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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921167
Clone id YMU001_000146_E05
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATGAACAGGAAGTATGTGTTTGGGGTGCTCGCACCCGGGAAAACTAGACGAGACATG
TCTTCACCATTAGGATTAATACCATGACAATTGAATGCCAAAAAGAAAAACAATTCTGCT
GCCTCGATCATCCCTATGAAAAAAAGGCGAACAAAAATTGATATTCCATGCAAATGTACA
AGAACACATAAGTGCAATCTCGCTCCCTCCCTCAAGAGAATGTTAAGGTGGCGTACCTTT
GATCGATTTCCCAGCGCTTTAGCTATTTCCGTTTGTACCCGCATGTAGATGTCCATCCGT
TTTGTGTCCTCCTCTTGTCTTATCTTGGACAATCTCTCCTCATGCTCGCGTATCTCCTTT
GCCATCCTCTCTTCATGATCGTGTCTTGA
■■Homology search results ■■ -
sp_hit_id P0C656
Definition sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription subunit 12 OS=Caenorhabditis briggsae
Align length 62
Score (bit) 35.4
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921167|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E05.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcriptio...    35   0.090
sp|Q7S8V3|NST1_NEUCR Stress response protein nst-1 OS=Neurospora...    32   1.3  
sp|A5DIV5|BECN1_PICGU Autophagy-related protein 6 OS=Pichia guil...    32   1.3  
sp|Q45GW3|IQUB_RAT IQ and ubiquitin-like domain-containing prote...    30   2.9  
sp|P12950|DHN1_MAIZE Dehydrin DHN1 OS=Zea mays GN=DHN1 PE=1 SV=2       30   3.8  
sp|Q07283|TRHY_HUMAN Trichohyalin OS=Homo sapiens GN=TCHH PE=1 SV=2    30   4.9  
sp|A0JYG5|SECA_ARTS2 Protein translocase subunit secA OS=Arthrob...    30   4.9  
sp|P48515|IF2_THET8 Translation initiation factor IF-2 OS=Thermu...    30   4.9  
sp|Q72KE8|IF2_THET2 Translation initiation factor IF-2 OS=Thermu...    30   4.9  
sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial OS=Bos tau...    29   6.4  
sp|Q8SW86|Y2F4_ENCCU UPF0329 protein ECU02_1540 OS=Encephalitozo...    29   8.4  
sp|Q9XZ71|TNNT_PERAM Troponin T OS=Periplaneta americana GN=TNT ...    29   8.4  
sp|P25407|STI1L_PLAFA STI1-like protein (Fragment) OS=Plasmodium...    29   8.4  
sp|A1R844|SECA_ARTAT Protein translocase subunit secA OS=Arthrob...    29   8.4  
sp|A5DXA0|NST1_LODEL Stress response protein NST1 OS=Lodderomyce...    29   8.4  
sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=...    29   8.4  
sp|Q9W3K5|GSH1_DROME Glutamate--cysteine ligase OS=Drosophila me...    29   8.4  

>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription
            subunit 12 OS=Caenorhabditis briggsae GN=dpy-22 PE=3 SV=1
          Length = 3941

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -1

Query: 389  SRHDHEERMAKEIREHEERLSKIRQEEDTKRMDI-YMRVQTEIAKALGNRSKVRHLNILL 213
            +++   E   +E REH+ERL KIR+E+  K   I   ++Q E  +A+   +++     +L
Sbjct: 2864 NQNRQREAREREAREHQERLHKIREEQMQKEAKIREEQMQLERQRAIEENNRIMEEQRIL 2923

Query: 212  RE 207
            RE
Sbjct: 2924 RE 2925


>sp|Q7S8V3|NST1_NEUCR Stress response protein nst-1 OS=Neurospora
           crassa GN=nst-1 PE=3 SV=1
          Length = 1350

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 380 DHEERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSK 237
           + +ER AKE +E +ER    RQE + +  +   + + E AKA  ++SK
Sbjct: 685 EQKEREAKEQKERQERQE--RQEREKREREAKAKAEMEAAKAAKDKSK 730


