BP920571
Clone id YMU001_000138_F10
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATCTCCACAAGCTGCTGCCGAAGAAACTGTTCTCCCGAGAAGCATGTCATTATTCTCAA
GTATCCACTGAACCTGCAATATCAAGTATTCCTCAAATGCCCTTCCCAAAATGCGCAAAG
CTTCAGAGTAAAGAGCAGCTGCATCAGGGCGAACAAGCAACTTTGTTAACAGAATTTCTG
TGAAGTTTTTCTCTGACTCGGAAGAGTTTTGGCCCTTCCTCAACAGCTGATCTTGCAGCT
TGAACAGCTTCCGCAGCCACTGACATATTATGACCCTCAAGTTTTTCCATAAAAACTTGC
TCATTAAGCAATAATCTCAGCTCCAACCATTGCCAATGAAATGTAGCAGGATGCATATCA
TCTAGAACTTGCACCAACTCCTCCACAAGGCTAGCTTGATTTTTCATGCTACAACGACCT
TGTGGAAACTCTTCAAGAGGACCTGTACGCAGCTTGCAATCAAGAACAGAATGTAGAAAT
AACCTTGGACGAGATGGCACCATGGAGGACACTTTTGTAAGAAAATCTGCACCCTTGCTA
TCTAGCAAACATGTATGTTCATATTCTTTAAGGAGTAAATACAACGTT
■■Homology search results ■■ -
sp_hit_id O19104
Definition sp|O19104|FANCC_BOVIN Fanconi anemia group C protein homolog OS=Bos taurus
Align length 66
Score (bit) 33.9
E-value 0.62
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920571|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_F10.
(588 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O19104|FANCC_BOVIN Fanconi anemia group C protein homolog OS=... 34 0.62
sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-c... 33 1.1
sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laev... 31 5.2
sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protei... 30 6.8

>sp|O19104|FANCC_BOVIN Fanconi anemia group C protein homolog OS=Bos
taurus GN=FANCC PE=2 SV=1
Length = 567

Score = 33.9 bits (76), Expect = 0.62
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3

Query: 271 IICQWLRKLFKLQDQLLRKGQNSSESEKNFTEIL--LTKLLVRPDAAALYSEALRILGRA 98
I+C WLR L L++ +L + SE+N + K +RP+AAA + R++
Sbjct: 239 ILCLWLRHLPSLENTMLHLLEKLISSERNSLRRIKCFMKDSLRPEAAACHPAIFRVVDEI 298

Query: 97 FEEYLI 80
F L+
Sbjct: 299 FRSALL 304


>sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization
domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1
SV=1
Length = 953

Score = 33.1 bits (74), Expect = 1.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = -3

Query: 262 QWLRKLFKLQDQLLRKGQ----NSSESEKNFTEILLTKLLVRPDAAALYSEALRIL 107
Q L+ L+ +Q+Q+ KG ++ +S TEI L L++P+ A +Y + RI+
Sbjct: 896 QTLKHLWLIQNQITAKGTAQLADALQSNTGITEICLNGNLIKPEEAKVYEDEKRII 951


>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis
GN=fam62b-A PE=2 SV=1
Length = 872

Score = 30.8 bits (68), Expect = 5.2
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -3

Query: 286 KNLRVIICQWLRKLFKLQDQLLRKGQNSSESEKNFTEILLTKLLVRPDAAALYSE 122
K++ ICQ++ KLF+ + +G N+ S NFT+I + +R + +Y+E
Sbjct: 131 KHMWPYICQFIEKLFRETIEPAVRGANAHLSTFNFTKIDMGSQPLRINGVKVYTE 185


>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein
C3H5.08c OS=Schizosaccharomyces pombe GN=SPAC3H5.08c
PE=1 SV=1
Length = 855

Score = 30.4 bits (67), Expect = 6.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2

