BP920419 |
Clone id |
YMU001_000136_H03 |
Library |
YMU01 |
Length |
554 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000136_H03. |
Accession |
BP920419 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1240Contig1 |
Sequence |
GCTGAAAAAGCACGATATCCTCTTTATTGCTGATGAGGTGATTTGTGCTTTTGGGAGGCT AGGAGCAATGTTTGGATGTGAAAAGTACAACATCAAACCTGATCTTGTGACAATTGCCAA GGCACTTTCTTCTGGTTATATGCCAATTGGGGCTGTCTTAATGGGCCCACATATTGCAGA AGTTGTTAGCTCACAAAGCAACGAAATGGGATCTTTTGGACATGGTTTTACATACTCTGG GCATCCAGTCCCATGTGCTGTTGCATTGGAAACCCTTAAGATTTACAAGGAAAGAAACAT TGTTGATCATGTGAAAAGCCTTACCCCCTATTTCCAAGAAGGCATGAGGGAGGCTATTGC TGAGAGTCCTGTTATTGAAGAGGTGCGTGGTACAGGGCTTGTTATGGGGGTAGAGTTTAC GAGAAACAAGTCTCCTACTGACCTATTTCCAGCTTCATGGGCTACTGGGACTTATTTTGG AAATCAATGTGCGGAACAAGGTTTGCTAGTGCGAGTCTCAGGAGATACGATTATGATGTC TCCTCCCTTGATGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q53196 |
Definition |
sp|Q53196|Y4UB_RHISN Uncharacterized aminotransferase y4uB OS=Rhizobium sp. (strain NGR234) |
Align length |
186 |
Score (bit) |
152.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920419|Adiantum capillus-veneris mRNA, clone: YMU001_000136_H03. (554 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q53196|Y4UB_RHISN Uncharacterized aminotransferase y4uB OS=Rh... 152 1e-36 sp|Q58696|BIOA_METJA Adenosylmethionine-8-amino-7-oxononanoate a... 119 8e-27 sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate a... 117 5e-26 sp|P53555|BIOA_BACSU Adenosylmethionine-8-amino-7-oxononanoate a... 116 8e-26 sp|P33189|YHXA_BACSU Uncharacterized aminotransferase yhxA OS=Ba... 115 1e-25 sp|O34662|YODT_BACSU Uncharacterized aminotransferase yodT OS=Ba... 112 9e-25 sp|P22805|BIOA_BACSH Adenosylmethionine-8-amino-7-oxononanoate a... 112 2e-24 sp|O94562|YGD3_SCHPO Uncharacterized aminotransferase C1771.03c ... 110 5e-24 sp|P28269|OAPT_PSEPU Omega-amino acid--pyruvate aminotransferase... 107 5e-23 sp|P38021|OAT_BACSU Ornithine aminotransferase OS=Bacillus subti... 102 1e-21 sp|Q07805|OAT_PLAFD Ornithine aminotransferase OS=Plasmodium fal... 102 1e-21 sp|Q6LFH8|OAT_PLAF7 Ornithine aminotransferase OS=Plasmodium fal... 102 1e-21 sp|Q4XWV5|OAT_PLACH Ornithine aminotransferase OS=Plasmodium cha... 102 2e-21 sp|P60299|ARGD2_STAAW Acetylornithine aminotransferase 2 OS=Stap... 100 6e-21 sp|Q6GAW9|ARGD2_STAAS Acetylornithine aminotransferase 2 OS=Stap... 100 6e-21 sp|P60298|ARGD2_STAAN Acetylornithine aminotransferase 2 OS=Stap... 100 6e-21 sp|P60297|ARGD2_STAAM Acetylornithine aminotransferase 2 OS=Stap... 100 6e-21 sp|Q5HHC8|ARGD2_STAAC Acetylornithine aminotransferase 2 OS=Stap... 100 6e-21 sp|Q7RT90|OAT_PLAYO Ornithine aminotransferase OS=Plasmodium yoe... 100 8e-21 sp|Q31WW1|PAT_SHIBS Putrescine aminotransferase OS=Shigella boyd... 99 1e-20 sp|Q8Z3L9|PAT_SALTI Putrescine aminotransferase OS=Salmonella ty... 99 1e-20 sp|Q6GID1|ARGD2_STAAR Acetylornithine aminotransferase 2 OS=Stap... 99 1e-20 sp|Q58131|ARGD_METJA Acetylornithine aminotransferase OS=Methano... 99 2e-20 sp|Q83JJ8|PAT_SHIFL Putrescine aminotransferase OS=Shigella flex... 98 2e-20 sp|Q0T0J2|PAT_SHIF8 Putrescine aminotransferase OS=Shigella flex... 98 2e-20 sp|Q8ZLX7|PAT_SALTY Putrescine aminotransferase OS=Salmonella ty... 98 2e-20 sp|Q57JP1|PAT_SALCH Putrescine aminotransferase OS=Salmonella ch... 98 2e-20 sp|Q1R6Q7|PAT_ECOUT Putrescine aminotransferase OS=Escherichia c... 98 2e-20 sp|P42588|PAT_ECOLI Putrescine aminotransferase OS=Escherichia c... 98 2e-20 sp|Q8FDF5|PAT_ECOL6 Putrescine aminotransferase OS=Escherichia c... 98 2e-20
