BP920454
Clone id YMU001_000137_C07
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTGTCCTGAAATTTAATGTTGACCGTTTTCATTACAGCTCTAGCA
TAACTCAAAATCAAGCCCTTGCTACATCCTTGCTATGCACATGACCTCAATATATATTTG
ATGAGTTGCACATGCAGTTACTCTCACAGTCCTCTTTTTGTACGGACATCCAGCAATTAA
GGATCCTTAAAATGTTGTTATGTCGGCCACCAACCAAAAACATGAAGAAAAAGCAACATG
AGAGGGTTTAGGCTGATGCCAAGCCTAATGGGTTGCTGAAAATGTAGGTTTCCACTGGCG
AAATGAGAGCAAATGAGATCAGAATTTCGATTAGTTTCCAAAATATGGAGAGAAGAAGAT
GAATTTTTACATCGTAGGAAACAATCGCAAGAAACCTTCAAGATCTACCCGCTCAAGACC
TGTTATTCAAGACCTTCAAGATCTATCCCCGACAAGTCTCGATCTCAAGACCTGTTATTC
AAGAAGGAACTGGGACAACCAATCTACCACACCTGAC
■■Homology search results ■■ -
sp_hit_id Q8K3V3
Definition sp|Q8K3V3|GPR56_RAT G-protein coupled receptor 56 OS=Rattus norvegicus
Align length 59
Score (bit) 32.7
E-value 0.96
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920454|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C07.
(500 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8K3V3|GPR56_RAT G-protein coupled receptor 56 OS=Rattus norv... 33 0.96
sp|Q8K209|GPR56_MOUSE G-protein coupled receptor 56 OS=Mus muscu... 32 1.3
sp|Q9JM98|WDR8_MOUSE WD repeat-containing protein 8 OS=Mus muscu... 30 4.8
sp|Q50DM8|GPR56_MACMU G-protein coupled receptor 56 OS=Macaca mu... 30 8.2
sp|Q96JN2|CC136_HUMAN Coiled-coil domain-containing protein 136 ... 30 8.2

>sp|Q8K3V3|GPR56_RAT G-protein coupled receptor 56 OS=Rattus
norvegicus GN=Gpr56 PE=2 SV=1
Length = 687

Score = 32.7 bits (73), Expect = 0.96
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2

Query: 241 HQPKPSHVAFSSCFWLVADITTF*GSLIA-GCPYKKRTVRVTACATHQIYIEVMCIARM 68
HQP+P +V FW+ ++ GS + GC R + + H Y V+ ++ M
Sbjct: 335 HQPQPKNVTLQCVFWVEDPASSSTGSWSSEGCETVSRDTQTSCLCNHLTYFAVLMVSSM 393


>sp|Q8K209|GPR56_MOUSE G-protein coupled receptor 56 OS=Mus musculus
GN=Gpr56 PE=2 SV=1
Length = 687

Score = 32.3 bits (72), Expect = 1.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2

Query: 241 HQPKPSHVAFSSCFWLVADITTF*GS-LIAGCPYKKRTVRVTACATHQIYIEVMCIA 74
HQP+P +V FW+ ++ GS AGC R + + H Y V+ ++
Sbjct: 335 HQPQPKNVTLQCVFWVEDPASSSTGSWSSAGCETVSRDTQTSCLCNHLTYFAVLMVS 391


>sp|Q9JM98|WDR8_MOUSE WD repeat-containing protein 8 OS=Mus musculus
GN=Wdr8 PE=2 SV=1
Length = 462

Score = 30.4 bits (67), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1

Query: 380 RFLAIVSYDVKIHLLLSIFWKLIEILISFALISPVETYIF 261
+FLAI SYD K+ LL + WK+I A I+ +T ++
Sbjct: 236 QFLAIGSYDGKVRLLNHVTWKMITEFGHPATINNPKTVVY 275


>sp|Q50DM8|GPR56_MACMU G-protein coupled receptor 56 OS=Macaca
mulatta GN=GPR56 PE=2 SV=1
Length = 687

