BP920479 |
Clone id |
YMU001_000137_E11 |
Library |
YMU01 |
Length |
545 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_E11. |
Accession |
BP920479 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3869Contig1 |
Sequence |
TTTTTTTTTTTTTTTTTTTTGCAAAACTCACAAAACGTGAGTAAGAAATGTATTATAAAC CGCAAATTCTACAAAGCTTGCCATGCTCAAATCGAGCCATGGCACCCATAGATACCAGAA GCTTCCGAAATCCTTACATCAACATACAACAGCTGATAAGGGGAGCCACCCTGCAAAGTA AAATAAGGCTGATATGGGAGCCACCCAAGGAAAAGGACCTACCACATCCGTCACCTTGTC CACCAAGTCATAGACCGAATCGTCGAAGAAGAAGAGCCAGAGGCCCAGAGCGAGCCATCT CGGCCGCCACTGACAGGCGAGCATATGCCACATACTAGCCCACCACCAATGAGGATCACC GGATCCAAGATCAAAAACTTGATTCCTGCGGCCCACCACCTCCAACAAGAAATAAGAACC AGTAACCTGTCCACTGTAGGCCAGTAGCGCCAGCCATAGCTACTCGGCCCGAACCACACC TCCTCGACCAAGCTCCACTCGAGCAGCAGGCCAGCAGGGCCGTTCCAAACCACAGCCGGC CTTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q15N95 |
Definition |
sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) |
Align length |
47 |
Score (bit) |
33.1 |
E-value |
0.82 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920479|Adiantum capillus-veneris mRNA, clone: YMU001_000137_E11. (525 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1 OS=Pseudoalte... 33 0.82 sp|Q6SZ61|CD2_MACFA T-cell surface antigen CD2 OS=Macaca fascicu... 27 1.7 sp|P06729|CD2_HUMAN T-cell surface antigen CD2 OS=Homo sapiens G... 26 3.6 sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 OS=Sacch... 31 4.1 sp|O14343|KLP5_SCHPO Kinesin-like protein 5 OS=Schizosaccharomyc... 31 4.1 sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabido... 30 5.3 sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein ... 30 5.4 sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associ... 30 7.0 sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associ... 30 7.0 sp|A1JRR3|GHRA_YERE8 Glyoxylate/hydroxypyruvate reductase A OS=Y... 30 7.1 sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN... 30 7.1 sp|P45019|Y1073_HAEIN UPF0382 membrane protein HI1073 OS=Haemoph... 30 9.1
>sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=nhaA1 PE=3 SV=1 Length = 472
Score = 33.1 bits (74), Expect = 0.82 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3
Query: 460 GVVRAE*LWLALLAYSGQVTGSYFLLEVVGRRNQVFDLGSGDPHWWW 320 G+ E + L L Y+G G F L V+G R +F L G WW+ Sbjct: 193 GLFYTENIHLTSLMYAGLTLGGLFALNVLGFRRPIFYLVGGILLWWF 239
>sp|Q6SZ61|CD2_MACFA T-cell surface antigen CD2 OS=Macaca fascicularis GN=CD2 PE=2 SV=1 Length = 351
Score = 27.3 bits (59), Expect(2) = 1.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1
Query: 373 PPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAP 477 PPPP +++Q P H RP+ P + +P AP Sbjct: 282 PPPPPGHRSQAPSH-RPLPPGHRVQHQPQKRPPAP 315
Score = 23.1 bits (48), Expect(2) = 1.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3
Query: 459 PPRPSSTRAAGQQGRSKPQP 518 PP PS T+ Q+G P+P Sbjct: 312 PPAPSGTQVHQQKGPPLPRP 331
>sp|P06729|CD2_HUMAN T-cell surface antigen CD2 OS=Homo sapiens GN=CD2 PE=1 SV=2 Length = 351
Score = 26.2 bits (56), Expect(2) = 3.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1
Query: 373 PPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAP 477 PPPP +++Q P H RP P + +P AP Sbjct: 282 PPPPPGHRSQAPSH-RPPPPGHRVQHQPQKRPPAP 315
Score = 23.1 bits (48), Expect(2) = 3.6 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3
Query: 459 PPRPSSTRAAGQQGRSKPQP 518 PP PS T+ Q+G P+P Sbjct: 312 PPAPSGTQVHQQKGPPLPRP 331
>sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 OS=Saccharomyces cerevisiae GN=MSB1 PE=1 SV=1 Length = 1137
Score = 30.8 bits (68), Expect = 4.1 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1
Query: 376 PPPTRNKNQ*------PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHSRP 522 PP +++NQ P H PV + P+L PL QQ R PNH P Sbjct: 925 PPELKSRNQRADASPIPQHMVPVKQGV-----PNLPSNVPLYQQMERMNPNHQHP 974