>sp|Q53196|Y4UB_RHISN Uncharacterized aminotransferase y4uB OS=Rhizobium sp. (strain NGR234) GN=y4uB PE=3 SV=1 Length = 467
Score = 152 bits (383), Expect = 1e-36 Identities = 72/186 (38%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Frame = +2
Query: 2 LKKHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAE 181 LKKHD+L IADEVI FGR G+MFG + Y I+PDL+T+AK L+S Y P+ A ++G + + Sbjct: 251 LKKHDVLLIADEVITGFGRTGSMFGSQHYGIEPDLITVAKGLTSAYFPLSASIVGEKVYK 310
Query: 182 VVSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIA 361 V+ ++ +G+F HG+TYSGHP+ A A L I ++ ++ + + + YFQ ++E A Sbjct: 311 VLEDGADRVGAFSHGYTYSGHPIGAAAANAVLDIVEKEDLPGNAREVGGYFQAQLKEKFA 370
Query: 362 ESPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRV--SGDTIM 535 + P++ EVRG GL+ +EF ++ F G ++GL+ R GD + Sbjct: 371 QLPIVGEVRGVGLMGAIEFVGDRENKKRFDPLLKVGARVSKAARDRGLIARAMPHGDILG 430
Query: 536 MSPPLM 553 +PPL+ Sbjct: 431 FAPPLV 436
>sp|Q58696|BIOA_METJA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Methanocaldococcus jannaschii GN=bioA PE=3 SV=1 Length = 464
Score = 119 bits (299), Expect = 8e-27 Identities = 58/186 (31%), Positives = 106/186 (56%), Gaps = 4/186 (2%) Frame = +2
Query: 5 KKHDILFIADEVICAFGRLGAMFGCEKYNIK----PDLVTIAKALSSGYMPIGAVLMGPH 172 K++D++FI DEV FGR G MF C+ +K PD++ + K L+ GY+P+ A L Sbjct: 257 KENDVIFILDEVATGFGRTGKMFFCDNEELKKLEKPDILCLGKGLTGGYLPLAATLTTDE 316
Query: 173 IAEVVSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMRE 352 I + E HG TY+G+ + C+ AL TL+I+++ N++++++ F + +R+ Sbjct: 317 IYNQFLGEFGESKQLYHGHTYTGNQLLCSAALATLEIFEKENVIENIQPKIKLFHKELRK 376
Query: 353 AIAESPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTI 532 + E + +VRG G ++G+E ++K + +P + G + E+G+ +R G+ I Sbjct: 377 -LKELEHVGDVRGRGFMVGIELVKDKETKEPYPYGYKAGYRVAEKLLEKGIYMRPIGNVI 435
Query: 533 MMSPPL 550 ++ PPL Sbjct: 436 ILVPPL 441
>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Aquifex aeolicus GN=bioA PE=3 SV=1 Length = 453
Score = 117 bits (292), Expect = 5e-26 Identities = 58/183 (31%), Positives = 99/183 (54%) Frame = +2
Query: 5 KKHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEV 184 KK+D L I DEV FGR G MF CE+ + PD + + K ++ GY+P+ A L + Sbjct: 248 KKYDTLMIVDEVATGFGRTGTMFYCEQEGVSPDFMCLGKGITGGYLPLAATLTTDEVFNA 307
Query: 185 VSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAE 364 + E F HG TY+G+ + C+VAL L++++E ++ ++ +E ++E E Sbjct: 308 FLGEFGEAKHFYHGHTYTGNNLACSVALANLEVFEEERTLEKLQPKIKLLKERLQE-FWE 366
Query: 365 SPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTIMMSP 544 + +VR G + G+E ++K + FP TG +C E+G+ +R GD +++ Sbjct: 367 LKHVGDVRQLGFMAGIELVKDKEKGEPFPYGERTGFKVAYKCREKGVFLRPLGDVMVLMM 426
Query: 545 PLM 553 PL+ Sbjct: 427 PLV 429
>sp|P53555|BIOA_BACSU Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Bacillus subtilis GN=bioK PE=3 SV=1 Length = 448