>sp|A5DIV5|BECN1_PICGU Autophagy-related protein 6 OS=Pichia
           guilliermondii GN=ATG6 PE=2 SV=2
          Length = 461

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
 Frame = -1

Query: 374 EERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSKV-----RHLNILLR 210
           E+   +E+R  E+   ++ +E    +M++ ++  TE++ AL  ++++     R  + L +
Sbjct: 210 EQEKLQELRSLEQNREELSKELQDVKMELALQQSTELSNALRLKNELHWTLQRKADQLAQ 269

Query: 209 EGARLHLCV--LVHLHGISIFVRLFFI 135
           E AR  + +  L HL  ++++ + F I
Sbjct: 270 EKARYRVVLNRLDHLRNLNMYTKFFDI 296


>sp|Q45GW3|IQUB_RAT IQ and ubiquitin-like domain-containing protein
           OS=Rattus norvegicus GN=Iqub PE=2 SV=2
          Length = 790

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 368 RMAKEIR---EHEERLSKIRQEEDTKRMDIYMR 279
           R+ K++R   E EE L KIR++E+  RMD Y R
Sbjct: 360 RLQKKMRLEWEKEEELKKIREKEEWIRMDYYRR 392


>sp|P12950|DHN1_MAIZE Dehydrin DHN1 OS=Zea mays GN=DHN1 PE=1 SV=2
          Length = 168

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 369 EDGKGDTRA*G--EIVQDKTRGGHKTDGHLHAGTNG 268
           +DG G  R  G  E +++K  GGHK D H  A T G
Sbjct: 86  DDGMGGRRKKGIKEKIKEKLPGGHKDDQHATATTGG 121


>sp|Q07283|TRHY_HUMAN Trichohyalin OS=Homo sapiens GN=TCHH PE=1 SV=2
          Length = 1943

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 386 RHDHEERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQ 273
           +H+ E R  +  RE EER   +++EE+T+R +   R Q
Sbjct: 437 KHEQERREQRLKREQEERRDWLKREEETERHEQERRKQ 474


>sp|A0JYG5|SECA_ARTS2 Protein translocase subunit secA
           OS=Arthrobacter sp. (strain FB24) GN=secA PE=3 SV=1
          Length = 912

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 356 EIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSKVRHLNILLREGARLHL 189
           E+RE  +RL + R ++  K  D+       + +A      +RH ++ L  GA LHL
Sbjct: 41  ELREETDRLRE-RHQDGEKLDDLLPEAFAAVREASSRTLGMRHFDVQLMGGAALHL 95


>sp|P48515|IF2_THET8 Translation initiation factor IF-2 OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=infB
           PE=1 SV=2
          Length = 571

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -1

Query: 362 AKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSKVRHLNILLREGARLHLCV 183
           AKEI E  +   K R+EE+  R     R   E+ +A+    + + LN++LR   +  L  
Sbjct: 332 AKEIAEERKEERKAREEEEKARRP---RTMAELLRAMQEEGR-KELNLILRADTQGSLEA 387

Query: 182 LVHL 171
           + H+
Sbjct: 388 IQHI 391


>sp|Q72KE8|IF2_THET2 Translation initiation factor IF-2 OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=infB PE=3 SV=1
          Length = 571

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -1

Query: 362 AKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSKVRHLNILLREGARLHLCV 183
           AKEI E  +   K R+EE+  R     R   E+ +A+    + + LN++LR   +  L  
Sbjct: 332 AKEIAEERKEERKAREEEEKARRP---RTMAELLRAMQEEGR-KELNLILRADTQGSLEA 387

Query: 182 LVHL 171
           + H+
Sbjct: 388 IQHI 391


>sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial OS=Bos taurus
           GN=ATPIF1 PE=1 SV=2
          Length = 109

