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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920972
Clone id YMU001_000144_A06
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTCTTTGCATAATACATTCCATTACATTCACTTCTGCCCGCATTAGAGC
CTGCATCTCCCCTTTCACAGATAGATACATCTCATCATGCTTACCAAGCATCGCTTTATC
GAATTCTTTCCTCATATCTGTATACATAGAATTCTTATAACTCTCTGTGTTTGCCTACAT
CTCTTTCCTGATGTCATCTCTCATAAAGCTGAGCTCAGATTTAATCATCACTTGAACCCT
CTCCATCATTAAATCATCTTGGATTCTGATGGTTTTTCCTGCCCGCAATGAGCTTGGCGA
GAGTATGTCATCTCTCTTCCTCCACGTTGAATGTCGCTTTCATTTTTTGTGGCGTGGTGA
AGGTACTTGCATCACCATCCTCGATTGGTTGGTCCATCCGAGAGAGAAGAACAAAGCGAG
CACTGAGTCAAGGCCCTCACCAGCTGAGGTCTGGCCACCGCCTTGGTTGGCCTTGCCCTC
GTCAC
■■Homology search results ■■ -
sp_hit_id P37216
Definition sp|P37216|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum
Align length 33
Score (bit) 29.6
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920972|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_A06.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37216|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase...    30   6.3  
sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associat...    29   8.2  

>sp|P37216|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2,
           chloroplastic OS=Solanum lycopersicum PE=2 SV=1
          Length = 541

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 252 MVFPARNELGESMSSLFLHVECRFHFLWRGEGT 350
           ++ P    L    S+  LH +C  HFLW GE T
Sbjct: 321 LLLPYEQSLTRRDSTSGLHYDCSAHFLWVGERT 353


>sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associated
            protein homolog (Fragment) OS=Ovis aries GN=ASPM PE=2
            SV=1
          Length = 3374

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 358  VMQVPSPRHKK*KRHSTWRKRDDILSPSSLRAGKTIRIQDDLMMERVQVMIKSELSFMRD 179
            V+Q    RH+   R+  WR+   ++     RAG+  R+Q    +++ +  +  + +F   
Sbjct: 2259 VLQAAFRRHRARARYQAWRRASQVIQ-QRFRAGQAARLQRRQYLQQXRSALVLQAAFRGM 2317

Query: 178  DIRKEM 161
             IR+ +
Sbjct: 2318 RIRRRL 2323
tr_hit_id Q8BUF9
Definition tr|Q8BUF9|Q8BUF9_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 61
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920972|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_A06.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8BUF9|Q8BUF9_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.49 
tr|B6PYS9|B6PYS9_BRAFL Putative uncharacterized protein OS=Branc...    36   0.84 
tr|A7S9F7|A7S9F7_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   1.1  
tr|Q160I1|Q160I1_ROSDO Response regulator NasT OS=Roseobacter de...    34   4.2  
tr|A1VG77|A1VG77_DESVV FlgA family protein OS=Desulfovibrio vulg...    34   4.2  
tr|A7RQY9|A7RQY9_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.2  
tr|Q0I2Q0|Q0I2Q0_HAES1 Long-chain-fatty-acid--CoA ligase OS=Haem...    33   7.1  
tr|B0UTS7|B0UTS7_HAES2 AMP-dependent synthetase and ligase OS=Ha...    33   7.1  
tr|Q3BUB1|Q3BUB1_XANC5 Long-chain-fatty-acid-CoA-ligase RpfB OS=...    33   9.3  
tr|B5J0P6|B5J0P6_9RHOB ANTAR domain protein OS=Octadecabacter an...    33   9.3  
tr|A7SPT0|A7SPT0_NEMVE Predicted protein OS=Nematostella vectens...    33   9.3  

>tr|Q8BUF9|Q8BUF9_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=ENSMUSG00000078084 PE=4 SV=1
          Length = 105

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = +2

Query: 20  IHFCPH*SLHLPFHR*IHLIMLTKHRFIEFFPHICIHRILITLCVCLHLFPDVISHKAEL 199
           +H C H  L++  +  IH+  L + + +E F   C   + + +CVC+ + P +++ K++ 
Sbjct: 38  LHICIHACLYVCMYPYIHMSSLVQKKAVELFKDTC---VCVCVCVCVCVSPHIMNKKSQE 94

