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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920565
Clone id YMU001_000138_F04
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTGTAGAACATACACTATCTCAAGTCAGTTCATTTACATGGTTAGTTATTGAC
TGGGGACAAAAATCTGCTTTTCGGAGTTCCAATCTATCACTTTGCGGATTGTAGCGCAGG
AGATAATCTTCATCTGCATAGAAAAACTAATATACAGTTGAACTCAGCGATTAGGTACAG
TTCAATGGGAATGGCTTTGACAAACCCTTATATCAAACATATAGAAAACATCTGATATCT
TCCACAGGTTAACCTATGTTCTTTCCCACTTGCAAGTCCACATGGGATGGCCTTCCCAAT
GTTGTATAACATACACTATCTCAAGTCAGTTCATTTACATGGTTAGTTATTGACTGGGGA
CAAAAATCTGCTTTTCGGAGTTCCAATCTATCACTTTGCGGATTGTAGCGCAG
■■Homology search results ■■ -
sp_hit_id Q8RY73
Definition sp|Q8RY73|DOM3Z_ARATH Protein Dom3z homolog, chloroplastic OS=Arabidopsis thaliana
Align length 34
Score (bit) 36.6
E-value 0.04
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920565|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_F04.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RY73|DOM3Z_ARATH Protein Dom3z homolog, chloroplastic OS=Ar...    37   0.040
sp|Q9P797|NU131_SCHPO Nucleoporin nup131 OS=Schizosaccharomyces ...    31   2.2  
sp|Q8WHW9|YCF2_PSINU Protein ycf2 OS=Psilotum nudum GN=ycf2 PE=3...    30   4.9  
sp|P0C213|TAX_HTL1F Protein Tax-1 OS=Human T-cell leukemia virus...    30   4.9  
sp|P14079|TAX_HTL1C Protein Tax-1 OS=Human T-cell leukemia virus...    30   4.9  
sp|P03409|TAX_HTL1A Protein Tax-1 OS=Human T-cell leukemia virus...    30   4.9  
sp|Q2UE23|CBP4_ASPOR Assembly factor cbp4 OS=Aspergillus oryzae ...    29   6.5  
sp|Q0CGN5|CBP4_ASPTN Assembly factor cbp4 OS=Aspergillus terreus...    29   8.4  

>sp|Q8RY73|DOM3Z_ARATH Protein Dom3z homolog, chloroplastic
           OS=Arabidopsis thaliana GN=At4g17620 PE=2 SV=1
          Length = 544

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           +EDY+L++     RLEL +A  CP +ITNHV+ L
Sbjct: 500 NEDYILQFVHPFMRLELLQAQSCPDAITNHVHLL 533



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 389 RLELRKADFCPQSITNHVNEL 327
           RLEL +A  CP +ITNHV+ L
Sbjct: 513 RLELLQAQSCPDAITNHVHLL 533


>sp|Q9P797|NU131_SCHPO Nucleoporin nup131 OS=Schizosaccharomyces
           pombe GN=nup131 PE=1 SV=1
          Length = 1142

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +2

Query: 68  KNLLFGVPIYHFADCSAGDNLHLHRKTNIQLNS-AIRYSSMGMALTNPYIKHIENI*YLP 244
           KNL+   P   F   S+G  LHL+ K +   +S  +R    G+ + N  +    +I    
Sbjct: 183 KNLVSAEPAGFFLTLSSGRLLHLNLKDSDGNSSIQVRILFPGLHIPNCLLSLYNSIFAFT 242

Query: 245 QVNLCSFPLASPHGMAFPMLYNIHYLKSVHLHG*LLTGDKNLLFGVPIY 391
              +      S  G    ++Y++H   ++ +     TGD +LL G  IY
Sbjct: 243 SGRVIPIRCGSIKGPGERLVYSMHSGSTLRIWEIFGTGDHHLLRGFDIY 291


>sp|Q8WHW9|YCF2_PSINU Protein ycf2 OS=Psilotum nudum GN=ycf2 PE=3 SV=1
          Length = 2313

