BP920632 |
Clone id |
YMU001_000139_E06 |
Library |
YMU01 |
Length |
377 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000139_E06. |
Accession |
BP920632 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1431Contig1 |
Sequence |
GTGGATGAGATCGATAGGCTGAGACAAAGGACAAATGGAGAAGCTCCTCATGCTCAAAGT GATCCTGATGCCATGATTTGGGAGTATGAGCCCTCTGAAGCACTTTCTCAACTAAAAAAC GATGATTATGAAGAACTCATGATAGCTATGCAAAATATTCTTTATGACGACCTGCGGACT GAAAATGAGAAAAGAGACAGTGTATTACTGGAAGAGTTTGAGAAATCATGTGAGCAAGAG GATCGTGCTCTTTCAATGATGTTGGAACAACTACAAAATAGCGAGGAGGATGAGGTGATT TGCCCCATATGCAAAGCTGGAAAACTTCAGCAAAATCAGCATTTGATTTTTTGCAGTTGC GGGCATCTTCGGCTTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q86UA6 |
Definition |
sp|Q86UA6|RIP_HUMAN RPA-interacting protein OS=Homo sapiens |
Align length |
123 |
Score (bit) |
49.7 |
E-value |
5.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RQ50 |
Definition |
tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
129 |
Score (bit) |
77.0 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920632|Adiantum capillus-veneris mRNA, clone: YMU001_000139_E06. (377 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella paten... 77 4e-13 tr|Q6AT70|Q6AT70_ORYSJ Os05g0417300 protein OS=Oryza sativa subs... 67 3e-10 tr|A3B432|A3B432_ORYSJ Putative uncharacterized protein OS=Oryza... 67 3e-10 tr|A7QB16|A7QB16_VITVI Chromosome chr5 scaffold_72, whole genome... 65 2e-09 tr|B8AYA9|B8AYA9_ORYSI Putative uncharacterized protein OS=Oryza... 64 3e-09 tr|Q9SU10|Q9SU10_ARATH Putative uncharacterized protein T20K18.1... 63 8e-09 tr|A5ALM6|A5ALM6_VITVI Putative uncharacterized protein OS=Vitis... 63 8e-09 tr|B4FC79|B4FC79_MAIZE Putative uncharacterized protein OS=Zea m... 60 7e-08 tr|A7SU16|A7SU16_NEMVE Predicted protein OS=Nematostella vectens... 54 4e-06 tr|B5X5V6|B5X5V6_SALSA RPA-interacting protein A OS=Salmo salar ... 53 9e-06 tr|B6LTX0|B6LTX0_BRAFL Putative uncharacterized protein OS=Branc... 51 3e-05 tr|A4S242|A4S242_OSTLU Predicted protein OS=Ostreococcus lucimar... 50 7e-05 tr|B4DI36|B4DI36_HUMAN cDNA FLJ55061, highly similar to RPA-inte... 50 7e-05 tr|Q012K2|Q012K2_OSTTA Homology to unknown gene OS=Ostreococcus ... 49 1e-04 tr|Q0P498|Q0P498_DANRE Zgc:153251 OS=Danio rerio GN=zgc:153251 P... 48 2e-04 tr|Q4SB95|Q4SB95_TETNG Chromosome undetermined SCAF14676, whole ... 46 0.001 tr|B6PJC2|B6PJC2_BRAFL Putative uncharacterized protein OS=Branc... 45 0.001 tr|A4SC01|A4SC01_OSTLU Predicted protein OS=Ostreococcus lucimar... 44 0.005 tr|Q2TBS0|Q2TBS0_BOVIN RPA interacting protein OS=Bos taurus GN=... 42 0.015 tr|B1H156|B1H156_XENTR LOC100145305 protein OS=Xenopus tropicali... 41 0.026 tr|A0DH69|A0DH69_PARTE Chromosome undetermined scaffold_50, whol... 39 0.13 tr|Q1CSI7|Q1CSI7_HELPH Putative uncharacterized protein OS=Helic... 39 0.17 tr|B5Z877|B5Z877_HELPG Putative uncharacterized protein OS=Helic... 39 0.17 tr|A0D4S2|A0D4S2_PARTE Chromosome undetermined scaffold_38, whol... 39 0.17 tr|B6JMS1|B6JMS1_HELP2 Putative uncharacterized protein OS=Helic... 38 0.22 tr|B2UUI6|B2UUI6_HELPS Putative uncharacterized protein OS=Helic... 38 0.22 tr|A9UZ06|A9UZ06_MONBE Predicted protein OS=Monosiga brevicollis... 38 0.22 tr|A0BST8|A0BST8_PARTE Chromosome undetermined scaffold_125, who... 38 0.22 tr|Q17YF8|Q17YF8_HELAH Putative uncharacterized protein OS=Helic... 37 0.49 tr|B1S7D9|B1S7D9_9BIFI Putative uncharacterized protein OS=Bifid... 37 0.49
>tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_117635 PE=4 SV=1 Length = 245
Score = 77.0 bits (188), Expect = 4e-13 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Frame = +1
Query: 4 DEIDRLRQRTNGEAPH-----AQSDPDAMIWEYEPSEALSQLKNDDYEELMIAMQNILYD 168 DE+ R+RQ + A + ++ + M+WEYE A ++L N+DY ELM+AM+ LYD Sbjct: 69 DELKRVRQTSTNSAKNDTRRASEKEDSDMLWEYE---APAELANEDYVELMLAMERALYD 125
Query: 169 DLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVICPICKAGKLQQNQHLI 348 D++ E +D + S + + + +D V+CP+CK +L+Q + +I Sbjct: 126 DMQAELRAQDGSNNSQISSSYCPNQKVIHYV--------QDGVLCPLCKKTQLKQIKTVI 177
Query: 349 FCSCGHLRL 375 CSCG RL Sbjct: 178 VCSCGDFRL 186
>tr|Q6AT70|Q6AT70_ORYSJ Os05g0417300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0084P24.18 PE=2 SV=1 Length = 240
Score = 67.4 bits (163), Expect = 3e-10 Identities = 36/127 (28%), Positives = 75/127 (59%), Gaps = 3/127 (2%) Frame = +1
Query: 4 DEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRTE 183 DE+ +L+Q +G+A + + D MIWEY+ + ++ + E++++ M+ +LY+D+R Sbjct: 66 DELQKLKQHGDGKA---EEEAD-MIWEYQGPQTAKPVETES-EDILLEMERLLYEDMR-- 118
Query: 184 NEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAGKLQQNQHLIFC 354 D + E E E+++ LE +Q ++++ ++ CP+CK G+L++ +L++C Sbjct: 119 ----DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQGELRETHNLVYC 174
Query: 355 SCGHLRL 375 + LRL Sbjct: 175 TMCKLRL 181
>tr|A3B432|A3B432_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017804 PE=4 SV=1 Length = 209
Score = 67.4 bits (163), Expect = 3e-10 Identities = 36/127 (28%), Positives = 75/127 (59%), Gaps = 3/127 (2%) Frame = +1
Query: 4 DEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRTE 183 DE+ +L+Q +G+A + + D MIWEY+ + ++ + E++++ M+ +LY+D+R Sbjct: 35 DELQKLKQHGDGKA---EEEAD-MIWEYQGPQTAKPVETES-EDILLEMERLLYEDMR-- 87
Query: 184 NEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAGKLQQNQHLIFC 354 D + E E E+++ LE +Q ++++ ++ CP+CK G+L++ +L++C Sbjct: 88 ----DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQGELRETHNLVYC 143
Query: 355 SCGHLRL 375 + LRL Sbjct: 144 TMCKLRL 150
>tr|A7QB16|A7QB16_VITVI Chromosome chr5 scaffold_72, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034766001 PE=4 SV=1 Length = 193
Score = 64.7 bits (156), Expect = 2e-09 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Frame = +1
Query: 4 DEIDRLRQRTNG---EAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIAMQNILYDD 171 DE+ R R E P + + D M+WEY+ S + EE+M+ +Q + Y+D Sbjct: 11 DELQRFRTSALSGCSEIPTSTAKVDEDMLWEYDGLHTASHF---ECEEVMLELQRMFYED 67
Query: 172 LRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVICPICKAGKLQQNQHLIF 351 +R RD E+ + D A+ L + E+ CPICK GKL+QN HLI+ Sbjct: 68 IRMNQTHRDGCNGTTEEEDEDYLDPAIFENLRLEDDKGCKEIWCPICKKGKLRQNNHLIY 127
Query: 352 CSCGHLRL 375 C+ L L Sbjct: 128 CTLCELGL 135
>tr|B8AYA9|B8AYA9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19983 PE=4 SV=1 Length = 240
Score = 64.3 bits (155), Expect = 3e-09 Identities = 36/128 (28%), Positives = 73/128 (57%), Gaps = 4/128 (3%) Frame = +1
Query: 4 DEIDRLRQRTNGEAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRT 180 DE+ +L+Q +G+A D +A MIWEY+ + ++ + E++++ M+ +LY D+R Sbjct: 66 DELQKLKQHGDGKA-----DQEADMIWEYQGPQTAKPVETES-EDILLEMERLLYKDMR- 118
