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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920654
Clone id YMU001_000139_G11
Library
Length 329
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATAATTCCTCTCTTGGCAAGCAACAAGACATTGAACAGAGACGTTGTCAATCAAGAGG
GGAAAATCTGCCGAATGTCTCAGAAAATTTACAAACTTTGCCCTCAAGCAAAAGGAACTA
GCTGTCCTTAATAGCTGCATCCCTTTCTGATTTCTCATCTCCTATAGACTCCGGTACAGA
TGACACACTATCATGGCGCAAGAGGAAATTTGTGACAAATGGAAGGATCTCCTTTCTAGC
CTCGCGTCCACAGACGAGATCGTAGTGGCCATAGTGAATATTTTTCTCCCCCCCAAACAG
CTTGTACTCAACCAGCTTCTCTGGCAGTG
■■Homology search results ■■ -
sp_hit_id P15056
Definition sp|P15056|BRAF1_HUMAN B-Raf proto-oncogene serine/threonine-protein kinase OS=Homo sapiens
Align length 88
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920654|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_G11.
         (314 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15056|BRAF1_HUMAN B-Raf proto-oncogene serine/threonine-prot...    32   0.75 
sp|P34908|BRAF1_COTJA B-Raf proto-oncogene serine/threonine-prot...    30   3.7  
sp|Q04982|BRAF1_CHICK B-Raf proto-oncogene serine/threonine-prot...    30   3.7  
sp|Q54RP7|Y0652_DICDI Probable serine/threonine-protein kinase D...    30   4.9  
sp|Q05017|PLB1_RABIT Phospholipase B1, membrane-associated OS=Or...    30   4.9  
sp|P78898|TGCE2_SCHPO Probable lipase C16A3.12c OS=Schizosacchar...    29   8.3  
sp|Q9RTD8|PROB_DEIRA Glutamate 5-kinase OS=Deinococcus radiodura...    29   8.3  
sp|O78475|ATPA_GUITH ATP synthase subunit alpha, chloroplastic O...    29   8.3  

>sp|P15056|BRAF1_HUMAN B-Raf proto-oncogene serine/threonine-protein
           kinase OS=Homo sapiens GN=BRAF PE=1 SV=4
          Length = 766

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = +2

Query: 2   YNSSLGKQQDIEQRRCQSRGENLP---NVSENLQTLPSSKRN*LSLIAASLSDFSSPIDS 172
           Y S L   Q  EQ+  +S G       + S ++ T+ SS  + LS++ +SLS F +P D 
Sbjct: 85  YTSKLDALQQREQQLLESLGNGTDFSVSSSASMDTVTSSSSSSLSVLPSSLSVFQNPTDV 144

Query: 173 GTDDTLSWRK---RKFVTNGRISFLASR 247
              +  S +K   R F+ N + + + +R
Sbjct: 145 ARSNPKSPQKPIVRVFLPNKQRTVVPAR 172


>sp|P34908|BRAF1_COTJA B-Raf proto-oncogene serine/threonine-protein
           kinase OS=Coturnix coturnix japonica GN=BRAF PE=2 SV=1
          Length = 807

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +2

Query: 2   YNSSLGKQQDIEQRRCQSRGENLP---NVSENLQTLPSSKRN*LSLIAASLSDFSSPIDS 172
           Y S L   Q  EQ+  +S G       + S +  T+ SS  + LS+  +SLS + +P D 
Sbjct: 85  YTSKLDALQQREQQLLESMGNGTDFSVSSSASTDTVASSSSSSLSVAPSSLSVYQNPTDM 144

Query: 173 GTDDTLSWRK---RKFVTNGRISFLASR 247
             ++  S +K   R F+ N + + + +R
Sbjct: 145 SRNNPKSPQKPIVRVFLPNKQRTVVPAR 172


>sp|Q04982|BRAF1_CHICK B-Raf proto-oncogene serine/threonine-protein
           kinase OS=Gallus gallus GN=BRAF PE=1 SV=1
          Length = 806

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +2

Query: 2   YNSSLGKQQDIEQRRCQSRGENLP---NVSENLQTLPSSKRN*LSLIAASLSDFSSPIDS 172
           Y S L   Q  EQ+  +S G       + S +  T+ SS  + LS+  +SLS + +P D 
Sbjct: 85  YTSKLDALQQREQQLLESMGNGTDFSVSSSASTDTVASSSSSSLSVAPSSLSVYQNPTDM 144

Query: 173 GTDDTLSWRK---RKFVTNGRISFLASR 247
             ++  S +K   R F+ N + + + +R
Sbjct: 145 SRNNPKSPQKPIVRVFLPNKQRTVVPAR 172