>sp|O14343|KLP5_SCHPO Kinesin-like protein 5 OS=Schizosaccharomyces pombe GN=klp5 PE=1 SV=1 Length = 883
Score = 30.8 bits (68), Expect = 4.1 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +1
Query: 391 NKNQ*PVHCR---PVAPAIATRPEPHLLDQAPLEQQ 489 NKNQ V PV+P + +PEP LL ++PLE++ Sbjct: 741 NKNQIDVEINLTSPVSPMLEDKPEPGLLIKSPLEKK 776
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2 Length = 743
Score = 30.4 bits (67), Expect = 5.3 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = +3
Query: 42 ANSTKLAMLKSSHGTHRYQKLPKSLHQHTTADKGSHPAK*NKADMGATQGKGP 200 ANST+LA + S G R P L + ++ D+GS+ N D G +GP Sbjct: 616 ANSTELASVASPKGVGRVNGEPSQLVEASSGDEGSY----NPHDDGDPMEEGP 664
>sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae GN=NAB3 PE=1 SV=1 Length = 802
Score = 30.4 bits (67), Expect = 5.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1
Query: 358 LDSCGPPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQ 489 ++S PPP + N N + +P AP ++ +P P Q +QQ Sbjct: 735 MNSSSPPPMSTNYNGQNISAKPSAPPMSHQPPPPQQQQQQQQQQ 778
>sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associated protein OS=Mus musculus GN=Trrap PE=1 SV=2 Length = 2565
Score = 30.0 bits (66), Expect = 7.0 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -3
Query: 280 RWLALGLWLFFFDD---SVYDLVDKVTDVVGPFPWVAPISAL 164 ++LA LWL FDD ++ D VDK V P W+A I L Sbjct: 1885 KYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQL 1926
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3 Length = 3859
Score = 30.0 bits (66), Expect = 7.0 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -3
Query: 280 RWLALGLWLFFFDD---SVYDLVDKVTDVVGPFPWVAPISAL 164 ++LA LWL FDD ++ D VDK V P W+A I L Sbjct: 3197 KYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQL 3238
>sp|A1JRR3|GHRA_YERE8 Glyoxylate/hydroxypyruvate reductase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrA PE=3 SV=1 Length = 313
Score = 30.0 bits (66), Expect = 7.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1
Query: 106 RNPYINIQQLIRGATLQSKIRLIWEPPKE 192 R P NI+Q RG T + L+W+PP+E Sbjct: 22 RLPTANIRQWRRGDTQPADYALVWQPPQE 50
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3RGJ5 |
Definition |
tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich domain:Glycoside hydrolase, family 2, sugar binding OS=Xylella fastidiosa Dixon |
Align length |
56 |
Score (bit) |
35.8 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920479|Adiantum capillus-veneris mRNA, clone: YMU001_000137_E11. (525 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2, immunoglobu... 36 1.4 tr|Q5ZWZ1|Q5ZWZ1_LEGPH GTP-binding protein Era OS=Legionella pne... 35 3.0 tr|Q5X6G1|Q5X6G1_LEGPA Putative uncharacterized protein OS=Legio... 35 3.0 tr|Q5WXW6|Q5WXW6_LEGPL Putative uncharacterized protein OS=Legio... 35 3.0 tr|A5IFW9|A5IFW9_LEGPC GTP-binding protein Era OS=Legionella pne... 35 3.0 tr|Q8F1N2|Q8F1N2_LEPIN Predicted hydrolase or acyltransferase, a... 34 5.1 tr|A7MGE1|A7MGE1_ENTS8 Putative uncharacterized protein OS=Enter... 34 5.1 tr|Q00Z12|Q00Z12_OSTTA SET domain-containing protein (ISS) OS=Os... 34 5.1 tr|B4J772|B4J772_DROGR GH20090 OS=Drosophila grimshawi GN=GH2009... 34 5.2 tr|B2HF48|B2HF48_MYCMM Polyprenol-monophosphomannose synthase, P... 33 8.6 tr|A0PQN1|A0PQN1_MYCUA N-term polyprenol-monophosphomannose synt... 33 8.6 tr|Q1JWK1|Q1JWK1_DESAC TonB-dependent receptor OS=Desulfuromonas... 33 8.8 tr|A6ZP33|A6ZP33_YEAS7 Multicopy suppressor of a budding defect ... 33 8.8 tr|Q2GU83|Q2GU83_CHAGB Putative uncharacterized protein OS=Chaet... 30 9.1
>tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich domain:Glycoside hydrolase, family 2, sugar binding OS=Xylella fastidiosa Dixon GN=XfasaDRAFT_1473 PE=4 SV=1 Length = 1281
Score = 35.8 bits (81), Expect = 1.4 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +1