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 122  DNLHLHRKTNIQLNSAIRYSSMGMALTNPYIKHIENI*YLPQVNLCSFPLA 274
            D  H H  +N  LNS I+  S  + L   Y++++ NI    + NL +FP++
Sbjct: 1510 DGFHFHLNSNNMLNSNIKEFSSKLGLN--YLQYLANI---YKTNLSNFPIS 1555


>sp|P0C213|TAX_HTL1F Protein Tax-1 OS=Human T-cell leukemia virus 1
           (isolate Zaire EL subtype B) GN=tax PE=1 SV=1
          Length = 353

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 68  KNLLFGVPIYHFADCSAGD 124
           ++LLFG P+Y F DC  GD
Sbjct: 9   QSLLFGYPVYVFGDCVQGD 27


>sp|P14079|TAX_HTL1C Protein Tax-1 OS=Human T-cell leukemia virus 1
           (isolate Caribbea HS-35 subtype A) GN=tax PE=1 SV=2
          Length = 353

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 68  KNLLFGVPIYHFADCSAGD 124
           ++LLFG P+Y F DC  GD
Sbjct: 9   QSLLFGYPVYVFGDCVQGD 27


>sp|P03409|TAX_HTL1A Protein Tax-1 OS=Human T-cell leukemia virus 1
           (strain Japan ATK-1 subtype A) GN=tax PE=1 SV=2
          Length = 353

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 68  KNLLFGVPIYHFADCSAGD 124
           ++LLFG P+Y F DC  GD
Sbjct: 9   QSLLFGYPVYVFGDCVQGD 27


>sp|Q2UE23|CBP4_ASPOR Assembly factor cbp4 OS=Aspergillus oryzae
           GN=cbp4 PE=3 SV=2
          Length = 116

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           DE+   RYNP+  R  L + D   Q   ++VN+L
Sbjct: 32  DEELFKRYNPELQRRSLEEGDRRAQEFDDYVNKL 65


>sp|Q0CGN5|CBP4_ASPTN Assembly factor cbp4 OS=Aspergillus terreus
           (strain NIH 2624) GN=cbp4 PE=3 SV=1
          Length = 116

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           DE+   RYNP+  R  L + D   Q   ++VN L
Sbjct: 32  DEELFKRYNPELQRRSLEEGDRRAQEFDDYVNRL 65
tr_hit_id A9S661
Definition tr|A9S661|A9S661_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920565|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_F04.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S661|A9S661_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.058
tr|A7R7F7|A7R7F7_VITVI Chromosome undetermined scaffold_1742, wh...    39   0.13 
tr|Q6PS56|Q6PS56_9CARY Glycine-rich protein (Fragment) OS=Haloxy...    38   0.29 
tr|Q2V3H7|Q2V3H7_ARATH Uncharacterized protein At4g17620.2 OS=Ar...    37   0.64 
tr|Q0WV80|Q0WV80_ARATH Putative uncharacterized protein At4g1762...    37   0.64 
tr|Q2A993|Q2A993_BRAOL Glycine-rich protein-related OS=Brassica ...    35   1.4  
tr|A7PCI4|A7PCI4_VITVI Chromosome chr2 scaffold_11, whole genome...    34   3.2  
tr|B8AXZ8|B8AXZ8_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3B3Q2|A3B3Q2_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q00P88|Q00P88_9CLOS Heat shock protein 70-like protein OS=Ras...    33   7.1  

>tr|A9S661|A9S661_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181621 PE=4 SV=1
          Length = 454

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = -1

Query: 131 EDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           EDY LR+N  ++RLEL KA+ CP +I++H++ L
Sbjct: 416 EDYTLRFNRHANRLELVKANSCPDTISSHMDLL 448



 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = -1

Query: 413 LRYNPQSDRLELRKADFCPQSITNHVNEL 327
           LR+N  ++RLEL KA+ CP +I++H++ L
Sbjct: 420 LRFNRHANRLELVKANSCPDTISSHMDLL 448


