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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920910
Clone id YMU001_000143_C05
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCAAAGCTAATGGGTAAAAAGGATGCAAACCATCTTGATGATGAACGTTAGAGTATTG
CTAATAGACAACACACATCTCTACAAACTGAACCACATCTTTATACATGGATTTCCAATA
GTATCGATCTTAATATTTGACATAGTAGCCCAAACACCTTTGTGTCCAACCCACAAACTC
TTGTGAAACTCTTTGAGTACCTGTTGTTGAATAGCTTTGTGACATAAAATCCATTGTGAA
ACTCCTTTAGCTAGCTTTGGCTGCTGCCACAAATATCCATAATTCAAGAAGTAGCCATAA
GCCTTCTTTCAAATCTTCTTGAACTCTACATCACTTCAATAATCTTGGTTCTCAAGTGTA
CCAAGATAGCGACCAATAATTGGCCACTCACCATCATACATAGACTCAGTAAATGCTTCA
AACACTTGAGCAATAGAACCTCAATTAGCATGAATGAGATGATGTATAGAAATTCAAAGC
CACATCATCACTCGTTGTTAGTATCTCCTCGTCATCTTCATACCTAGCTCGAGACAACAT
GTCAACAACTGGATTATCTCTCCGG
■■Homology search results ■■ -
sp_hit_id O27428
Definition sp|O27428|SYI_METTH Isoleucyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum
Align length 74
Score (bit) 30.4
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920910|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_C05.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O27428|SYI_METTH Isoleucyl-tRNA synthetase OS=Methanobacteriu...    30   6.3  
sp|O29622|SYI_ARCFU Isoleucyl-tRNA synthetase OS=Archaeoglobus f...    30   8.2  

>sp|O27428|SYI_METTH Isoleucyl-tRNA synthetase OS=Methanobacterium
           thermoautotrophicum GN=ileS PE=3 SV=3
          Length = 1044

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -3

Query: 374 GRYLGTL---ENQDY*SDVEFKKI*KKAYGYFLNYGYLWQ--QPKLAKGVSQWILCHKAI 210
           G+Y G      ++D  +D+  K +  KA      YG+ W+   P +     QW L    I
Sbjct: 352 GKYSGRFVKDADEDIIADLRSKGLLLKAGTISHRYGFCWRCKTPIIYLATEQWFLKITEI 411

Query: 209 QQQVLKEFHKSLWV 168
           + ++L+E  +  WV
Sbjct: 412 KDKMLRELDRVQWV 425


>sp|O29622|SYI_ARCFU Isoleucyl-tRNA synthetase OS=Archaeoglobus
           fulgidus GN=ileS PE=3 SV=1
          Length = 1018

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 281 YGYLWQ--QPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIGN 111
           YG+ W+   P + +   QW +    ++ ++L+E  K +W+     WA  +  K D + N
Sbjct: 388 YGHCWRCKTPIIYRATEQWFIKISELKDEMLEEIDKVMWIPE---WAGSARFK-DWVSN 442
tr_hit_id Q9XZR7
Definition tr|Q9XZR7|Q9XZR7_DROBU Protease, reverse transcriptase, ribonuclease H, integrase (Fragment) OS=Drosophila buzzatii
Align length 24
Score (bit) 32.0
E-value 0.079
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920910|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_C05.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XZR7|Q9XZR7_DROBU Protease, reverse transcriptase, ribonucl...    32   0.079
tr|Q1DIU3|Q1DIU3_COCIM Putative uncharacterized protein OS=Cocci...    28   0.39 
tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative, unclas...    32   0.60 
tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus ...    28   0.61 
tr|A5AXA1|A5AXA1_VITVI Putative uncharacterized protein OS=Vitis...    28   0.67 
tr|A5C005|A5C005_VITVI Putative uncharacterized protein OS=Vitis...    29   0.81 
tr|Q8SA91|Q8SA91_MAIZE Putative gag-pol polyprotein OS=Zea mays ...    28   0.97 
tr|A5BUN0|A5BUN0_VITVI Putative uncharacterized protein OS=Vitis...    29   1.0  
tr|Q7M3L4|Q7M3L4_DROBU Putative uncharacterized protein 2 (Clone...    30   1.0  
tr|B3GXM4|B3GXM4_ACTP7 Putative uncharacterized protein OS=Actin...    36   1.3  
tr|B0BP50|B0BP50_ACTPJ Putative uncharacterized protein OS=Actin...    36   1.3  
tr|A5BVZ5|A5BVZ5_VITVI Putative uncharacterized protein OS=Vitis...    29   1.3  
tr|A6QZR6|A6QZR6_AJECN Putative uncharacterized protein OS=Ajell...    29   1.3  
tr|B5DU05|B5DU05_DROPS GA22199 OS=Drosophila pseudoobscura pseud...    30   1.6  
tr|Q8SAX4|Q8SAX4_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    34   1.7  
tr|Q10B80|Q10B80_ORYSJ Os03g0827200 protein OS=Oryza sativa subs...    34   1.7  
tr|Q94GF8|Q94GF8_ORYSA Putative polyprotein, 5'-partial (Fragmen...    34   1.7  
tr|A6R7Z7|A6R7Z7_AJECN Putative uncharacterized protein OS=Ajell...    28   2.8  
tr|A6R121|A6R121_AJECN Putative uncharacterized protein OS=Ajell...    28   2.8  
tr|Q1E4C7|Q1E4C7_COCIM Putative uncharacterized protein OS=Cocci...    35   2.9  
tr|A5AP28|A5AP28_VITVI Putative uncharacterized protein OS=Vitis...    27   2.9  
tr|A5AXU3|A5AXU3_VITVI Putative uncharacterized protein OS=Vitis...    29   3.5  
tr|A5AUJ7|A5AUJ7_VITVI Putative uncharacterized protein OS=Vitis...    29   3.5  
tr|A5BG43|A5BG43_VITVI Putative uncharacterized protein OS=Vitis...    27   3.5  
tr|A5AMU3|A5AMU3_VITVI Putative uncharacterized protein OS=Vitis...    29   3.6  
tr|B6AFA4|B6AFA4_9CRYT HEAT repeat family protein OS=Cryptospori...    35   3.7  
tr|A5AD26|A5AD26_VITVI Putative uncharacterized protein OS=Vitis...    27   3.7  
tr|A5AGW4|A5AGW4_VITVI Putative uncharacterized protein OS=Vitis...    30   4.6  
tr|B4NGF2|B4NGF2_DROWI GK12692 OS=Drosophila willistoni GN=GK126...    27   6.2  
tr|B7F615|B7F615_ORYSJ cDNA clone:J013129I18, full insert sequen...    30   6.3  

