BP920484
Clone id YMU001_000137_F04
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTGATGGAGCCCCGTGCTTGGCCACGGGATTAATGTTAAGCACTGTTCTGTTCGTAAAGA
CCGTTCCATCAACTTTCATTGCCTTGCGGCTATCCGATGCTGATGCAGTGACATGAAGCG
GGAGGTGGTTTGCACGGCAGGAACTACCAAAGCTCACGTTGGTGGAGGATGTAGGGAAAG
GAACGCAAGGTAGCTGGGTGAGGGAATTCAAGAGGGAAGAGCTCTGGCAAGCACTTCGAG
CTGCCATTGCCAAAATGTGGCTTCGGAGGTGAGAAGCCGCAGAGGGAGGAGGAGGAAGAA
GAGGCCCTAGCCTCTGCACGTGCGATGGTTGGGTGATCGAGTCGAATAGCCCACCGTGCT
GATTCACGCGATTGAGCCTTCTCGCTGTCGAGAGCTGCAGTGGAGGAGCTGCCGCTGCGT
GTGCGCCACCACGCGAGTCCGCGCTACAGACGGATGCGAGGTGATGCAGCCGGCAACGAC
GAGCCAGAAGCGGCAGCTGTGGCTGCGCGAAGACAAAGCAGCGTGCTGACAAATGGCGGG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920484|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F04.
(540 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A5CUP1
Definition tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Align length 82
Score (bit) 33.5
E-value 7.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920484|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F04.
(540 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Claviba... 33 7.3

>tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein
OS=Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382) GN=CMM_2744 PE=4 SV=1
Length = 237

Score = 33.5 bits (75), Expect = 7.3
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +3

Query: 12 PCLATGLMLSTVLFVKTVPSTFIALRLSDADAVT*SGRWFARQELPKLTLVEDVGKGTQG 191
P + GL L V +SDA ++ R ARQ L + L +V + G
Sbjct: 119 PLVVAGLSLGAVDLYSRTARDISTQEVSDATTLS---RIVARQVLRRALLAAEVRQEETG 175

Query: 192 SWVREFKREELWQALRAAIAKM 257
W + R E+ QA +A+M
Sbjct: 176 GWEGRYSRREVHQATGMVVAQM 197