BP920408 |
Clone id |
YMU001_000136_G04 |
Library |
YMU01 |
Length |
572 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000136_G04. |
Accession |
BP920408 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1355Contig1 |
Sequence |
GGGCTCTGCTTTTTATGGTCTGAAACCAATTGTGGAGTTTATGACTTTCAATTTTGCCAT GCAGGCAATTGATCACATTATCAACTCTGCTGCAAAGACGAACTATATGTCTGCGGGGCA AATCTCGGTCCCCATTGTATTTAGAGGCCCAAATGGAGCTGCTGCTGGTGTCGCTGCTCA GCATTCACAGTGCTTTGCTGCATGGTATGGTTCATGTCCAGGGCTCAAAGTTCTCACTCC TTACTCAGCAGAGGATGCACGCGGGTTGATGAAAGCAGCAATTCGGGATCCTGATCCAGT GGTTTTTCTAGAAAATGAGTTATTATATGGAGAATCATTCCCTGTGTCAGCTGAAGTTCT TGATCCAAGTTTTGTTCTCCCGATTGGAAAAGCTAAGGTTGAACGTGTGGGGTCTGATGT AACTGTGACAGCTTTTTCCAAAATGGTTGGGTATGCTCTAAAGGCTGCAGAGCTTTTGGA AAAGGATGGTATCAATGTTGAGGTTATAAACTTGCGGTCAATTAGGCCACTGGACAGAGA AACTATCAACCAATCTGTTAGAAAGACTAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52904 |
Definition |
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum |
Align length |
190 |
Score (bit) |
331.0 |
E-value |
2.0e-90 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920408|Adiantum capillus-veneris mRNA, clone: YMU001_000136_G04. (572 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit b... 331 2e-90 sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component subunit... 317 2e-86 sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit... 273 4e-73 sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit... 261 2e-69 sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit... 260 3e-69 sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit... 260 4e-69 sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component subunit b... 259 9e-69 sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit... 256 4e-68 sp|Q5RE79|ODPB_PONAB Pyruvate dehydrogenase E1 component subunit... 255 1e-67 sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit... 255 1e-67 sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit... 251 1e-66 sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component subunit... 249 9e-66 sp|P26269|ODPB_ASCSU Pyruvate dehydrogenase E1 component subunit... 239 5e-63 sp|O66113|ODPB_ZYMMO Pyruvate dehydrogenase E1 component subunit... 238 2e-62 sp|Q1RJX3|OPDB_RICBR Pyruvate dehydrogenase E1 component subunit... 235 1e-61 sp|Q4UKQ7|OPDB_RICFE Pyruvate dehydrogenase E1 component subunit... 234 2e-61 sp|Q92IS2|ODPB_RICCN Pyruvate dehydrogenase E1 component subunit... 234 2e-61 sp|Q9ZDR3|ODPB_RICPR Pyruvate dehydrogenase E1 component subunit... 229 7e-60 sp|Q68XA8|OPDB_RICTY Pyruvate dehydrogenase E1 component subunit... 228 2e-59 sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta... 162 1e-39 sp|Q85FX1|ODPB_CYAME Pyruvate dehydrogenase E1 component subunit... 158 2e-38 sp|P35488|ODPB_ACHLA Pyruvate dehydrogenase E1 component subunit... 153 7e-37 sp|P51266|ODPB_PORPU Pyruvate dehydrogenase E1 component subunit... 150 6e-36 sp|P27746|ACOB_RALEH Acetoin:2,6-dichlorophenolindophenol oxidor... 148 2e-35 sp|Q6B8T1|ODPB_GRATL Pyruvate dehydrogenase E1 component subunit... 146 6e-35 sp|Q1XDM1|ODPB_PORYE Pyruvate dehydrogenase E1 component subunit... 146 8e-35 sp|Q9TLS3|ODPB_CYACA Pyruvate dehydrogenase E1 component subunit... 146 8e-35 sp|P21874|ODPB_BACST Pyruvate dehydrogenase E1 component subunit... 145 1e-34 sp|Q8MA03|ODPB_CHAGL Pyruvate dehydrogenase E1 component subunit... 145 1e-34 sp|O34591|ACOB_BACSU Acetoin:2,6-dichlorophenolindophenol oxidor... 144 4e-34
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1 Length = 359