Query: 352 QKLDSCGPPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHSR 519 Q+ PPP TR H RP P + RP P LLD+ P Q + P+ R Sbjct: 235 QRTTGITPPPATR-------HARPQHPRVQRRPIPRLLDRPPNTPQQHTSHPHRRR 283
>tr|Q5ZWZ1|Q5ZWZ1_LEGPH GTP-binding protein Era OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=era PE=3 SV=1 Length = 311
Score = 34.7 bits (78), Expect = 3.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3
Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131 V + VDK+TD PW+ IS + FA +PLSA Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169
>tr|Q5X6G1|Q5X6G1_LEGPA Putative uncharacterized protein OS=Legionella pneumophila (strain Paris) GN=lpp1004 PE=3 SV=1 Length = 311
Score = 34.7 bits (78), Expect = 3.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3
Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131 V + VDK+TD PW+ IS + FA +PLSA Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169
>tr|Q5WXW6|Q5WXW6_LEGPL Putative uncharacterized protein OS=Legionella pneumophila (strain Lens) GN=lpl0973 PE=3 SV=1 Length = 311
Score = 34.7 bits (78), Expect = 3.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3
Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131 V + VDK+TD PW+ IS + FA +PLSA Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169
>tr|A5IFW9|A5IFW9_LEGPC GTP-binding protein Era OS=Legionella pneumophila (strain Corby) GN=era PE=3 SV=1 Length = 311
Score = 34.7 bits (78), Expect = 3.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3
Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131 V + VDK+TD PW+ IS + FA +PLSA Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169
>tr|Q8F1N2|Q8F1N2_LEPIN Predicted hydrolase or acyltransferase, alpha/beta hydrolase superfamily OS=Leptospira interrogans GN=LA3100 PE=4 SV=1 Length = 309
Score = 33.9 bits (76), Expect = 5.1 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = -3
Query: 307 HMLACQWRPRWLALGLWLFFFDDSVYDLVDKVTDVVGPFPWVAP---ISALFYF--AGWL 143 H++ W ALG WLF D V T + GP PW+A I LF F + W Sbjct: 109 HLVGHDWGA---ALG-WLFISDFEYSKYVSSFTAISGPHPWLAGKRIIDDLFSFDLSNW- 163
Query: 142 PLSAVVC*CKDFG-SFWYLW 86 S V+ D G FWY+W Sbjct: 164 --SKVI----DQGFRFWYIW 177
>tr|A7MGE1|A7MGE1_ENTS8 Putative uncharacterized protein OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_04314 PE=4 SV=1 Length = 153
Score = 33.9 bits (76), Expect = 5.1 Identities = 18/34 (52%), Positives = 20/34 (58%) Frame = -3
Query: 181 APISALFYFAGWLPLSAVVC*CKDFGSFWYLWVP 80 AP ALF FAGWLP + V KD W LW+P Sbjct: 100 APRGALF-FAGWLPSAYVWLLAKDVFFVWPLWLP 132
>tr|Q00Z12|Q00Z12_OSTTA SET domain-containing protein (ISS) OS=Ostreococcus tauri GN=Ot11g01420 PE=4 SV=1 Length = 1744
Score = 33.9 bits (76), Expect = 5.1 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = -2
Query: 524 EGRLWFGTALLACCSSGAWSRRCGSGRVAMAGATGLQWTGYWF----LFLV--GGGG 372 +G +++G+A A C GA + S RV +AG T + G WF L +V GGGG Sbjct: 802 DGNMFYGSAWEAHCGRGATRKYKASVRVYLAGPTPQMFIGRWFDHVGLKVVDRGGGG 858
>tr|B4J772|B4J772_DROGR GH20090 OS=Drosophila grimshawi GN=GH20090 PE=4 SV=1 Length = 1191
Score = 33.9 bits (76), Expect = 5.2 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1
Query: 376 PPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHS 516 PPP N N P R AP +A +PH LD L +Q SR V + S Sbjct: 1119 PPPPPNSNYGPAGHRVSAPPLANILDPHGLDSHLLYEQNSRRVKSIS 1165
>tr|B2HF48|B2HF48_MYCMM Polyprenol-monophosphomannose synthase, Ppm1A OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ppm1A PE=4 SV=1 Length = 704
Score = 33.1 bits (74), Expect = 8.6 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Frame = -3
Query: 331 HWWWASMWHMLACQW---RPRWL---ALGLWLFFFDDSVYDLVDKVTDVVGPFPWVAPIS 170 +WWWA++ + W P LG F L+ + +VGP PW+ + Sbjct: 142 NWWWAAIVSVALLTWVLMHPTTTPVGGLGYGFVFGLACFVPLLPWIGTLVGPVPWLVLAT 201
Query: 169 ALFYFAGWLPLSAVV 125 F G LSAVV Sbjct: 202 TSALFPGLFGLSAVV 216
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