>sp|Q54RP7|Y0652_DICDI Probable serine/threonine-protein kinase
           DDB_G0283065 OS=Dictyostelium discoideum GN=DDB_G0283065
           PE=3 SV=1
          Length = 637

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 2   YNSSLGKQQDIEQRRCQSRGENLPNVSENLQTLPSSKRN*LSLIAASLSDFSSPIDSGTD 181
           Y  S  +++ I        GEN  N+ EN+ + PSS  + +S  A+     SS + S + 
Sbjct: 295 YYGSWIEEEIITNNSIDHYGENDNNLFENIDSFPSSSYSSVSAAAS-----SSSLVSNSS 349

Query: 182 DTLSWRKRKFVTNGRISFLAS 244
           ++ S  K  +++N   S  +S
Sbjct: 350 NSYSNNKATYISNSSSSSSSS 370


>sp|Q05017|PLB1_RABIT Phospholipase B1, membrane-associated
           OS=Oryctolagus cuniculus GN=PLB1 PE=2 SV=1
          Length = 1458

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = -3

Query: 243 EARKEILPFVTNFLLRHDSVSSVPESIGDEKSERDAAIKDS*FLLLEGKVCKFSETFGRF 64
           E+   + P    F+    +V + P+S  D+  E+D   K      + G V   S+  GRF
Sbjct: 60  ESVHSLRPSDIKFVAAIGNVETAPDSGADDLEEQDGTEKRPEQACM-GVVTVLSDIIGRF 118

Query: 63  SPLD*QRLCSMSCCLPR 13
           SP     LC  +  +PR
Sbjct: 119 SPSALMPLCPETRLVPR 135


>sp|P78898|TGCE2_SCHPO Probable lipase C16A3.12c
           OS=Schizosaccharomyces pombe GN=SPBC16A3.12c PE=2 SV=2
          Length = 443

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 276 HYGHYDLVCGREARKEILPFVTNFLLRH 193
           HY H D + G++ ++E+ P V + L  H
Sbjct: 401 HYEHLDFLWGQDVKEEVFPVVIDALKHH 428


>sp|Q9RTD8|PROB_DEIRA Glutamate 5-kinase OS=Deinococcus radiodurans
           GN=proB PE=3 SV=1
          Length = 363

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 182 HLYRSL*EMRNQKGMQLLRTASSFCLRAKFVN 87
           HLY SL E+   +  QLL TA  F  R +++N
Sbjct: 81  HLYTSLAELYGLRSAQLLLTADDFRERTRYLN 112


>sp|O78475|ATPA_GUITH ATP synthase subunit alpha, chloroplastic
           OS=Guillardia theta GN=atpA PE=3 SV=1
          Length = 502

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +2

Query: 8   SSLGKQQDIEQRRCQSRGENLPNVSENLQTLPSSKRN*LSLIAASLSDFSSPIDSGTDDT 187
           S      D   R   +RG+ L  + +  Q  P S    +++I   ++ +        DD 
Sbjct: 397 SQFASDLDQATRNQLARGQRLREILKQPQNSPISVEEQVAIIYTGINGY-------LDDI 449