>tr|Q9XZR7|Q9XZR7_DROBU Protease, reverse transcriptase,
           ribonuclease H, integrase (Fragment) OS=Drosophila
           buzzatii GN=pol PE=4 SV=1
          Length = 1147

 Score = 32.0 bits (71), Expect(2) = 0.079
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 126 RYYWKSMYKDVVQFVEMCVVY*QY 55
           RYYW  MY+DV  +V+ C V  +Y
Sbjct: 812 RYYWPGMYRDVRNYVQRCEVCQRY 835



 Score = 26.9 bits (58), Expect(2) = 0.079
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 242 VSQWILCHKAIQQ-QVLKEFHKSLWVGHKGVWATMSNI 132
           V+ W LC    ++ QVLKE H ++  GH G   T++ +
Sbjct: 772 VAAWKLCVSTDRRKQVLKENHDAVTAGHLGSRKTIARV 809


>tr|Q1DIU3|Q1DIU3_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09770 PE=4 SV=1
          Length = 350

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 407 ESMYDGEWPIIGRYLGTLENQDY*SDVEFKKI*KKAYGYFLNYGYLWQQPKLAKGVS-QW 231
           +S Y  E   I +YL TL         E+ +  KKA  Y +    L++Q     GVS + 
Sbjct: 224 DSTYSEESEKIAQYLTTLSKPLGMEGKEYTRFQKKAIKYVMEANQLFRQ--AGSGVSLRH 281

Query: 230 ILCHKAIQQQVLKEFHKSLWVGHKGVWATMS 138
           ++ +K   +Q+L   H     GHK    T S
Sbjct: 282 VVDNKEQHKQILHMMHDKF--GHKEQEGTYS 310



 Score = 28.1 bits (61), Expect(2) = 0.39
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 126 RYYWKSMYKDVVQFVEMCVVY*QYSNVHHQDGLH 25
           +Y+W  MYKDV  +V+ C    Q  +    + LH
Sbjct: 315 QYWWSGMYKDVSAYVKHCSQCQQKDSQRLSEELH 348


>tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g24050 PE=4 SV=1
          Length = 1548

 Score = 32.3 bits (72), Expect(2) = 0.60
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 302  AYGYFLNYGYLWQQPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIK 129
            A G+ L +G + ++ ++      W+  + A+  +++  FH S   GH GV AT   +K
Sbjct: 1077 ASGFSLVHGLIKKKGRI------WLGANSALHTKIISSFHDSAIGGHSGVMATYHRVK 1128



 Score = 23.5 bits (49), Expect(2) = 0.60
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 123  YYWKSMYKDVVQFVEMCVV 67
            + WK +   V +F++ CVV
Sbjct: 1131 FVWKGLKHSVEEFIQQCVV 1149


>tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus
           PE=4 SV=1
          Length = 953

