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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921120
Clone id YMU001_000146_A02
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATACCCATCGAATCATTGCTGATGCCTTCACCTCATTGACAATGATGCAACCAGCCTTC
AGATCATTGCGGAGAAAAGCATACATGCTCTCCAAGAAGATGGATGAGTTGCTGTTGGCC
ACTACAGCATCTATACAACTGTTTCGGCATTCAAAATCAACATGTAAGGTTCAGGTTTGG
GCCTTGGGAAAAGCATGTTAATCTTCTGCTTGACAATTTCATCCCTAGTGGGTAAATCAT
TCTCGAGGAACTTCTCTACAATTGGTTTAGTGAACCACTGTGCCACATAATTTCCACGAC
ACTGCAAAGCCCCCCCATGGTTTTCAAATGGTGAATCCAGGGGCCTTAACAAGTCCATAA
TAGGATCATTCAGAGTTCCTCCAGTTACAATCTTTATTCTCCTAGGCAATGAGTGATAAT
GGATCAT
■■Homology search results ■■ -
sp_hit_id Q9SAK0
Definition sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana
Align length 86
Score (bit) 84.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921120|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_A02.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protei...    84   2e-16
sp|A5UY13|ILVD_ROSS1 Dihydroxy-acid dehydratase OS=Roseiflexus s...    32   1.1  
sp|A7NNA3|ILVD_ROSCS Dihydroxy-acid dehydratase OS=Roseiflexus c...    32   1.1  
sp|A0Q0E8|ILVD_CLONN Dihydroxy-acid dehydratase OS=Clostridium n...    31   2.4  
sp|Q54UL8|MPS1_DICDI Probable serine/threonine-protein kinase mp...    30   3.1  
sp|Q181C1|KSGA_CLOD6 Dimethyladenosine transferase OS=Clostridiu...    30   4.1  
sp|Q9T0C7|FB231_ARATH Putative F-box protein At4g11590 OS=Arabid...    30   4.1  
sp|A8YVR1|Y1346_LACH4 UPF0090 protein lhv_1346 OS=Lactobacillus ...    30   5.3  
sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protei...    30   5.3  
sp|O27498|ILVD_METTH Dihydroxy-acid dehydratase OS=Methanobacter...    30   5.3  
sp|Q74IS4|Y1491_LACJO UPF0090 protein LJ_1491 OS=Lactobacillus j...    29   7.0  
sp|Q5FJN2|Y1260_LACAC UPF0090 protein LBA1260 OS=Lactobacillus a...    29   7.0  
sp|Q8UEN6|SYV_AGRT5 Valyl-tRNA synthetase OS=Agrobacterium tumef...    29   7.0  
sp|A8E0R9|GRIP2_XENLA Glutamate receptor-interacting protein 2 O...    29   8.8  
sp|A4XHR9|ILVD_CALS8 Dihydroxy-acid dehydratase OS=Caldicellulos...    29   9.1  
sp|Q07009|CAN2_RAT Calpain-2 catalytic subunit OS=Rattus norvegi...    29   9.1  
sp|Q27971|CAN2_BOVIN Calpain-2 catalytic subunit OS=Bos taurus G...    29   9.1  

>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial OS=Arabidopsis thaliana
           GN=EMB2217 PE=2 SV=1
          Length = 836

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 39/86 (45%), Positives = 58/86 (67%)
 Frame = -1

Query: 427 MIHYHSLPRRIKIVTGGTLNDPIMDLLRPLDSPFENHGGALQCRGNYVAQWFTKPIVEKF 248
           M++Y  +PRRIK+VTG TL   I  +L  ++SPFE     L+  G  V +WF KPIV++F
Sbjct: 735 MLYYGVVPRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAPGELVMEWFKKPIVQQF 794

Query: 247 LENDLPTRDEIVKQKINMLFPRPKPE 170
           L N++P+R +I+  K+N++FP   PE
Sbjct: 795 LLNEIPSRSDILMHKMNVMFPSSAPE 820