Query: 200 R 202
           R
Sbjct: 95  R 95


>tr|B6PYS9|B6PYS9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_112580 PE=4 SV=1
          Length = 379

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 17  YIHFCPH*SLHLPFHR*IHLIMLTKHRFIEFFPHICIHRILITLCVCLHLFPDVISH 187
           YIH   H  +H+  H  IH+ M   H +I  + HI IH I I L + +H++  +  H
Sbjct: 4   YIHIYIHIYMHIYIHIYIHIYM---HIYIHIYMHIYIH-IYIVLHIYIHIYIHIYMH 56



 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 17  YIHFCPH*SLHLPFHR*IHLIMLTKHRFIEFFPHICIH-RILITLCVCLHLFPDVISH 187
           YIH   H  +H+  H  IH+ M   H +I  + HI IH  I I + + +H++  +  H
Sbjct: 50  YIHIYMHIYIHIYMHIYIHIYM---HIYIHIYMHIYIHIYIHIYMHIYIHIYIHIYMH 104



 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 17  YIHFCPH*SLHLPFHR*IHLIMLTKHRFIEFFPHICIH-RILITLCVCLHLFPDVISH 187
           YIH   H  +H+  H  IH+ M   H +I  + HI IH  I I + + +H++  +  H
Sbjct: 222 YIHIYMHIYMHIYIHIYIHIYM---HIYIHIYMHIYIHIYIHIYMHIYMHIYIHIYMH 276



 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 17  YIHFCPH*SLHLPFHR*IHLIM-LTKHRFIEFFPHICIHRIL-ITLCVCLHLFPDVISH 187
           YIH   H  +H+  H  IH+ M +  H +I  + HI IH  + I + + +H++  +  H
Sbjct: 174 YIHIYIHIYMHIYIHIYIHIYMHIYIHIYIHIYMHIYIHIYMHIYIHIYIHIYMHIYMH 232



 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 17  YIHFCPH*SLHLPFHR*IHLIM-LTKHRFIEFFPHICIH-RILITLCVCLHLFPDVISH 187
           YIH   H  +H+  H  IH+ M +  H +I  + HI IH  I I + + +H++  +  H
Sbjct: 290 YIHIYIHIYMHIYIHIYIHIYMHIYIHIYIHIYMHIYIHIYIHIYIHIYIHIYIHIYMH 348


>tr|A7S9F7|A7S9F7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g109933 PE=4 SV=1
          Length = 126

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 2   HNTFHYIHFCPH*SLHLPF---HR*IHLIMLTKHRFIEFFPHICIHRILITLCVCLH 163
           H + H + +CPH SLHL F   H  +HL+    H  +      C H  L  L  C H
Sbjct: 51  HPSLHLLFYCPHPSLHLLFYCPHPSLHLLFYCPHPSLHLL-FYCPHPSLYLLFYCPH 106



 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 2   HNTFHYIHFCPH*SLHLPF---HR*IHLIMLTKHRFIEFFPHICIHRILITLCVCLH 163
           H + H + +CPH SLHL F   H  ++L+    H  +    H C H  L  L  C H
Sbjct: 7   HPSLHLLFYCPHRSLHLLFYCPHPSLYLLFYCPHPSLHLLFH-CPHPSLHLLFYCPH 62



 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 20  IHFCPH*SLHLPF---HR*IHLIMLTKH---RFIEFFPHICIHRILITLCVCLHL 166
           + FCPH SLHL F   HR +HL+    H     + + PH  +H +       LHL
Sbjct: 2   LFFCPHPSLHLLFYCPHRSLHLLFYCPHPSLYLLFYCPHPSLHLLFHCPHPSLHL 56


>tr|Q160I1|Q160I1_ROSDO Response regulator NasT OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=nasT PE=4
           SV=1
          Length = 194

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = -2

Query: 295 DDILSPSSLRAGKTIRIQDDLMMERVQVMIKSELSFMRDDIRKEM*ANTESYKNSMYTDM 116
           DDIL+ ++L AG +  + D L MER++ ++  E +  R  I ++M +  ++ K ++  + 
Sbjct: 87  DDILTQAALSAGVSAYVVDGLKMERIKSVL--ETAIARFKIMRQMQSELDAAKQAL--ED 142