Query: 551 CLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEE 429
CL + +DF+T ++ P R FL LDCKLR ++E
Sbjct: 342 CLCCFEHSDFVTSIA-FHPKDDRFFLSGSLDCKLRLWSIKE 381


tr_hit_id A9TE29
Definition tr|A9TE29|A9TE29_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 102
Score (bit) 97.4
E-value 3.0e-40
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920571|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_F10.
(588 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TE29|A9TE29_PHYPA Predicted protein OS=Physcomitrella paten... 97 3e-40
tr|O23057|O23057_ARATH A_IG005I10.24 protein (Putative uncharact... 87 1e-30
tr|A7PZG6|A7PZG6_VITVI Chromosome chr15 scaffold_40, whole genom... 89 3e-29
tr|A3BMV5|A3BMV5_ORYSJ Putative uncharacterized protein OS=Oryza... 77 3e-27
tr|B8B5A7|B8B5A7_ORYSI Putative uncharacterized protein OS=Oryza... 77 3e-27
tr|Q2HTJ2|Q2HTJ2_MEDTR 2-oxo acid dehydrogenase, lipoyl-binding ... 76 5e-25
tr|Q8RWP8|Q8RWP8_ARATH Putative uncharacterized protein (Fragmen... 69 2e-24
tr|Q8RWP7|Q8RWP7_ARATH Putative uncharacterized protein (Fragmen... 69 2e-24
tr|Q8RUK8|Q8RUK8_ARATH Putative uncharacterized protein (Fragmen... 69 2e-24
tr|Q8RUK3|Q8RUK3_ARATH Putative uncharacterized protein (Fragmen... 69 2e-24
tr|Q94LW0|Q94LW0_ORYSJ Putative uncharacterized protein OSJNBa00... 65 4e-22
tr|Q7XCF0|Q7XCF0_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 65 4e-22
tr|A3C736|A3C736_ORYSJ Putative uncharacterized protein OS=Oryza... 65 4e-22
tr|Q0IVW3|Q0IVW3_ORYSJ Os10g0550100 protein (Fragment) OS=Oryza ... 65 4e-22
tr|B4AL19|B4AL19_BACPU Glutamate-5-semialdehyde dehydrogenase OS... 34 5.3
tr|Q28XW0|Q28XW0_DROPS GA15366 OS=Drosophila pseudoobscura pseud... 33 9.1

>tr|A9TE29|A9TE29_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_194126 PE=4 SV=1
Length = 2120

Score = 97.4 bits (241), Expect(2) = 3e-40
Identities = 50/102 (49%), Positives = 70/102 (68%)
Frame = -2

Query: 566 EYEHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEEFPQGRCSMKNQASL 387
E ++ +LD +G + KVS+MVP R RLFLH++LD K+ E+ +G+ N
Sbjct: 1484 EVKYAAMLDLQGFELYKKVSAMVPLRARLFLHALLDRKMP----EDDMRGQNHTLNGPGQ 1539

Query: 386 VEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNMS 261
+E++VQVLD++ ATFHWQW+ELRLLLNEQV +EKL+ H S
Sbjct: 1540 IEQVVQVLDELQAATFHWQWVELRLLLNEQVILEKLKIHPQS 1581



Score = 91.3 bits (225), Expect(2) = 3e-40
Identities = 42/60 (70%), Positives = 51/60 (85%)
Frame = -3

Query: 211 QNSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
Q E EK FTE++LT+LLVRPDAAALYSE + +LG+A E+YLIL V+W+LENNDMLLGR
Sbjct: 1596 QQLDECEKTFTEVVLTRLLVRPDAAALYSEVVHLLGKALEDYLILHVKWVLENNDMLLGR 1655


>tr|O23057|O23057_ARATH A_IG005I10.24 protein (Putative
uncharacterized protein AT4g00450) (F5I10.24 protein)
OS=Arabidopsis thaliana GN=A_IG005I10.24 PE=2 SV=1
Length = 2124

Score = 87.4 bits (215), Expect(2) = 1e-30
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Frame = -2