>sp|A5UY13|ILVD_ROSS1 Dihydroxy-acid dehydratase OS=Roseiflexus sp.
           (strain RS-1) GN=ilvD PE=3 SV=1
          Length = 559

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
 Frame = -1

Query: 388 VTGGTLND--------PIMDLLRPLDSPFENHGGALQCRGN 290
           VTG TL +        P  D++RPLD+P +  GG L  RGN
Sbjct: 346 VTGRTLAEEAADAVETPGQDVIRPLDNPIKPTGGLLVLRGN 386


>sp|A7NNA3|ILVD_ROSCS Dihydroxy-acid dehydratase OS=Roseiflexus
           castenholzii (strain DSM 13941 / HLO8) GN=ilvD PE=3 SV=1
          Length = 559

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
 Frame = -1

Query: 388 VTGGTLND--------PIMDLLRPLDSPFENHGGALQCRGN 290
           VTG TL +        P  D++RPLD+P +  GG L  RGN
Sbjct: 346 VTGRTLAEEAADAVETPGQDVIRPLDNPIKPTGGLLVLRGN 386


>sp|A0Q0E8|ILVD_CLONN Dihydroxy-acid dehydratase OS=Clostridium
           novyi (strain NT) GN=ilvD PE=3 SV=1
          Length = 554

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -1

Query: 388 VTGGTLNDPIMD-------LLRPLDSPFENHGGALQCRGN 290
           VTG TL + I +       ++RPL++P+ N GG    RGN
Sbjct: 341 VTGKTLEENIKNSLVLNDSVIRPLNNPYSNEGGIAILRGN 380


>sp|Q54UL8|MPS1_DICDI Probable serine/threonine-protein kinase mps1
           OS=Dictyostelium discoideum GN=mps1 PE=3 SV=1
          Length = 983

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 322 NHGGALQCRGNYVAQWFTKPIVEKFLENDLPTRDE----IVKQKINMLFPRPKPEPYML 158
           NHGG    R     Q F+KP +    +   P   +    I +Q I M  P+P+P+P M+
Sbjct: 19  NHGGINMNR----FQRFSKPTISPIQQQQQPQPQQPSSIIQRQSIIMTQPQPQPQPQMI 73


>sp|Q181C1|KSGA_CLOD6 Dimethyladenosine transferase OS=Clostridium
           difficile (strain 630) GN=ksgA PE=3 SV=1
          Length = 289

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 319 HGGALQCRGNYVAQWFTKPIVEKFLENDLPTRDEIV 212
           +GG ++   N +  + T PIV KFLE D+P  D +V
Sbjct: 116 NGGPVKLVAN-LPYYITTPIVMKFLEEDIPVTDIVV 150


>sp|Q9T0C7|FB231_ARATH Putative F-box protein At4g11590
           OS=Arabidopsis thaliana GN=At4g11590 PE=2 SV=1
          Length = 397

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 309 LCSVVEIMWHSGSLNQL*RSSSRMIYPLGMKLSSRRLTCFS--QGPNLNLTC 160
           LC   ++  H G    L  SS   ++PLG+K    R+  ++   GP LN  C
Sbjct: 179 LCMKEKMQRHDGRTRILQLSSQHQVFPLGVKKKPWRMIDYTTPHGPVLNSVC 230


>sp|A8YVR1|Y1346_LACH4 UPF0090 protein lhv_1346 OS=Lactobacillus
           helveticus (strain DPC 4571) GN=lhv_1346 PE=3 SV=1
          Length = 158

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = -1

Query: 361 IMDLLRPLDSPFENHGGALQCRGNYV---AQWFTKPIVEKFLE----NDLPTRDEIVKQK 203
           ++DL+RP+     +  G +     YV    Q + +  V++       +++    E+V +K
Sbjct: 4   VVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSEK 63