 Score = 28.1 bits (61), Expect(2) = 0.61
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 126 RYYWKSMYKDVVQFVEMCVV 67
           ++YWK + +DV QFV  C V
Sbjct: 733 QFYWKGLRRDVEQFVRECSV 752



 Score = 27.7 bits (60), Expect(2) = 0.61
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 275 YLWQQPKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIK 129
           Y W Q +L +     +     ++ Q++  FH S   GH G+ AT   +K
Sbjct: 683 YTWVQDQLRRKGKLVVGSDPGLKLQLIHNFHASSIGGHSGMEATTRKLK 731


>tr|A5AXA1|A5AXA1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025576 PE=4 SV=1
          Length = 269

 Score = 28.5 bits (62), Expect(2) = 0.67
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 126 RYYWKSMYKDVVQFVEMCVVY 64
           ++YW SMY+ V +++  C VY
Sbjct: 130 QFYWPSMYQFVQEYITQCEVY 150



 Score = 27.3 bits (59), Expect(2) = 0.67
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 230 ILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNI 132
           ++  + I+ Q+LK FH S  VGH  V  T   +
Sbjct: 95  VVXPQTIRNQLLKXFHDSKMVGHSXVSRTFKRL 127


>tr|A5C005|A5C005_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007109 PE=4 SV=1
          Length = 591

 Score = 29.3 bits (64), Expect(2) = 0.81
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 254 LAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMS 138
           +AKG  +W +    +++ +L+E H S W GH G   T++
Sbjct: 211 VAKG-ERWYVPTGGLRKDLLRETHDSKWAGHPGEERTLA 248



 Score = 26.2 bits (56), Expect(2) = 0.81
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 123 YYWKSMYKDVVQFVEMCVVY*QYSNVHHQDGLHPFYPLAL 4
           YYW  M +DV   V+ C+V  Q   +  + G+    PL +
Sbjct: 254 YYWPKMGEDVQACVKSCLVC-QMDKIERKKGVGLLQPLPI 292


>tr|Q8SA91|Q8SA91_MAIZE Putative gag-pol polyprotein OS=Zea mays
            GN=Z195D10.11 PE=4 SV=1
          Length = 2396

 Score = 28.5 bits (62), Expect(2) = 0.97
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 144  YVKY*DRYYWKSMYKDVVQFVEMCVV 67
            Y K    +YW  M  DV+Q+V+ C V
Sbjct: 1144 YHKVKQMFYWPGMRADVLQYVQSCTV 1169



 Score = 26.6 bits (57), Expect(2) = 0.97
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 233  WILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIK 129
            W+  +  +QQ+VL+  H +   GH G  AT   +K
Sbjct: 1114 WLGGNLQLQQKVLQAMHDTAVGGHSGAPATYHKVK 1148


>tr|A5BUN0|A5BUN0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030159 PE=4 SV=1
          Length = 1330

 Score = 29.3 bits (64), Expect(2) = 1.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 254 LAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMS 138
           +AKG  +W +    +++ +L+E H S W GH G   T++
Sbjct: 779 VAKG-GRWYVPAGGLRKDLLRETHDSKWAGHPGEERTLA 816



 Score = 25.8 bits (55), Expect(2) = 1.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 123 YYWKSMYKDVVQFVEMCVV 67
           YYW  M +DV  +V+ C+V
Sbjct: 822 YYWPKMGEDVQAYVKSCLV 840


>tr|Q7M3L4|Q7M3L4_DROBU Putative uncharacterized protein 2 (Clone
           Db314) OS=Drosophila buzzatii GN=pol PE=4 SV=1
          Length = 754

 Score = 30.0 bits (66), Expect(2) = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 126 RYYWKSMYKDVVQFVEMCVVY*QY 55
           RYYW  MY++V  +V+ C V  +Y
Sbjct: 508 RYYWPGMYRNVRNYVQRCEVCQRY 531



 Score = 25.0 bits (53), Expect(2) = 1.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 242 VSQWILCHKAIQQ-QVLKEFHKSLWVGHKGVWATMSNI 132
           V+ W LC    ++ QVL+E H ++  GH G   T++ +
Sbjct: 468 VAAWKLCVPTDRRRQVLEENHDAVTAGHLGSRKTIARV 505


>tr|B3GXM4|B3GXM4_ACTP7 Putative uncharacterized protein
           OS=Actinobacillus pleuropneumoniae serotype 7 (strain
           AP76) GN=APP7_0831 PE=4 SV=1
          Length = 101

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = -3

Query: 284 NYGYLWQQ-PKLAKGVSQWILCHKAIQQQVLKEFHKSLWVGHKGVWATMSNIKIDTIGN 111
           NYG L +  P+L K +SQW   ++ I QQ+ + +H SLW+    ++    NI+I+T GN
Sbjct: 11  NYGKLVELLPELEKSLSQWQESYQLI-QQLNQFYHSSLWL---ELYDNADNIQIETNGN 65