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 389 SRHDHE-ERMAKEIREHEERLSKIRQEED 306
           S H  E ER+ KEI  H++ + K++Q ED
Sbjct: 79  SHHAKEIERLQKEIERHKQSIKKLKQSED 107
tr_hit_id Q65439
Definition tr|Q65439|Q65439_9GEMI ORF L2 OS=Beet severe curly top virus - Cfh
Align length 49
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921167|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E05.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q65439|Q65439_9GEMI ORF L2 OS=Beet severe curly top virus - C...    36   1.1  
tr|O72691|O72691_9GEMI C2 protein OS=Beet severe curly top virus...    36   1.1  
tr|B5LY52|B5LY52_9GEMI C2 protein OS=Pepper yellow dwarf virus -...    36   1.1  
tr|A5HDX6|A5HDX6_9GEMI Silencing suppressor OS=Pepper curly top ...    36   1.1  
tr|Q82FP7|Q82FP7_STRAW Putative two-component system sensor kina...    35   1.4  
tr|A5N8B9|A5N8B9_CLOK5 Predicted NRPS methlyase and thiolation d...    34   4.2  
tr|Q0FRL2|Q0FRL2_9RHOB ATP-dependent Clp protease, ATP-binding s...    33   5.5  
tr|Q2F5V8|Q2F5V8_BOMMO Stathmin OS=Bombyx mori PE=2 SV=1               33   5.5  
tr|Q5KFQ4|Q5KFQ4_CRYNE Transcription/repair factor TFIIH subunit...    33   5.5  
tr|Q55QG3|Q55QG3_CRYNE Putative uncharacterized protein OS=Crypt...    33   5.5  
tr|Q8BA56|Q8BA56_9GEMI C2 OS=Beet mild curly top virus - [Worlan...    33   7.1  
tr|A4RZ89|A4RZ89_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   7.1  
tr|B4N4T5|B4N4T5_DROWI GK12678 OS=Drosophila willistoni GN=GK126...    33   7.1  
tr|B3S3D5|B3S3D5_TRIAD Putative uncharacterized protein OS=Trich...    33   7.1  
tr|A8QCR3|A8QCR3_BRUMA Moesin/ezrin/radixin homolog 1, putative ...    33   7.1  
tr|B8PNX3|B8PNX3_9APHY Predicted protein OS=Postia placenta Mad-...    33   7.1  
tr|B8P2L6|B8P2L6_9APHY Predicted protein OS=Postia placenta Mad-...    33   7.1  
tr|Q8IJE9|Q8IJE9_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.3  
tr|Q5AFV4|Q5AFV4_CANAL Putative uncharacterized protein RLF2 OS=...    33   9.3  
tr|Q5AF69|Q5AF69_CANAL Putative uncharacterized protein RLF2 OS=...    33   9.3  

>tr|Q65439|Q65439_9GEMI ORF L2 OS=Beet severe curly top virus - Cfh
           PE=4 SV=1
          Length = 173

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 109 NNSAASIIPMKKRRTKIDIPCKC--TRTHKCNLAPSLKRMLRWRTFDRF 249
           N+   S+I +KKR  KI +PCKC  T  H+CN   S +      T D F
Sbjct: 49  NSQVLSLITIKKRPRKIKLPCKCHFTIHHECNQGFSHRGTHHAATSDEF 97


>tr|O72691|O72691_9GEMI C2 protein OS=Beet severe curly top virus -
           Cfh [Beta] GN=orf C2 PE=4 SV=1
          Length = 173

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 109 NNSAASIIPMKKRRTKIDIPCKC--TRTHKCNLAPSLKRMLRWRTFDRF 249
           N+   S+I +KKR  KI +PCKC  T  H+CN   S +      T D F
Sbjct: 49  NSQVLSLITIKKRPRKIKLPCKCHFTIHHECNQGFSHRGTHHAATSDEF 97


>tr|B5LY52|B5LY52_9GEMI C2 protein OS=Pepper yellow dwarf virus -
           New Mexico GN=C2 PE=4 SV=1
          Length = 147