Query: 560 EHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEEFPQGRCSMKNQAS--- 390
E + +S G D K + P R RLFL+S++DCK+ + ++Q +
Sbjct: 1507 EFASVFESHGLDMHLKSVAFAPLRARLFLNSLIDCKVPSSGYSHEGVSEAKNRHQGNGTK 1566

Query: 389 LVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNM 264
LV++LV VLD + PA FHWQW+ELRLLLNEQ EKLE H+M
Sbjct: 1567 LVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALAEKLENHDM 1608



Score = 68.9 bits (167), Expect(2) = 1e-30
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -3

Query: 208 NSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
++SE+EKNF +ILLT+LLVRPDA L+SE + + GR+ E+ ++ Q +W L D+L GR
Sbjct: 1625 DASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGR 1683


>tr|A7PZG6|A7PZG6_VITVI Chromosome chr15 scaffold_40, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026872001
PE=4 SV=1
Length = 2135

Score = 88.6 bits (218), Expect(2) = 3e-29
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 9/109 (8%)
Frame = -2

Query: 560 EHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEE----FPQGRCSMK--- 402
E +L+ G D + + VP R RLFL++++DCK+ L + + G K
Sbjct: 1495 EFAAMLELNGPDLHLRAMAFVPLRARLFLNAIIDCKMPNTSLTQDDVSWVSGHAESKVPY 1554

Query: 401 --NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNMS 261
N+ L+++LV +LD + PA FHWQW+ELRLLLNEQ +EK++ H++S
Sbjct: 1555 AENETKLLDKLVHILDTLQPAKFHWQWVELRLLLNEQALVEKVDNHDVS 1603



Score = 63.2 bits (152), Expect(2) = 3e-29
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -3

Query: 205 SSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
+SE+E NF I+LT+LL RP AAAL+SE + + GR+ E+ +LQ +W L D+L GR
Sbjct: 1620 ASENENNFILIILTRLLARPYAAALFSEVVHLFGRSLEDSTLLQAKWFLVGQDVLFGR 1677


>tr|A3BMV5|A3BMV5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_024377 PE=4 SV=1
Length = 2178

Score = 76.6 bits (187), Expect(2) = 3e-27
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Frame = -2

Query: 560 EHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEEFPQGRCSMKN------ 399
E +L+ D +K + +P R RLFL+S++DCK L + G C+ ++
Sbjct: 1548 EFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGD---GSCASESGEAKES 1604

Query: 398 QASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNMS 261
+ L + L+Q+LD + PA FHWQW+ELR LL+EQ +EK+ N S
Sbjct: 1605 ELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTS 1650



Score = 68.2 bits (165), Expect(2) = 3e-27
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = -3

Query: 202 SESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
S+SEK FTEI+L++LL RPDAA LYSE + +LG+ +E L++ V+W+L+ D LLGR
Sbjct: 1668 SDSEKGFTEIILSRLLARPDAAPLYSELVHLLGK-LQESLVVDVKWLLQGQDALLGR 1723


>tr|B8B5A7|B8B5A7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27117 PE=4 SV=1
Length = 2094

Score = 76.6 bits (187), Expect(2) = 3e-27
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Frame = -2

Query: 560 EHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKLRTGPLEEFPQGRCSMKN------ 399
E +L+ D +K + +P R RLFL+S++DCK L + G C+ ++
Sbjct: 1460 EFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGD---GSCASESGEAKES 1516

Query: 398 QASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNMS 261
+ L + L+Q+LD + PA FHWQW+ELR LL+EQ +EK+ N S
Sbjct: 1517 ELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTS 1562



Score = 68.2 bits (165), Expect(2) = 3e-27
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = -3

Query: 202 SESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
S+SEK FTEI+L++LL RPDAA LYSE + +LG+ +E L++ V+W+L+ D LLGR
Sbjct: 1580 SDSEKGFTEIILSRLLARPDAAPLYSELVHLLGK-LQESLVVDVKWLLQGQDALLGR 1635


>tr|Q2HTJ2|Q2HTJ2_MEDTR 2-oxo acid dehydrogenase, lipoyl-binding site
OS=Medicago truncatula GN=MtrDRAFT_AC150440g19v2 PE=4
SV=1
Length = 2270