Query: 188 LSWRKRKFVTNGRISFLASRPQ 253
              + R+FVTN R +   S+PQ
Sbjct: 450 AVDKVRRFVTNLRTNLKNSKPQ 471
tr_hit_id A9T780
Definition tr|A9T780|A9T780_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 37
Score (bit) 58.2
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920654|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_G11.
         (314 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T780|A9T780_PHYPA Predicted protein (Fragment) OS=Physcomit...    58   2e-07
tr|B6SVG4|B6SVG4_MAIZE Putative uncharacterized protein OS=Zea m...    57   6e-07
tr|B4F9I4|B4F9I4_MAIZE Putative uncharacterized protein OS=Zea m...    57   6e-07
tr|Q5N7R5|Q5N7R5_ORYSJ Putative uncharacterized protein P0034C09...    53   9e-06
tr|Q0JK71|Q0JK71_ORYSJ Os01g0692600 protein OS=Oryza sativa subs...    53   9e-06
tr|A2ZWS5|A2ZWS5_ORYSJ Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|A2WU05|A2WU05_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|O23987|O23987_HORVU Expressed sequence tag (Fragment) OS=Hord...    52   1e-05
tr|Q9M9P9|Q9M9P9_ARATH T15D22.11 protein OS=Arabidopsis thaliana...    48   3e-04
tr|Q8RX69|Q8RX69_ARATH At1g15070/F9L1_1 (Putative uncharacterize...    48   3e-04
tr|Q67YM2|Q67YM2_ARATH Putative uncharacterized protein At1g1507...    48   3e-04
tr|A9SSW5|A9SSW5_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|A7PGY7|A7PGY7_VITVI Chromosome chr17 scaffold_16, whole genom...    47   6e-04
tr|A5BVW5|A5BVW5_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|Q9C9T7|Q9C9T7_ARATH Putative uncharacterized protein F25P22.1...    46   8e-04
tr|Q8W568|Q8W568_ARATH At1g73750/F25P22_17 OS=Arabidopsis thalia...    46   8e-04
tr|Q6YZK1|Q6YZK1_ORYSJ cDNA clone:J023107D13, full insert sequen...    45   0.002
tr|Q0J671|Q0J671_ORYSJ Os08g0359300 protein OS=Oryza sativa subs...    45   0.002
tr|B8BA13|B8BA13_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A3BSD4|A3BSD4_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A7P3E1|A7P3E1_VITVI Chromosome chr1 scaffold_5, whole genome ...    44   0.004
tr|A4SBG4|A4SBG4_OSTLU Predicted protein OS=Ostreococcus lucimar...    41   0.026
tr|Q00VN8|Q00VN8_OSTTA Homology to unknown gene OS=Ostreococcus ...    40   0.076
tr|Q2IHF4|Q2IHF4_ANADE Alpha/beta hydrolase fold-1 OS=Anaeromyxo...    39   0.13 
tr|B4UJ11|B4UJ11_ANASK Alpha/beta hydrolase fold OS=Anaeromyxoba...    36   0.84 
tr|B8JCK0|B8JCK0_9DELT Alpha/beta hydrolase fold protein OS=Anae...    36   0.84 
tr|Q0U786|Q0U786_PHANO Putative uncharacterized protein OS=Phaeo...    34   3.2  
tr|Q1DF33|Q1DF33_MYXXD Hydrolase, alpha/beta fold family OS=Myxo...    34   4.2  
tr|Q9JJU6|Q9JJU6_MOUSE B-Raf protein (Fragment) OS=Mus musculus ...    33   5.5  
tr|Q1DCD0|Q1DCD0_MYXXD Hydrolase, alpha/beta fold family OS=Myxo...    33   5.5  

>tr|A9T780|A9T780_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_11872 PE=4 SV=1
          Length = 517

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFL 202
           V YKLFGGE + HYGHYDL+C R A++E+ P +T+FL
Sbjct: 481 VTYKLFGGEDDRHYGHYDLLCSRTAKREVYPVITDFL 517


>tr|B6SVG4|B6SVG4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 592

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FGG +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 548 VTYKVFGGPEGPHYAHYDLVGGRKAVHEVYPCIIKFLFQHDEVSS 592


>tr|B4F9I4|B4F9I4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 479

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FGG +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 435 VTYKVFGGPEGPHYAHYDLVGGRKAVHEVYPCIIKFLFQHDEVSS 479


>tr|Q5N7R5|Q5N7R5_ORYSJ Putative uncharacterized protein P0034C09.29
           OS=Oryza sativa subsp. japonica GN=P0034C09.29 PE=4 SV=1
          Length = 489

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FG  +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 445 VTYKVFGKPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDEVSS 489


>tr|Q0JK71|Q0JK71_ORYSJ Os01g0692600 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0692600 PE=4 SV=1
          Length = 614

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FG  +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 570 VTYKVFGKPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDEVSS 614


>tr|A2ZWS5|A2ZWS5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002997 PE=4 SV=1
          Length = 629

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FG  +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 585 VTYKVFGKPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDEVSS 629


>tr|A2WU05|A2WU05_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03352 PE=4 SV=1
          Length = 596

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FG  +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 552 VTYKVFGKPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDEVSS 596


>tr|O23987|O23987_HORVU Expressed sequence tag (Fragment) OS=Hordeum
           vulgare PE=2 SV=1
          Length = 108

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDSVSS 178
           V YK+FG  +  HY HYDLV GR+A  E+ P +  FL +HD VSS
Sbjct: 64  VIYKVFGEPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDDVSS 108


>tr|Q9M9P9|Q9M9P9_ARATH T15D22.11 protein OS=Arabidopsis thaliana
           GN=T15D22.11 PE=4 SV=1
          Length = 55

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDS 187
           V YKL G     HY HYDLV GR A +++ P +T FL  HDS
Sbjct: 13  VTYKLLGEPDGPHYAHYDLVGGRLAVEQVYPCITEFLSHHDS 54


>tr|Q8RX69|Q8RX69_ARATH At1g15070/F9L1_1 (Putative uncharacterized
           protein At1g15070) OS=Arabidopsis thaliana GN=At1g15070
           PE=2 SV=1
          Length = 578

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = -3

Query: 312 VEYKLFGGEKNIHYGHYDLVCGREARKEILPFVTNFLLRHDS 187
           V YKL G     HY HYDLV GR A +++ P +T FL  HDS
Sbjct: 536 VTYKLLGEPDGPHYAHYDLVGGRLAVEQVYPCITEFLSHHDS 577