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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921208
Clone id YMU001_000147_A03
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGACAGCAATGATGGCTTCCACTATAAAAATATCAACCATGTACAAAATACTCCATGCCA
AAACAATCCTCGGCAACATACATTATCTATGAAATCCAATCGGCAAAAAAGTCTCAAAAA
TGGCTAAAATAGGTGTTTTTTAGAGCTCCAACGGCTAGTTTTAGCAAGTCAATGAGCACT
GGACGAGTGTCCGAGTGAACTGAAAAATTTTACATGCAAAATACCTCTTAACTAGACTTG
CCAACTCCTCTTTTCTGCATGTGAGGGGACCTTGGGCCGGCCTTAGAATTTTCCAAAGCG
GGCAAACCGTCACAGACTTGACCCCCGAAAAAACTTCAGAGAGTGATATCTTGGCATCCA
TGGCTCTGATTGATGATATCGAAGGACCAACAGGATCAATAATTTGAGCTTTGCACATCC
ATAACTCCAAACTGGC
■■Homology search results ■■ -
sp_hit_id Q6LHL2
Definition sp|Q6LHL2|MODC_PHOPR Molybdenum import ATP-binding protein modC OS=Photobacterium profundum
Align length 73
Score (bit) 34.3
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921208|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A03.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6LHL2|MODC_PHOPR Molybdenum import ATP-binding protein modC ...    34   0.23 
sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus muscu...    30   3.4  
sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapi...    30   3.4  

>sp|Q6LHL2|MODC_PHOPR Molybdenum import ATP-binding protein modC
           OS=Photobacterium profundum GN=modC PE=3 SV=1
          Length = 358

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
 Frame = +3

Query: 186 SVRVN*KILHAKYLLTR--LANSSFLHV------RGPWAGLRIFQSGQTVTDLTPEKTSE 341
           + RVN  + H KY LT+  L+++++L V      RG W  +RI  +  ++T + PE+TS 
Sbjct: 235 TARVN--LNHPKYALTQVMLSHNAYLWVSRVNQERGEWIRVRIHSNDVSLTRVKPEQTSI 292

Query: 342 SDILASMALIDDI 380
            ++L  +A ID I
Sbjct: 293 RNVL--LARIDKI 303


>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus
            GN=Dnah2 PE=2 SV=1
          Length = 4456

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 346  SLSEVFSGVKSVTVCPLWKILRPAQGPLTCRKEELASLVKRY 221
            SL E+F+ +    V PLW  + P+Q PL     +LA  V+++
Sbjct: 4252 SLEEIFNCIFDAHVPPLWGKVYPSQKPLASWTRDLAVRVEQF 4293


>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens
            GN=DNAH2 PE=1 SV=3
          Length = 4427

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 346  SLSEVFSGVKSVTVCPLWKILRPAQGPLTCRKEELASLVKRY 221
            SL E+F+ +    V PLW    P+Q PL     +LA  V+++
Sbjct: 4223 SLEEIFNCIFDAHVPPLWGKAYPSQKPLAAWTRDLAMRVEQF 4264
tr_hit_id Q1ZW05
Definition tr|Q1ZW05|Q1ZW05_9VIBR Hypothetical molybdenum ABC transporter, ATP-binding protein OS=Vibrio angustum S14
Align length 73
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921208|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A03.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1ZW05|Q1ZW05_9VIBR Hypothetical molybdenum ABC transporter, ...    35   1.9  
tr|Q2BX82|Q2BX82_9GAMM Hypothetical molybdenum ABC transporter, ...    35   2.4  
tr|Q1Z6Q1|Q1Z6Q1_PHOPR Hypothetical molybdenum ABC transporter, ...    34   3.2  

>tr|Q1ZW05|Q1ZW05_9VIBR Hypothetical molybdenum ABC transporter,
           ATP-binding protein OS=Vibrio angustum S14
           GN=VAS14_11349 PE=3 SV=1
          Length = 363

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
 Frame = +3

Query: 186 SVRVN*KILHAKYLLTR--LANSSFLHV------RGPWAGLRIFQSGQTVTDLTPEKTSE 341
           S R+N    H KY LT+  L++ SFL V      RG W  +RIF +  ++    P +TS 
Sbjct: 241 SARINYN--HPKYALTQVMLSHDSFLWVSRLHQQRGEWVRVRIFSNDVSIAREQPTQTSI 298

Query: 342 SDILASMALIDDI 380
            +ILA  A ID I
Sbjct: 299 RNILA--ARIDKI 309


>tr|Q2BX82|Q2BX82_9GAMM Hypothetical molybdenum ABC transporter,
           ATP-binding protein OS=Photobacterium sp. SKA34
           GN=SKA34_10870 PE=3 SV=1
          Length = 363

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
 Frame = +3

Query: 186 SVRVN*KILHAKYLLTR--LANSSFLHV------RGPWAGLRIFQSGQTVTDLTPEKTSE 341
           S R+N    H KY LT+  L++ SFL V      RG W  +RIF +  ++    P +TS 
Sbjct: 241 SARINYN--HPKYALTQVMLSHDSFLWVSRLHQQRGEWVRVRIFSNDVSIAREQPTQTSI 298

Query: 342 SDILAS 359
            +ILA+
Sbjct: 299 RNILAA 304


>tr|Q1Z6Q1|Q1Z6Q1_PHOPR Hypothetical molybdenum ABC transporter,
           ATP-binding protein OS=Photobacterium profundum 3TCK
           GN=P3TCK_10453 PE=3 SV=1
          Length = 343

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
 Frame = +3

Query: 186 SVRVN*KILHAKYLLTR--LANSSFLHV------RGPWAGLRIFQSGQTVTDLTPEKTSE 341
           + RVN  + H KY LT+  L+++++L V      RG W  +RI  +  ++T + PE+TS 
Sbjct: 220 TARVN--LNHPKYALTQVMLSHNAYLWVSRLNQERGEWIRVRIHSNDVSLTRVKPEQTSI 277

Query: 342 SDILASMALIDDI 380
            ++L  +A ID I
Sbjct: 278 RNVL--LARIDKI 288