Query: 181 ENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAGKLQQNQHLIF 351 D + E E E+++ LE +Q ++++ ++ CP+CK G+L++ +L++ Sbjct: 119 -----DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQGELRETHNLVY 173
Query: 352 CSCGHLRL 375 C+ L L Sbjct: 174 CTMCKLHL 181
>tr|Q9SU10|Q9SU10_ARATH Putative uncharacterized protein T20K18.110 (Putative uncharacterized protein AT4g12760) OS=Arabidopsis thaliana GN=T20K18.110 PE=4 SV=1 Length = 227
Score = 62.8 bits (151), Expect = 8e-09 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%) Frame = +1
Query: 61 DPDAMIWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRTENEKRDS-VLLEEFEKSCEQ 237 D D ++WEYE E L + D EE+++ MQ I Y DL +E S V +E +E ++ Sbjct: 65 DCDDILWEYE--EGLKGVYEGDSEEILLEMQQIFYKDLLSETNVNGSFVQVETWE---DE 119
Query: 238 EDRALSMMLEQ--LQNSEEDE--VICPICKAGKLQQNQHLIFCSCGHLRL 375 ED L+ ++ Q NSE++E + CPICK G+L +N I C+ ++L Sbjct: 120 EDDYLAALVSQNMCLNSEQEESQIWCPICKKGELMENHRHIDCNMCDMQL 169
>tr|A5ALM6|A5ALM6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004631 PE=4 SV=1 Length = 262
Score = 62.8 bits (151), Expect = 8e-09 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Frame = +1
Query: 4 DEIDRLRQRTNG---EAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIAMQNILYDD 171 DE+ R R E P + + D M+WEY+ S + EE+M+ +Q + Y+D Sbjct: 87 DELQRFRTSALSGCSEIPTSTAKVDEDMLWEYDGLHTASHF---ECEEVMLELQRMFYED 143
Query: 172 LRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAGKLQQNQH 342 +R R+ E ED + E L+ ++ E+ CPICK GKL+QN H Sbjct: 144 IRMNQTHREE----------EDEDYLDPAIFENLRLEDDKGCKEIWCPICKKGKLRQNNH 193
Query: 343 LIFCSCGHLRL 375 LI+C+ L L Sbjct: 194 LIYCTLCELGL 204
>tr|B4FC79|B4FC79_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 240
Score = 59.7 bits (143), Expect = 7e-08 Identities = 35/124 (28%), Positives = 72/124 (58%) Frame = +1
Query: 4 DEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRTE 183 DE+++L+Q +N E + D +IWEY+ A + + E++++ M+ ++ +D+R E Sbjct: 64 DEVEKLKQ-SNTENEDQEMD---VIWEYQGLHAAKPAEIES-EDILLEMERLVCEDIREE 118
Query: 184 NEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVICPICKAGKLQQNQHLIFCSCG 363 ++ L+E E + + M L ++ +E ++ CP+CK G L++ ++LI+C+ Sbjct: 119 VIRKQLEALDE-EDAYLAQSVLDHMQLNDIEAAETAKLWCPVCKQGDLRETRNLIYCTLC 177
Query: 364 HLRL 375 +LRL Sbjct: 178 NLRL 181
>tr|A7SU16|A7SU16_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g174335 PE=4 SV=1 Length = 245
Score = 53.9 bits (128), Expect = 4e-06 Identities = 29/92 (31%), Positives = 52/92 (56%) Frame = +1
Query: 88 EPSEALSQLKNDDYEELMIAMQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLE 267 EPSE D E++ M D+++ E + + ++L +++++ + E+ +L +E Sbjct: 104 EPSEEA------DINEILSVM-----DEIQQELMEEEKLILAQYDENQKFEEESLCAAIE 152
Query: 268 QLQNSEEDEVICPICKAGKLQQNQHLIFCSCG 363 L+ D+VICP+CK L QN+ +IFC CG Sbjct: 153 GLKT---DDVICPVCKRNPLHQNKQVIFCCCG 181
>tr|B5X5V6|B5X5V6_SALSA RPA-interacting protein A OS=Salmo salar GN=RIPA PE=2 SV=1 Length = 227
Score = 52.8 bits (125), Expect = 9e-06 Identities = 27/96 (28%), Positives = 53/96 (55%) Frame = +1
Query: 76 IWEYEPSEALSQLKNDDYEELMIAMQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALS 255 +W + E + + + Y+EL + +++++ E ++ ++EE+EKS + E++ L+ Sbjct: 79 LWRRDGMEEMYSVMKE-YDELAV------FEEIQQELMSQELSIIEEYEKSMQFEEQYLN 131
Query: 256 MMLEQLQNSEEDEVICPICKAGKLQQNQHLIFCSCG 363 ++E L+ E ++ICPIC L N H C CG Sbjct: 132 SVVEGLEG--ERQIICPICHVHNLAVNSHFTSCPCG 165
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