Score = 75.9 bits (185), Expect(2) = 5e-25
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Frame = -2

Query: 566 EYEHTCLLDSKGADFLTKVSSMVPSRPRLFLHSVLDCKL------RTGPLEEFPQGRCSM 405
+ E L+ G+D ++ VP R RLFL++++D K+ + G + G +
Sbjct: 1640 DLEFATFLELNGSDMRLNSTAFVPLRARLFLNAIIDRKMPQSIYTKDGGSQISGHGESKI 1699

Query: 404 K---NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNMS 261
+ +++ L ++LV VL+ + PA FHWQW+ELRLLLNE +EKL+ H+MS
Sbjct: 1700 QFTDSKSKLEDKLVDVLEALQPAKFHWQWVELRLLLNELSLIEKLQTHDMS 1750



Score = 61.6 bits (148), Expect(2) = 5e-25
Identities = 26/58 (44%), Positives = 43/58 (74%)
Frame = -3

Query: 205 SSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
+SE+E +F +I+LT+LLVRPDAA L+SE + + G++ + ++ Q +W L D+L+GR
Sbjct: 1767 ASENENDFIQIILTRLLVRPDAAPLFSELIHLFGKSLVDSMLSQAKWFLVGQDVLVGR 1824


>tr|Q8RWP8|Q8RWP8_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 184

Score = 68.9 bits (167), Expect(2) = 2e-24
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -3

Query: 208 NSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
++SE+EKNF +ILLT+LLVRPDA L+SE + + GR+ E+ ++ Q +W L D+L GR
Sbjct: 83 DASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGR 141



Score = 67.0 bits (162), Expect(2) = 2e-24
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = -2

Query: 401 NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNM 264
N LV++LV VLD + PA FHWQW+ELRLLLNEQ EKLE H+M
Sbjct: 21 NGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALAEKLENHDM 66


>tr|Q8RWP7|Q8RWP7_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 183

Score = 68.9 bits (167), Expect(2) = 2e-24
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -3

Query: 208 NSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
++SE+EKNF +ILLT+LLVRPDA L+SE + + GR+ E+ ++ Q +W L D+L GR
Sbjct: 82 DASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGR 140



Score = 67.0 bits (162), Expect(2) = 2e-24
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = -2

Query: 401 NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNM 264
N LV++LV VLD + PA FHWQW+ELRLLLNEQ EKLE H+M
Sbjct: 20 NGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALAEKLENHDM 65


>tr|Q8RUK8|Q8RUK8_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 183

Score = 68.9 bits (167), Expect(2) = 2e-24
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -3

Query: 208 NSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
++SE+EKNF +ILLT+LLVRPDA L+SE + + GR+ E+ ++ Q +W L D+L GR
Sbjct: 82 DASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGR 140



Score = 67.0 bits (162), Expect(2) = 2e-24
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = -2

Query: 401 NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNM 264
N LV++LV VLD + PA FHWQW+ELRLLLNEQ EKLE H+M
Sbjct: 20 NGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALAEKLENHDM 65


>tr|Q8RUK3|Q8RUK3_ARATH Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 183

Score = 68.9 bits (167), Expect(2) = 2e-24
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -3

Query: 208 NSSESEKNFTEILLTKLLVRPDAAALYSEALRILGRAFEEYLILQVQWILENNDMLLGR 32
++SE+EKNF +ILLT+LLVRPDA L+SE + + GR+ E+ ++ Q +W L D+L GR
Sbjct: 82 DASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGR 140



Score = 67.0 bits (162), Expect(2) = 2e-24
Identities = 30/46 (65%), Positives = 35/46 (76%)
Frame = -2

Query: 401 NQASLVEELVQVLDDMHPATFHWQWLELRLLLNEQVFMEKLEGHNM 264
N LV++LV VLD + PA FHWQW+ELRLLLNEQ EKLE H+M
Sbjct: 20 NGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALAEKLENHDM 65