BP921220
Clone id YMU001_000147_B06
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCAAAAATGATGAATGAAAGATTTCCTTGGAAAGAATAGGGTATTGAGATTATGTACATA
ATCAACGGGTATCCTTCGCTTGGCAAACTCCAGGAAAAGCAAAGTGCCTTACATTTAATT
GTCGCTTGCTATATTTATACTCGTCTCCTTCCTGGTACCAAAATTGTCCTGCCGTGAATT
CTCAGCTCCAAAATCTAACCGCCGAAATTAAAGCTAGACTTATCAGTAGGACAATAAATG
AAACCCATAGCCATGTGGGAGGACGTTGCCAAACATTTTTCCTAGAAACAGGATTCAGAA
TTTGTCTTTGGGATCTTGGCTGTTTCCCCAGAAATCCTTTCCCATTCCTGCCGGAAGGAG
ACTCTTTAGCAGAAGTTTTGGTCAGTTCTTCTGCACCAAGCTCTTTCTCTCTGTCCTCTA
CTGTCTCTGCAGTGTTTATGTCTTCAACGCCAACAGCCGCCTTTTTCTTGCCTTTTTGGC
TCTCTCCTTCTCTCTGCGTTCCGCCTCTTTCTGTGCCCTGAGCTGAGCCTTCGCTTGTGC
TCGCTCAGGC
■■Homology search results ■■ -
sp_hit_id A7MZI5
Definition sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Align length 59
Score (bit) 31.2
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921220|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_B06.
(535 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio... 31 3.3
sp|A0AK37|HIS8_LISW6 Histidinol-phosphate aminotransferase OS=Li... 31 4.3
sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane recep... 30 5.6
sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane recep... 30 5.6
sp|Q2RL44|HIS8_MOOTA Histidinol-phosphate aminotransferase OS=Mo... 30 7.4
sp|Q9KCA8|HIS8_BACHD Histidinol-phosphate aminotransferase OS=Ba... 30 9.7

>sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=infB PE=3 SV=1
Length = 894

Score = 31.2 bits (69), Expect = 3.3
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1

Query: 415 AETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNPVSRKNVWQRPPT 239
AE DR++E GA K AKE S R G+ G + R++ ++ P S ++ + + T
Sbjct: 251 AEDAADRKEEGGARRKKKKPAKEEQS-RGGRNQRGGKGRNKGKLAKPTSMQHGFDKSAT 308


>sp|A0AK37|HIS8_LISW6 Histidinol-phosphate aminotransferase
OS=Listeria welshimeri serovar 6b (strain ATCC 35897 /
DSM 20650 / SLCC5334) GN=hisC PE=3 SV=1
Length = 360

Score = 30.8 bits (68), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGK 323
KK+ G+ + E+ ELG E+TK S+ E+P G + K
Sbjct: 4 KKSLTGLSSYKPGKREEEVMAELGLTEITKLSSNENPLGTSPK 46


>sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane receptor
ROR1 OS=Mus musculus GN=Ror1 PE=2 SV=1
Length = 937

Score = 30.4 bits (67), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3

Query: 425 HKHCRDSRGQRERAWCRRTDQNF 357
H +CR+ Q+E WC D+NF
Sbjct: 359 HSYCRNPGNQKEAPWCFTLDENF 381


>sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane receptor
ROR1 OS=Homo sapiens GN=ROR1 PE=2 SV=2
Length = 937

Score = 30.4 bits (67), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3

Query: 425 HKHCRDSRGQRERAWCRRTDQNF 357
H +CR+ Q+E WC D+NF
Sbjct: 359 HSYCRNPGNQKEAPWCFTLDENF 381


>sp|Q2RL44|HIS8_MOOTA Histidinol-phosphate aminotransferase
OS=Moorella thermoacetica (strain ATCC 39073) GN=hisC
PE=3 SV=1
Length = 386

Score = 30.0 bits (66), Expect = 7.4
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNP 275
++A + ++ + +E+ ++ELG +++ K ++ E+P G + Q S R L P
Sbjct: 29 REAILSIKPYVPGKPIEEVQRELGVKDVIKLASNENPLGPSPDAVQALQEASDRIFLYP 87


>sp|Q9KCA8|HIS8_BACHD Histidinol-phosphate aminotransferase
OS=Bacillus halodurans GN=hisC PE=3 SV=1
Length = 369

Score = 29.6 bits (65), Expect = 9.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGK 323
K +G+ + +ED ++ELG E + K ++ E+P G + K
Sbjct: 4 KPQIIGLPPYKPGKPMEDVKRELGLETVVKLASNENPFGASPK 46


tr_hit_id A8P123
Definition tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein OS=Brugia malayi
Align length 70
Score (bit) 34.3
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921220|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_B06.
(535 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein OS=... 34 4.2
tr|Q6C9S5|Q6C9S5_YARLI YALI0D08734p OS=Yarrowia lipolytica GN=YA... 34 4.2
tr|Q2R150|Q2R150_ORYSJ Putative uncharacterized protein OS=Oryza... 34 5.5
tr|A2ZGC9|A2ZGC9_ORYSI Putative uncharacterized protein OS=Oryza... 34 5.5

>tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein
OS=Brugia malayi GN=Bm1_13870 PE=4 SV=1
Length = 661

Score = 34.3 bits (77), Expect = 4.2
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -1

Query: 442 AVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNPVSRK 263
AV D+ A +ED + EL A++L+ S+ G+ LG Q ++P K
Sbjct: 413 AVVCGDVEKAPLLEDSKYELNAQDLSNESSSRLQVRSKGRPRLGHGKAGQLGKVSPSISK 472

Query: 262 NVWQRPPTWL 233
PP WL
Sbjct: 473 KKKHGPPVWL 482


>tr|Q6C9S5|Q6C9S5_YARLI YALI0D08734p OS=Yarrowia lipolytica
GN=YALI0D08734g PE=4 SV=1
Length = 341

Score = 34.3 bits (77), Expect = 4.2
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -1

Query: 439 VGVEDINTAETVEDREKELGAEELTKTSAKESPS-----GRNGKGFLGKQPRSQRQILNP 275
+G++ E ++RE+E GA + A+ SPS G +G K RS R P
Sbjct: 149 IGIKVAKKKEVAKEREREKGASGSGEREARASPSVGGRPGATARGTPSKPSRSDRP--TP 206

Query: 274 VSRKNVWQRPPT 239
R +RPP+
Sbjct: 207 SDRPTAGKRPPS 218


>tr|Q2R150|Q2R150_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=LOC_Os11g40350 PE=4 SV=1
Length = 104

Score = 33.9 bits (76), Expect = 5.5
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -1

Query: 409 TVEDREKELGAEELTKTSAKESPSGRNG------KGFLGKQPRSQRQILNPVSRKNV 257
T ED + G E + ++ SGR+G KG+ G++PR RQ L P+ R+NV
Sbjct: 19 TAEDGQDGGGGGERGEGDGEDGKSGRHGTRGGSGKGWRGEKPRQSRQ-LRPLPRRNV 74


>tr|A2ZGC9|A2ZGC9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36831 PE=4 SV=1
Length = 104

Score = 33.9 bits (76), Expect = 5.5
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -1

Query: 409 TVEDREKELGAEELTKTSAKESPSGR------NGKGFLGKQPRSQRQILNPVSRKNV 257
T EDR+ G E + ++ SGR +G+G G++PR RQ L P+ R+NV
Sbjct: 19 TAEDRQDGGGGGERGEGDGEDGKSGRRGTRGGSGRGRRGEKPRQSRQ-LRPLPRRNV 74