BP920801
Clone id YMU001_000141_G10
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATTCGCGGCCGCGAATGCGACACTTGTGATAAACCTCGCAAGCCAATCTACACAGCCTTG
AAAAGGCATGATCACACCCATCCCTGTCAACAGCCATAGAGACCTTTTACATGCTCATCA
CCATGTCAACTGGCATAGCCAAGACGTGTTCATATAGCTGCACTCTGCACCTTAAGTCTG
CAAGTACATCACATGACAAAAGTGTGCTAATTGATGCAACTCATAGAAGATCATTGAAAT
TGCGAAGCTTCAACATTGCAACAATTCAACTATGAATTTATCAACAACCAAAGGCGCAAG
CAACCTGAACCACAAGTGATAAGAGTATTATCTCCAAACATCCGCTCAAGATGAAGTCTA
TCATCATACCATACTCCATGATTGTTGAGTTTCTTCAGCTTCAAGAGTAATGCACAGTAG
AATTCAATATGACCATTGCATTTCACTTCGTGGG
■■Homology search results ■■ -
sp_hit_id Q6ZPG2
Definition sp|Q6ZPG2|WDR90_MOUSE WD repeat-containing protein 90 OS=Mus musculus
Align length 44
Score (bit) 30.4
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920801|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G10.
(438 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6ZPG2|WDR90_MOUSE WD repeat-containing protein 90 OS=Mus mus... 30 3.4
sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis... 30 3.4
sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein ka... 29 9.8

>sp|Q6ZPG2|WDR90_MOUSE WD repeat-containing protein 90 OS=Mus
musculus GN=Wdr90 PE=1 SV=2
Length = 1874

Score = 30.4 bits (67), Expect = 3.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3

Query: 352 YDDRLHLERMFGDNTLITCGSGCLRLWLLINS*LNCCNVEASQF 221
+D R F + + +CG G +RLW L L C V+ ++
Sbjct: 567 FDIRAFQVAFFDETRMASCGRGSVRLWRLRGGVLRSCAVDLGEY 610


>sp|Q8W104|FBL17_ARATH F-box/LRR-repeat protein 17 OS=Arabidopsis
thaliana GN=FBL17 PE=1 SV=1
Length = 593

Score = 30.4 bits (67), Expect = 3.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2

Query: 98 LITMSTGIAKTCSYSCTLHLKSASTSHDKSVLIDATHRRSLKLRS 232
L+TM G+ +TC+ +H+ S SH + + A + R L++ S
Sbjct: 314 LVTMVDGLGRTCTRLQNIHIASLKLSHTVVLSLTAVNFRYLRMLS 358


>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput
OS=Rattus norvegicus GN=Clock PE=2 SV=1
Length = 862

Score = 28.9 bits (63), Expect = 9.8
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2

Query: 146 TLHLKSASTSHDKSVLIDATHRRSLKLRSFNIATIQL*IYQQPKAQAT*TTSDKSIISKH 325
+L+ S ST + I THR S + R +AT++L Q K T ++ S+H
Sbjct: 221 SLNSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRH 280

Query: 326 PLKMKSIIIPY 358
L+ K + + +
Sbjct: 281 SLEWKFLFLDH 291


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920801|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G10.
(438 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******