO sig... 30 6.0
sp|Q6MKR7|SYC_BDEBA Cysteinyl-tRNA synthetase OS=Bdellovibrio ba... 30 6.1

>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius
auratus GN=phr PE=2 SV=1
Length = 556

Score = 97.4 bits (241), Expect = 4e-20
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNV 420
G DPNGYVGCMWSICGIHDQGW ERP+FGKIRFMNY GCKRKF+V
Sbjct: 487 GCDPNGYVGCMWSICGIHDQGWAERPIFGKIRFMNYAGCKRKFDV 531


>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous
tridactylus GN=PHR PE=2 SV=1
Length = 532

Score = 93.2 bits (230), Expect = 8e-19
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNV 420
G DPNGYVGCMWSICGIHDQGW ER +FGKIR+MNY GCKRKF+V
Sbjct: 477 GWDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDV 521


>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase
OS=Methanobacterium thermoautotrophicum GN=phr PE=3 SV=2
Length = 445

Score = 67.8 bits (164), Expect = 3e-11
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNG+ G W G HD+ W ER +FGK+R+MN G KRKF +D Y+ ++ + E
Sbjct: 389 GRDPNGFAGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLKRKFRIDEYVDRIRGLMDE 445


>sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine
dehydrogenase OS=Buchnera aphidicola subsp. Baizongia
pistaciae GN=thrA PE=3 SV=1
Length = 816

Score = 31.6 bits (70), Expect = 2.7
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +3

Query: 93 PHSVRIHVPCNHDKHSVNFP**EMINQESKKQRMSGLHCSKTSL--SKYLTTLHPK-YTA 263
P S+ + CNH K+ N + + +H S SK + T+ PK ++
Sbjct: 289 PSSIGTKISCNHVKNK---------NLITGVTYLENVHMFSISCLYSKNIETIIPKIFSC 339

Query: 264 EFCRQVFIIIELSTP*EDILLCWC*GWRNLSWIFCGLLQFRNRTLHILDVAIHIELP--- 434
+++II+ + T ++ + FC L N LH+L A+++EL
Sbjct: 340 MSLSKIWIILTIQTSSQNTIS------------FCILKTMTNTALHVLHKALYLELKHKL 387

Query: 435 LTPVVVHK 458
L P+ V K
Sbjct: 388 LKPIKVEK 395


>sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus
cuniculus GN=SLC9A2 PE=2 SV=1
Length = 809

Score = 31.2 bits (69), Expect = 3.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +1

Query: 283 LLSSNCQL--LEKISFFAGVED------GGTLAGSFAAFFNSATARFTY 405
L S CQ+ +E I FAG+ + GG L G F F + T RFT+
Sbjct: 256 LFKSFCQMKTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTH 304


>sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapiens
GN=SLC9A2 PE=2 SV=1
Length = 812

Score = 31.2 bits (69), Expect = 3.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +1

Query: 283 LLSSNCQL--LEKISFFAGVED------GGTLAGSFAAFFNSATARFTY 405
L S CQ+ +E I FAG+ + GG L G F F + T RFT+
Sbjct: 256 LFKSFCQMKTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTH 304


>sp|Q8ZK76|RCMNS_SALTY Regulator of cell morphogenesis and NO
signaling OS=Salmonella typhimurium GN=ytfE PE=3 SV=1
Length = 220

Score = 30.4 bits (67), Expect = 6.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3

Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293
HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+
Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138

Query: 294 EL 299
+
Sbjct: 139 PM 140


>sp|Q8Z157|RCMNS_SALTI Regulator of cell morphogenesis and NO
signaling OS=Salmonella typhi GN=ytfE PE=3 SV=1
Length = 220

Score = 30.4 bits (67), Expect = 6.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3

Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293
HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+
Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138

Query: 294 EL 299
+
Sbjct: 139 PM 140


>sp|A9N529|RCMNS_SALPB Regulator of cell morphogenesis and NO
signaling OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=ytfE PE=3 SV=1
Length = 220

Score = 30.4 bits (67), Expect = 6.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3

Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293
HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+
Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138

Query: 294 EL 299
+
Sbjct: 139 PM 140


>sp|Q5PJ71|RCMNS_SALPA Regulator of cell morphogenesis and NO
signaling OS=Salmonella paratyphi A GN=ytfE PE=3 SV=1
Length = 220

Score = 30.4 bits (67), Expect = 6.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3

Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293
HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+
Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138