>tr|A7R7F7|A7R7F7_VITVI Chromosome undetermined scaffold_1742, whole
            genome shotgun sequence (Fragment) OS=Vitis vinifera
            GN=GSVIVT00009978001 PE=4 SV=1
          Length = 2867

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = -1

Query: 134  DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
            +EDY+L++ P   RLEL +A  CP +I+ HV +L
Sbjct: 2834 NEDYILQFAPPFTRLELLQAQSCPDAISGHVQQL 2867


>tr|Q6PS56|Q6PS56_9CARY Glycine-rich protein (Fragment) OS=Haloxylon
           ammodendron GN=GRP1 PE=2 SV=1
          Length = 113

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           +EDY+L++ P   RLEL +A+ CP  I +HV EL
Sbjct: 75  NEDYILQFAPPFARLELLQANSCPDVIADHVLEL 108


>tr|Q2V3H7|Q2V3H7_ARATH Uncharacterized protein At4g17620.2
           OS=Arabidopsis thaliana GN=At4g17620 PE=4 SV=1
          Length = 544

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           +EDY+L++     RLEL +A  CP +ITNHV+ L
Sbjct: 500 NEDYILQFVHPFMRLELLQAQSCPDAITNHVHLL 533


>tr|Q0WV80|Q0WV80_ARATH Putative uncharacterized protein At4g17620
           OS=Arabidopsis thaliana GN=At4g17620 PE=2 SV=1
          Length = 544

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           +EDY+L++     RLEL +A  CP +ITNHV+ L
Sbjct: 500 NEDYILQFVHPFMRLELLQAQSCPDAITNHVHLL 533


>tr|Q2A993|Q2A993_BRAOL Glycine-rich protein-related OS=Brassica
           oleracea GN=40.t00068 PE=4 SV=1
          Length = 526

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITNHVNEL 33
           +EDY L++     RLEL +A  CP +ITNHV+ L
Sbjct: 482 NEDYTLQFVHPFMRLELLQAQSCPDAITNHVHLL 515


>tr|A7PCI4|A7PCI4_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015876001
           PE=4 SV=1
          Length = 526

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADFCPQSITN 48
           +EDY+L++ P   RLEL +A  CP +I+N
Sbjct: 469 NEDYILQFAPPFTRLELLQAQSCPDAISN 497


>tr|B8AXZ8|B8AXZ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19840 PE=4 SV=1
          Length = 531

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADF-CPQSITNHVNELT 30
           +EDY+L++    +RLEL +A   CP +IT+HV +L+
Sbjct: 492 NEDYILQFVHPFNRLELLRAQSPCPDAITHHVEQLS 527


>tr|A3B3Q2|A3B3Q2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017674 PE=4 SV=1
          Length = 467

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = -1

Query: 134 DEDYLLRYNPQSDRLELRKADF-CPQSITNHVNELT 30
           +EDY+L++    +RLEL +A   CP +IT+HV +L+
Sbjct: 428 NEDYILQFVHPFNRLELLRAQSPCPDAITHHVEQLS 463


>tr|Q00P88|Q00P88_9CLOS Heat shock protein 70-like protein
           OS=Raspberry mottle virus PE=3 SV=1
          Length = 598

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
 Frame = +2

Query: 29  KSVHLHG*LLTGDKNLLFGVPIYHFADCSAGDNLHLHRKTNIQLNSAIRYSSMGMALTNP 208
           KS H +  L  GD NL           CS  D ++         ++ +  SS+G+  T P
Sbjct: 420 KSAHYNARLFEGDYNL-----------CSYNDLIY---------SAEVSISSLGVQSTTP 459

Query: 209 YIKHIENI*YLPQVNLCSFPLASPHGMAFPMLYNIHY-------LKSVHLHG*LLTGDKN 367
              ++     +  V   SF +  P G++ P+    HY       LKSV  H  L + DK+
Sbjct: 460 ISVNLVLTTKIDSVGKISFSIKGPSGVSVPVQGKSHYDFSTLSPLKSVVAH--LSSTDKD 517

Query: 368 L 370
           L
Sbjct: 518 L 518