Score = 116 bits (290), Expect = 8e-26 Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 2/182 (1%) Frame = +2
Query: 11 HDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEVVS 190 +D+L I DEV FGR G MF CE N++PDL+ K ++ GY+PI I + Sbjct: 244 YDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFY 303
Query: 191 SQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHV--KSLTPYFQEGMREAIAE 364 + +F HG +Y+G+ + CAVALE L +++ NIV+ V KS +F + + + Sbjct: 304 DDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHF---LLQDLHA 360
Query: 365 SPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTIMMSP 544 P + ++R G + G E R+K + +PA G + E G+L R GD I P Sbjct: 361 LPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP 420
Query: 545 PL 550 PL Sbjct: 421 PL 422
>sp|P33189|YHXA_BACSU Uncharacterized aminotransferase yhxA OS=Bacillus subtilis GN=yhxA PE=3 SV=3 Length = 450
Score = 115 bits (288), Expect = 1e-25 Identities = 61/176 (34%), Positives = 98/176 (55%) Frame = +2
Query: 5 KKHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEV 184 ++H L I DEVIC FGR G FG Y +KPD++T+AK ++S Y+P+ A + I E Sbjct: 245 RRHGALLICDEVICGFGRTGEPFGFMHYGVKPDIITMAKGITSAYLPLSATAVKRDIFEA 304
Query: 185 VSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAE 364 ++ F H T+ G P CA+AL+ L+I ++ ++ + L G +A+ E Sbjct: 305 YQGEA-PYDRFRHVNTFGGSPAACALALKNLQIMEDEQLIQRSRDLGAKLL-GELQALRE 362
Query: 365 SPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTI 532 P + +VRG GL++G+E ++K + PA A C E+GL++ +GDT+ Sbjct: 363 HPAVGDVRGKGLLIGIELVKDKLTKE--PADAAKVNQVVAACKEKGLIIGKNGDTV 416
>sp|O34662|YODT_BACSU Uncharacterized aminotransferase yodT OS=Bacillus subtilis GN=yodT PE=3 SV=1 Length = 444
Score = 112 bits (281), Expect = 9e-25 Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 8/189 (4%) Frame = +2
Query: 5 KKHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEV 184 + HD+LFIADEV+ GR G M E ++ PD+ + K L +GY PI A ++ I E Sbjct: 230 RTHDVLFIADEVMTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIET 289
Query: 185 VSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAE 364 + S + S G TYS HP ALE L+ + ++ + ++ + EA ++ Sbjct: 290 IKQGSGVIMS---GHTYSAHPYSAKAALEVLRYVLKHGLIKQSEKKGAVLKKKLDEAASQ 346
Query: 365 SPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVS-------- 520 S +I EVRG GL++G+EF ++ +FP A ++ ++GL+V S Sbjct: 347 SGIIGEVRGKGLLLGIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKAGIDSGE 406
Query: 521 GDTIMMSPP 547 GD ++++PP Sbjct: 407 GDAVIIAPP 415
>sp|P22805|BIOA_BACSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Bacillus sphaericus GN=bioA PE=3 SV=1 Length = 455
Score = 112 bits (279), Expect = 2e-24 Identities = 55/180 (30%), Positives = 93/180 (51%) Frame = +2
Query: 8 KHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEVV 187 ++D+ IADE+ FGR G +F CE+ NI PD + ++K L+ GY+P+ V+ + + Sbjct: 248 QYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDVYQAF 307
Query: 188 SSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAES 367 M +F H +Y+G+ + C VALE L I++E +D V+ ++ EA ++ Sbjct: 308 YDDYATMKAFLHSHSYTGNTLACRVALEVLAIFEEEQYIDVVQDKGERMRKLALEAFSDL 367