Query: 294 EL 299
+
Sbjct: 139 PM 140


tr_hit_id Q6WS77
Definition tr|Q6WS77|Q6WS77_9FILI Type II CPD DNA photolyase OS=Pityrogramma austroamericana
Align length 80
Score (bit) 144.0
E-value 3.0e-33
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921234|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C09.
(556 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6WS77|Q6WS77_9FILI Type II CPD DNA photolyase OS=Pityrogramm... 144 3e-33
tr|Q9AVI6|Q9AVI6_CUCSA CPD photolyase OS=Cucumis sativus GN=CsPH... 120 5e-26
tr|Q71BI8|Q71BI8_STELP Type II CPD photolyase OS=Stellaria longi... 119 1e-25
tr|Q84JX2|Q84JX2_SPIOL CPD photolyase OS=Spinacia oleracea PE=2 ... 117 3e-25
tr|A5BUB1|A5BUB1_VITVI Putative uncharacterized protein OS=Vitis... 117 3e-25
tr|A9SFA1|A9SFA1_PHYPA PHR1 AtPHR1-like type 2 CPD DNA photolyas... 117 5e-25
tr|A7QYT1|A7QYT1_VITVI Chromosome undetermined scaffold_254, who... 115 1e-24
tr|B4F9R2|B4F9R2_MAIZE Putative uncharacterized protein OS=Zea m... 115 2e-24
tr|B1B538|B1B538_SOYBN CPD photolyase OS=Glycine max GN=phr PE=2... 114 3e-24
tr|Q9SB00|Q9SB00_ARATH PHR1 OS=Arabidopsis thaliana GN=PHR1 PE=4... 114 5e-24
tr|Q9LNA9|Q9LNA9_ARATH F5O11.9 OS=Arabidopsis thaliana PE=4 SV=1 114 5e-24
tr|Q94CC5|Q94CC5_ARATH Putative uncharacterized protein At1g1237... 114 5e-24
tr|O24374|O24374_ARATH CPD photolyase (Type II CPD photolyase PH... 114 5e-24
tr|Q8LM09|Q8LM09_ORYSJ Putative CPD photolyase (Putative unchara... 112 1e-23
tr|Q84LN6|Q84LN6_ORYSJ CPD-photolyase OS=Oryza sativa subsp. jap... 112 1e-23
tr|Q6F6A2|Q6F6A2_ORYSJ CPD photolyase (Deoxyribodipyrimidine pho... 112 1e-23
tr|Q4LEM6|Q4LEM6_ORYSI CPD photolyase OS=Oryza sativa subsp. ind... 112 1e-23
tr|B8BFV4|B8BFV4_ORYSI Putative uncharacterized protein OS=Oryza... 112 1e-23
tr|A9ZMI0|A9ZMI0_ORYGL CPD photolyase OS=Oryza glaberrima PE=4 SV=1 112 1e-23
tr|A9ZMH8|A9ZMH8_9ORYZ CPD photolyase OS=Oryza barthii PE=4 SV=1 112 1e-23
tr|A9ZLY8|A9ZLY8_9ORYZ CPD photolyase OS=Oryza barthii PE=4 SV=1 112 1e-23
tr|A9ZLY6|A9ZLY6_ORYSA CPD photolyase OS=Oryza sativa PE=4 SV=1 112 1e-23
tr|A9ZLY4|A9ZLY4_ORYSA CPD photolyase OS=Oryza sativa PE=4 SV=1 112 1e-23
tr|A9ZLY2|A9ZLY2_ORYRU CPD photolyase OS=Oryza rufipogon PE=4 SV=1 112 1e-23
tr|A9ZLX8|A9ZLX8_ORYRU CPD photolyase OS=Oryza rufipogon PE=4 SV=1 112 1e-23
tr|A9ZLZ1|A9ZLZ1_9ORYZ CPD photolyase OS=Oryza meridionalis PE=4... 111 3e-23
tr|A9ZLY9|A9ZLY9_9ORYZ CPD photolyase OS=Oryza meridionalis PE=4... 111 3e-23
tr|A9ZLY3|A9ZLY3_9ORYZ CPD photolyase OS=Oryza meridionalis PE=4... 111 3e-23
tr|B6P7B5|B6P7B5_BRAFL Putative uncharacterized protein OS=Branc... 105 2e-21
tr|A9V1G3|A9V1G3_MONBE Predicted protein OS=Monosiga brevicollis... 101 2e-20

>tr|Q6WS77|Q6WS77_9FILI Type II CPD DNA photolyase OS=Pityrogramma
austroamericana PE=2 SV=1
Length = 546