Query: 115 RKEFDKA 95
           RK  D+A
Sbjct: 143 RKTIDRA 149


>tr|A1VG77|A1VG77_DESVV FlgA family protein OS=Desulfovibrio
           vulgaris subsp. vulgaris (strain DP4) GN=Dvul_2427 PE=3
           SV=1
          Length = 324

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 VAFIFCGVVKVLASPSSIGWSIRERRTKRALSQGP 420
           +AF+ CGVV VLA+    GW IR R  + A+  GP
Sbjct: 12  MAFVLCGVVAVLAATGDAGWRIRLR--EAAVVAGP 44


>tr|A7RQY9|A7RQY9_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g66182 PE=4 SV=1
          Length = 131

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -2

Query: 226 ERVQVMIKSELSFMRDDIRKEM*ANTESYKNSMYTDMRKEFDKAMLGKHDEMYLSVKGEM 47
           E V   ++ +L+  +D+I KE+    E  K  M   M +EF+K    + +++ L  +GE 
Sbjct: 14  EMVAKRVEEQLAKRKDEIDKEVMRRVEEAKKIMEQQMLEEFEKRKQEQIEQLRLREEGER 73

Query: 46  QALMRAEVNVME 11
           Q   R +  V E
Sbjct: 74  QERERLQKLVAE 85


>tr|Q0I2Q0|Q0I2Q0_HAES1 Long-chain-fatty-acid--CoA ligase
           OS=Haemophilus somnus (strain 129Pt) GN=fadD PE=3 SV=1
          Length = 560

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 253 IRIQDDLMMERVQV-MIKSELSFMRDDIRKEM*ANTESYKNSMYTDMRKEFDKAMLGK 83
           I I D++  E++++ ++K + S  RD+IR+        YK   Y + R E  K+ +GK
Sbjct: 488 IGIPDEVSGEKIKIFVVKKDDSLTRDEIRQHCRQYLTGYKIPKYIEFRDELPKSNVGK 545


>tr|B0UTS7|B0UTS7_HAES2 AMP-dependent synthetase and ligase
           OS=Haemophilus somnus (strain 2336) GN=HSM_1202 PE=3
           SV=1
          Length = 560

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 253 IRIQDDLMMERVQV-MIKSELSFMRDDIRKEM*ANTESYKNSMYTDMRKEFDKAMLGK 83
           I I D++  E++++ ++K + S  RD+IR+        YK   Y + R E  K+ +GK
Sbjct: 488 IGIPDEVSGEKIKIFVVKKDDSLTRDEIRQHCRQYLTGYKIPKYIEFRDELPKSNVGK 545


>tr|Q3BUB1|Q3BUB1_XANC5 Long-chain-fatty-acid-CoA-ligase RpfB
           OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
           GN=rpfB PE=3 SV=1
          Length = 560

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 253 IRIQDDLMMERVQ-VMIKSELSFMRDDIRKEM*ANTESYKNSMYTDMRKEFDKAMLGK 83
           + + DD   E V+ V++K + +   DD++    AN   YK     + RKE  K  +GK
Sbjct: 491 VGVPDDKSGEIVKAVIVKKDPALTADDVKAHCRANLTGYKQPRVIEFRKELPKTNVGK 548


>tr|B5J0P6|B5J0P6_9RHOB ANTAR domain protein OS=Octadecabacter
           antarcticus 307 GN=OA307_4143 PE=4 SV=1
          Length = 194

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/67 (29%), Positives = 40/67 (59%)
 Frame = -2

Query: 295 DDILSPSSLRAGKTIRIQDDLMMERVQVMIKSELSFMRDDIRKEM*ANTESYKNSMYTDM 116
           DDIL+ ++L AG +  + D L M+R++ ++  E +  R  I ++M +  ++ K ++  + 
Sbjct: 87  DDILTQAALSAGVSAYVVDGLKMDRIKSVL--ETAIARFKIMRQMQSELDAAKQAL--ED 142

Query: 115 RKEFDKA 95
           RK  D+A
Sbjct: 143 RKTIDRA 149