Query: 368 PVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTIMMSPP 547 P + E R G V +E N+ + P+ G + +GLL+R G+ + PP Sbjct: 368 PFVGEYRQVGFVGAIELVANRDTKEPLPSEERIGYQIYKRALAKGLLIRPLGNVLYFMPP 427
>sp|O94562|YGD3_SCHPO Uncharacterized aminotransferase C1771.03c OS=Schizosaccharomyces pombe GN=SPBC1773.03c PE=2 SV=1 Length = 459
Score = 110 bits (275), Expect = 5e-24 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 8/188 (4%) Frame = +2
Query: 8 KHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEVV 187 K+ ++F DEV+ GR G M E+ + PD+ +IAK L GY PI L+G I V Sbjct: 248 KYGVIFYLDEVMSGIGRTGTMHAWEQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVF 307
Query: 188 SSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAES 367 + M F FTY HP+ C+ AL I + ++V+ + Y E + E Sbjct: 308 EQKDAAMAGF---FTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSH 364
Query: 368 PVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLV--------RVSG 523 P + +RG GL G+E ++K+ + FP + G+ E G+ V G Sbjct: 365 PNVGNIRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRG 424
Query: 524 DTIMMSPP 547 D ++++PP Sbjct: 425 DHVLLAPP 432
>sp|P28269|OAPT_PSEPU Omega-amino acid--pyruvate aminotransferase OS=Pseudomonas putida PE=1 SV=1 Length = 449
Score = 107 bits (266), Expect = 5e-23 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 7/186 (3%) Frame = +2
Query: 8 KHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEVV 187 +H+IL + DEVI FGR G+MFG + + + PDL+ IAK +++G +P+GAV+ I + Sbjct: 251 QHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTF 310
Query: 188 SSQSNE--MGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIA 361 +Q F HG+TYS HPV CA L L + ++ N+V V + P+F++ + Sbjct: 311 MNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKG 370
Query: 362 ESPVIEEVRGTGLVMGVEFTRNKS-----PTDLFPASWATGTYFGNQCAEQGLLVRVSGD 526 VI ++R GL ++ P + A W G Y VR GD Sbjct: 371 AKNVI-DIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFY-----------VRFGGD 418
Query: 527 TIMMSP 544 T+ P Sbjct: 419 TLQFGP 424
>sp|P38021|OAT_BACSU Ornithine aminotransferase OS=Bacillus subtilis GN=rocD PE=2 SV=2 Length = 401
Score = 102 bits (255), Expect = 1e-21 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 1/184 (0%) Frame = +2
Query: 5 KKHDILFIADEVICAFGRLGAMFGCEKYNIKPDLVTIAKALSSGYMPIGAVLMGPHIAEV 184 K+ ++LFIADE+ GR G F C+ I PD+ + KAL G PI + I V Sbjct: 220 KEENVLFIADEIQTGLGRTGKTFACDWDGIVPDMYILGKALGGGVFPISCIAADREILGV 279
Query: 185 VSSQSNEMGSFGHGFTYSGHPVPCAVALETLKIYKERNIVDHVKSLTPYFQEGMREAIAE 364 + S HG T+ G+P+ CAV++ +L++ ++ + D L YF+ + + Sbjct: 280 FNPGS-------HGSTFGGNPLACAVSIASLEVLEDEKLADRSLELGEYFKSELES--ID 330
Query: 365 SPVIEEVRGTGLVMGVEFTRNKSPTDLFPASWATGTYFGNQCAEQGLLVRVSGDTIM-MS 541 SPVI+EVRG GL +GVE T P + + E+GLL + + DT++ + Sbjct: 331 SPVIKEVRGRGLFIGVELTEAARP-------------YCERLKEEGLLCKETHDTVIRFA 377
Query: 542 PPLM 553 PPL+ Sbjct: 378 PPLI 381
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84P52 |
Definition |
tr|Q84P52|Q84P52_SOLLC Gamma aminobutyrate transaminase isoform3 OS=Solanum lycopersicum |
Align length |
182 |
Score (bit) |
275.0 |
E-value |
1.0e-72 |
Report |
|