Score = 144 bits (363), Expect = 3e-33
Identities = 67/80 (83%), Positives = 68/80 (85%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAELX 375
GRDPNGYVGCMWSICGIHDQGWQERPVFGKIR+MNYNGCKRKFNVDGYIQYVKR VAEL
Sbjct: 465 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRYMNYNGCKRKFNVDGYIQYVKRMVAELK 524

Query: 374 XXXXXXXXXXPSSTPAKKDI 315
PSSTPAKKDI
Sbjct: 525 RAAKDPAKIPPSSTPAKKDI 544


>tr|Q9AVI6|Q9AVI6_CUCSA CPD photolyase OS=Cucumis sativus GN=CsPHR
PE=2 SV=1
Length = 489

Score = 120 bits (301), Expect = 5e-26
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAEL 378
GRDPNGYVGCMWSICG+HDQGW+ERPVFGKIR+MNY GCKRKF+VDGYI YVKR V E+
Sbjct: 412 GRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFDVDGYIAYVKRLVGEI 470


>tr|Q71BI8|Q71BI8_STELP Type II CPD photolyase OS=Stellaria longipes
GN=pphr PE=2 SV=1
Length = 499

Score = 119 bits (297), Expect = 1e-25
Identities = 49/58 (84%), Positives = 54/58 (93%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNGYVGCMWSICGIHDQGW+ERPVFGKIR+MNY GCKRKF+VDGYI Y+K+ V E
Sbjct: 416 GRDPNGYVGCMWSICGIHDQGWKERPVFGKIRYMNYAGCKRKFDVDGYISYIKKLVGE 473


>tr|Q84JX2|Q84JX2_SPIOL CPD photolyase OS=Spinacia oleracea PE=2
SV=1
Length = 491

Score = 117 bits (294), Expect = 3e-25
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNGYVGCMWSICG+HDQGW+ERPVFGKIR+MNY GCKRKFNVDGYI YV++ V +
Sbjct: 414 GRDPNGYVGCMWSICGLHDQGWRERPVFGKIRYMNYAGCKRKFNVDGYIAYVRKLVVD 471


>tr|A5BUB1|A5BUB1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_026088 PE=4 SV=1
Length = 514

Score = 117 bits (294), Expect = 3e-25
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNGYVGCMWSICG+HDQGWQER +FGKIR+MNY GCKRKF+VDGYI YVKR V E
Sbjct: 438 GRDPNGYVGCMWSICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAYVKRLVTE 495


>tr|A9SFA1|A9SFA1_PHYPA PHR1 AtPHR1-like type 2 CPD DNA photolyase
OS=Physcomitrella patens subsp. patens GN=PHR1 PE=4 SV=1
Length = 495

Score = 117 bits (292), Expect = 5e-25
Identities = 49/58 (84%), Positives = 54/58 (93%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNGYVGCMWSICGIHDQGW+ERPVFGKIR+MN+NGCKRKFNVDGYI V + VA+
Sbjct: 413 GRDPNGYVGCMWSICGIHDQGWKERPVFGKIRYMNFNGCKRKFNVDGYIMNVNQMVAK 470


>tr|A7QYT1|A7QYT1_VITVI Chromosome undetermined scaffold_254, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010315001 PE=4 SV=1
Length = 496

Score = 115 bits (289), Expect = 1e-24
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381
GRDPNGYVGCMWSICG+HDQGWQER +FGKIR+MNY GCKRKF+VDGYI +VKR V E
Sbjct: 420 GRDPNGYVGCMWSICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAHVKRLVTE 477


>tr|B4F9R2|B4F9R2_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 493

Score = 115 bits (288), Expect = 2e-24
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAV 387
GRDPNGYVGCMWSICG+HDQGW+ERPVFGKIR+MNY GCKRKF+VD YI YVKR V
Sbjct: 418 GRDPNGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLV 473


>tr|B1B538|B1B538_SOYBN CPD photolyase OS=Glycine max GN=phr PE=2
SV=1
Length = 500

Score = 114 bits (285), Expect = 3e-24
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAEL 378
GRDPNGYVGCMWSICG+HDQGW+ERP+FGKIR+MNY GCKRKF+VD YI YV + V EL
Sbjct: 419 GRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVREL 477


>tr|Q9SB00|Q9SB00_ARATH PHR1 OS=Arabidopsis thaliana GN=PHR1 PE=4
SV=1
Length = 496

Score = 114 bits (284), Expect = 5e-24
Identities = 47/57 (82%), Positives = 52/57 (91%)
Frame = -3

Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVA 384
GRDP+GYVGCMWSICG+HDQGW+ERPVFGKIR+MNY GCKRKFNVD YI YVK V+
Sbjct: 416 GRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVS 472