Score = 29.6 bits (65), Expect = 8.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2

Query: 241 HQPKPSHVAFSSCFWLVADITTF*GS-LIAGCPYKKRTVRVTACATHQIYIEVMCIA 74
HQP+P +V FW+ + G AGC +R + + H Y V+ ++
Sbjct: 335 HQPQPKNVTLQCVFWVEDPTLSNPGRWSSAGCETVRRETQTSCFCNHLTYFAVLMVS 391


>sp|Q96JN2|CC136_HUMAN Coiled-coil domain-containing protein 136
OS=Homo sapiens GN=CCDC136 PE=1 SV=2
Length = 1154

Score = 29.6 bits (65), Expect = 8.2
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1

Query: 22 RFHYSSSITQNQALATSLLCT*PQY--IFDELHMQLLSQSSFCTDIQQLRILKMLL 183
RF S S+TQN+ L + L +Y DE + L Q T+++QL+++K L
Sbjct: 354 RFQTSHSVTQNEELKSRLCTLQKKYDTSQDEQNELLKMQLQLQTELRQLKVMKSTL 409


tr_hit_id B6ENL6
Definition tr|B6ENL6|B6ENL6_ALISL Membrane associated receptor OS=Aliivibrio salmonicida (strain LFI1238)
Align length 74
Score (bit) 33.9
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920454|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C07.
(500 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6ENL6|B6ENL6_ALISL Membrane associated receptor OS=Aliivibri... 34 4.4
tr|Q215G9|Q215G9_RHOPB Proton-translocating NADH-quinone oxidore... 33 7.4
tr|B8M583|B8M583_9EURO Efflux pump antibiotic resistance protein... 33 9.7

>tr|B6ENL6|B6ENL6_ALISL Membrane associated receptor OS=Aliivibrio
salmonicida (strain LFI1238) GN=VSAL_I1824 PE=4 SV=1
Length = 482

Score = 33.9 bits (76), Expect = 4.4
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2

Query: 269 RFPLAK*EQMRSEFRLVSKIWREEDEFLHRRKQSQETFKIYPLKTCYSRPSRSIPDKSRS 448
+FPL + L+S W ++ E K S+E KI+P + Y+ P DK ++
Sbjct: 55 QFPLFANSLLSRSQSLISLQWMQKVEEKDIEKHSKEVKKIFPSFSIYTVPQ----DKPKT 110

Query: 449 QDLLFKKELGQPIY 490
D +FK +PIY
Sbjct: 111 YDYVFKNH--EPIY 122


>tr|Q215G9|Q215G9_RHOPB Proton-translocating NADH-quinone
oxidoreductase, chain L OS=Rhodopseudomonas palustris
(strain BisB18) GN=RPC_2415 PE=3 SV=1
Length = 688

Score = 33.1 bits (74), Expect = 7.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2

Query: 295 LLSFRQWKPTFSATH*AWHQPKPSHVAFSSCFWLVADITTF-*GSLIAGCPYKK 137
L SF W+ F H H K A S +W++ + GS++AG P+K+
Sbjct: 477 LTSFYSWRLIFKTFHGTPHDQKNYDAAHESPYWMLIPLVVLAAGSILAGFPFKE 530


>tr|B8M583|B8M583_9EURO Efflux pump antibiotic resistance protein,
putative OS=Talaromyces stipitatus ATCC 10500
GN=TSTA_029630 PE=4 SV=1
Length = 562

Score = 32.7 bits (73), Expect = 9.7
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = -1

Query: 365 VSYDVKIHLLLSIFWKLIEILISFALISPVETYIFSNPLGLASA*TLSCCFFFMFLVGGR 186
V+Y ++++F +LI+F LI E S P L T+S FFF F VGG
Sbjct: 267 VTYPWNNGRIIALFVLSGVLLIAFVLIQVWEGETASVPPRLVKKRTMSAGFFFTFCVGGT 326

Query: 185 HNNILRILNCWMSVQK 138
++ L W K
Sbjct: 327 MLLVVYYLPVWFQAIK 342