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 109 NNSAASIIPMKKRRTKIDIPCKC--TRTHKCNLAPSLKRMLRWRTFDRFPS 255
           N++  S+I ++KR  K+++PCKC  T  H+CN   S +      T D F S
Sbjct: 16  NSAVLSLIKIQKRPRKVNLPCKCHFTIHHECNQGFSHRGTYHASTGDEFCS 66


>tr|A5HDX6|A5HDX6_9GEMI Silencing suppressor OS=Pepper curly top
           virus GN=c2 PE=4 SV=1
          Length = 147

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +1

Query: 109 NNSAASIIPMKKRRTKIDIPCKC--TRTHKCN 198
           N+   S+I +KKR  KI++PCKC  T  H+CN
Sbjct: 16  NSQVLSLITIKKRPRKINLPCKCHFTIHHECN 47


>tr|Q82FP7|Q82FP7_STRAW Putative two-component system sensor
           kinase/response regulator, bifunctional protein
           OS=Streptomyces avermitilis GN=SAV4205 PE=4 SV=1
          Length = 1479

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = -1

Query: 389 SRHDHEERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIA------KALGNRSKVRH 228
           +   HE+ +A+   EH+E L ++R+E   +  ++    + E+A       ALG R K RH
Sbjct: 276 AEEQHEQELARIAEEHDEELKRLREEHTAELTELRELHEEELAAGDERYAALGEREKDRH 335


>tr|A5N8B9|A5N8B9_CLOK5 Predicted NRPS methlyase and thiolation
           domain OS=Clostridium kluyveri (strain ATCC 8527 / DSM
           555 / NCIMB 10680) GN=CKL_1508 PE=4 SV=1
          Length = 495

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 236 VRHLNILLREGARLHLCVLVHLHGISIFVRLFF 138
           +R+ NI+L++G RLHL        +SI V +FF
Sbjct: 267 IRYANIMLKKGGRLHLIDFTKTDAVSILVAIFF 299


>tr|Q0FRL2|Q0FRL2_9RHOB ATP-dependent Clp protease, ATP-binding
           subunit ClpB OS=Roseovarius sp. HTCC2601 GN=R2601_13509
           PE=3 SV=1
          Length = 871

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 380 DHEERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALGNRSKVRHL 225
           DHEER A+   + +    K+    D K     MR   EIAK  GN +K   L
Sbjct: 450 DHEERSAEMTAQWQAERDKLASARDVKEQLDRMRADLEIAKREGNFAKAGEL 501


>tr|Q2F5V8|Q2F5V8_BOMMO Stathmin OS=Bombyx mori PE=2 SV=1
          Length = 291

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = -1

Query: 386 RHDHEERMAKEIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKALG--------NRSKVR 231
           R ++ ++M + +REHEE++ K+R     K   +   +Q ++ +A           R K+R
Sbjct: 159 RDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLR 218

Query: 230 HLNILLRE 207
           + NI L E
Sbjct: 219 NHNIKLAE 226


>tr|Q5KFQ4|Q5KFQ4_CRYNE Transcription/repair factor TFIIH subunit
           Tfb3, putative OS=Cryptococcus neoformans GN=CNF00950
           PE=4 SV=1
          Length = 372

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 356 EIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKAL--GNRSKVRHLNILLREGARL 195
           E R  EER+  I + E  +RM+   R++TE+ +AL  G   + R + I  RE  RL
Sbjct: 214 ERRAREERMRMIEEAERVERME-DERIKTEVTQALAKGETKRAREIEIEAREAKRL 268


>tr|Q55QG3|Q55QG3_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBF3740 PE=4 SV=1
          Length = 372

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 356 EIREHEERLSKIRQEEDTKRMDIYMRVQTEIAKAL--GNRSKVRHLNILLREGARL 195
           E R  EER+  I + E  +RM+   R++TE+ +AL  G   + R + I  RE  RL
Sbjct: 214 ERRAREERMRMIEEAERVERME-DERIKTEVTQALAKGETKRAREIEIEAREAKRL 268