Query: 202 INMLFPRPKPEPYMLILNA 146
           ++ + P P P+PY+L L++
Sbjct: 64  LDTIDPDPLPDPYVLELSS 82


>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein
            At2g31400, chloroplastic OS=Arabidopsis thaliana
            GN=At2g31400 PE=2 SV=1
          Length = 918

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
 Frame = -1

Query: 415  HSLPRRIKIVTG----------GTLNDPIMDLLRPLDSPF---ENHGGALQCRGNYVAQW 275
            H LP+ + I+TG          G L   +  LLR +D+PF   + + G     G+ VA W
Sbjct: 813  HELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATW 872

Query: 274  FTKPIVEKFL 245
              +    K L
Sbjct: 873  LRESATLKLL 882


>sp|O27498|ILVD_METTH Dihydroxy-acid dehydratase OS=Methanobacterium
           thermoautotrophicum GN=ilvD PE=3 SV=2
          Length = 549

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 355 DLLRPLDSPFENHGGALQCRGN 290
           D++RPLDSP  + GG    RGN
Sbjct: 357 DVIRPLDSPVHSEGGLAILRGN 378
tr_hit_id A7PJW2
Definition tr|A7PJW2|A7PJW2_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera
Align length 86
Score (bit) 83.6
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921120|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_A02.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PJW2|A7PJW2_VITVI Chromosome chr12 scaffold_18, whole genom...    84   5e-15
tr|Q7XLD5|Q7XLD5_ORYSJ Os04g0612800 protein OS=Oryza sativa subs...    81   2e-14
tr|A3AXC0|A3AXC0_ORYSJ Putative uncharacterized protein OS=Oryza...    81   2e-14
tr|A2XXF8|A2XXF8_ORYSI Putative uncharacterized protein OS=Oryza...    81   2e-14
tr|Q1ILI9|Q1ILI9_ACIBL Glycosyl transferase, group 1 OS=Acidobac...    33   5.5  
tr|B0CR42|B0CR42_LACBS Predicted protein OS=Laccaria bicolor (st...    33   5.5  
tr|A1TCC4|A1TCC4_MYCVP Phospholipid/glycerol acyltransferase OS=...    33   9.4  
tr|B1B9I0|B1B9I0_CLOBO Dihydroxy-acid dehydratase OS=Clostridium...    33   9.4  

>tr|A7PJW2|A7PJW2_VITVI Chromosome chr12 scaffold_18, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00018904001
            PE=4 SV=1
          Length = 1100

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%)
 Frame = -1

Query: 427  MIHYHSLPRRIKIVTGGTLNDPIMDLLRPLDSPFENHGGALQCRGNYVAQWFTKPIVEKF 248
            M++Y  +PRRIK+VTG TL   +  +L  ++SPFE     L+  G+ V +WF KPIV++F
Sbjct: 750  MLYYGVVPRRIKLVTGPTLKIVVAQMLNSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQF 809

Query: 247  LENDLPTRDEIVKQKINMLFPRPKPE 170
            L N++P+R +I+  K+N LFP   PE
Sbjct: 810  LINEIPSRADILMHKLNTLFPSSAPE 835


>tr|Q7XLD5|Q7XLD5_ORYSJ Os04g0612800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0070C17.14 PE=4 SV=2
          Length = 784

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 36/86 (41%), Positives = 59/86 (68%)
 Frame = -1

Query: 427 MIHYHSLPRRIKIVTGGTLNDPIMDLLRPLDSPFENHGGALQCRGNYVAQWFTKPIVEKF 248
           M++Y  +PRRIK+VTG TL   +  +L  L+SPFE     L+  G+ V +WF KPIV++F
Sbjct: 685 MLYYGVVPRRIKLVTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQF 744

Query: 247 LENDLPTRDEIVKQKINMLFPRPKPE 170
           L N++P++ +++  ++N++FP   PE
Sbjct: 745 LLNEIPSKADVLMHRLNVMFPSSAPE 770


>tr|A3AXC0|A3AXC0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_015442 PE=4 SV=1
          Length = 756

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 36/86 (41%), Positives = 59/86 (68%)
 Frame = -1

Query: 427 MIHYHSLPRRIKIVTGGTLNDPIMDLLRPLDSPFENHGGALQCRGNYVAQWFTKPIVEKF 248
           M++Y  +PRRIK+VTG TL   +  +L  L+SPFE     L+  G+ V +WF KPIV++F
Sbjct: 642 MLYYGVVPRRIKLVTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQF 701

Query: 247 LENDLPTRDEIVKQKINMLFPRPKPE 170
           L N++P++ +++  ++N++FP   PE
Sbjct: 702 LLNEIPSKADVLMHRLNVMFPSSAPE 727


>tr|A2XXF8|A2XXF8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17364 PE=4 SV=1
          Length = 847

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 36/86 (41%), Positives = 59/86 (68%)
 Frame = -1

Query: 427 MIHYHSLPRRIKIVTGGTLNDPIMDLLRPLDSPFENHGGALQCRGNYVAQWFTKPIVEKF 248
           M++Y  +PRRIK+VTG TL   +  +L  L+SPFE     L+  G+ V +WF KPIV++F
Sbjct: 733 MLYYGVVPRRIKLVTGPTLKMVVAQVLASLESPFEVSKVVLRAPGDSVLEWFKKPIVQQF 792

Query: 247 LENDLPTRDEIVKQKINMLFPRPKPE 170
           L N++P++ +++  ++N++FP   PE
Sbjct: 793 LLNEIPSKADVLMHRLNVMFPSSAPE 818


>tr|Q1ILI9|Q1ILI9_ACIBL Glycosyl transferase, group 1
           OS=Acidobacteria bacterium (strain Ellin345)
           GN=Acid345_3260 PE=4 SV=1
          Length = 364

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
 Frame = -1

Query: 298 RGNYVAQWFTKPIVE-KFLEN----DLPTRDEIVKQKINMLFPRPKPEPYMLIL 152
           RG + +Q   KP V+ KF+E     DLP ++E++K  I MLFP    EP+ L++
Sbjct: 209 RGYWESQ--VKPHVDGKFIEYVGEADLPAKNELLKNSIAMLFPIQWHEPFGLVM 260


>tr|B0CR42|B0CR42_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_301010 PE=4 SV=1
          Length = 1310

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 298 RGNYVAQWFTKPIVEKFLENDLPTRDEIVKQKINMLFPRPKPE 170
           RGN  A  +T   V+KF + D    + + K++ +MLF  P P+
Sbjct: 774 RGNNPAYKWTSLSVDKFFQTDRAASEYVAKKRYSMLFSEPNPK 816


>tr|A1TCC4|A1TCC4_MYCVP Phospholipid/glycerol acyltransferase
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=Mvan_4047 PE=4 SV=1
          Length = 292

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 367 DPIMDLLRPLDSPFEN--HGGALQCRGNYVAQWFTKPIVEKFLENDLPTRDEIVKQKINM 194
           +P++DL RP     EN    G     GN+       P++  ++  ++ TR   + +++  
Sbjct: 32  EPLIDLYRPYVDGLENLPRDGRFLLVGNHTQSSVEGPLIPHYVRREIGTRVRPLTERMMA 91

Query: 193 LFPRP 179
            FPRP
Sbjct: 92  NFPRP 96


>tr|B1B9I0|B1B9I0_CLOBO Dihydroxy-acid dehydratase OS=Clostridium
           botulinum C str. Eklund GN=ilvD PE=4 SV=1
          Length = 554

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -1

Query: 388 VTGGTLNDPIMD-------LLRPLDSPFENHGGALQCRGN 290
           VTG TL + I +       ++RPLD+P+ N GG    RGN
Sbjct: 341 VTGKTLEENIKNSFVLNNTVIRPLDNPYSNEGGIAILRGN 380