Score = 331 bits (848), Expect = 2e-90 Identities = 163/190 (85%), Positives = 178/190 (93%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A+YGLKP+VEFMTFNF+MQAIDHIINSAAK+NYMSAGQISVPIVFRG NG AAGV AQ Sbjct: 91 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQ 150
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HS C+A+WYGSCPGLKVL P+SAEDARGL+KAAIRDPDPVVFLENELLYGESFPVSAEVL Sbjct: 151 HSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVL 210
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 D SF LPIGKAK+ER G DVT+TAFSKMVG+ALKAAE+LEK+GI+ EVINLRSIRPLDR Sbjct: 211 DSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRP 270
Query: 542 TINQSVRKTN 571 TIN SVRKTN Sbjct: 271 TINASVRKTN 280
>sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2 Length = 363
Score = 317 bits (813), Expect = 2e-86 Identities = 156/190 (82%), Positives = 172/190 (90%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A+ GLKP+VEFMTFNF+MQAIDHIINSAAK+NYMSAGQI+VPIVFRGPNGAAAGV AQ Sbjct: 101 GAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQ 160
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQC+AAWY S PGLKVL PYSAEDARGL+KAAIRDPDPVVFLENELLYGESFP+S E L Sbjct: 161 HSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEAL 220
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 D SF LPIGKAK+ER G DVT+ FSKMVG+ALKAAE L ++GI+ EVINLRSIRPLDR Sbjct: 221 DSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRA 280
Query: 542 TINQSVRKTN 571 TIN SVRKT+ Sbjct: 281 TINASVRKTS 290
>sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2 Length = 352
Score = 273 bits (698), Expect = 4e-73 Identities = 134/190 (70%), Positives = 161/190 (84%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+AF GL+PI EFMTFNF+MQAID IINSAAKT YMSAG++ VPIVFRGPNGAAAGVAAQ Sbjct: 90 GAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQ 149
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ F+AWY CPGLKV+ PYSAEDA+GL+KAAIRD +PVVFLENE+LYG+SFPV EVL Sbjct: 150 HSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVL 209
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 FV+PIGKAK+ER G VT+ ++S+ V ++L+AA+ LE G++ EVINLRS+RP D E Sbjct: 210 SDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFE 269
Query: 542 TINQSVRKTN 571 +I QSV KT+ Sbjct: 270 SIRQSVHKTH 279
>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2 Length = 359
Score = 261 bits (666), Expect = 2e-69 Identities = 128/190 (67%), Positives = 156/190 (82%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G SVPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+S+EDA+GL+K+AIRD +PVV LENEL+YG F + +E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ VT+ A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQSVRKTN 571 TI SV KTN Sbjct: 278 TIEGSVMKTN 287
>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2 Length = 366
Score = 260 bits (665), Expect = 3e-69 Identities = 129/191 (67%), Positives = 158/191 (82%), Gaps = 1/191 (0%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GLKPIVEFM+FNF+MQAIDH++NSAAKT+YMS G +VFRGPNGAA GV AQ Sbjct: 104 GAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQ 163
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ F+ WYGS PGLKVL PYSAEDARGL+KAAIRDP+PVVFLENELLYGESF +S E L Sbjct: 164 HSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEAL 223
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKD-GINVEVINLRSIRPLDR 538 P F LP KAK+ER G+D+++ +++ V ++L+AAE+L+K G++ EVINLRSIRPLD Sbjct: 224 SPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDT 282
Query: 539 ETINQSVRKTN 571 E I ++V+KTN Sbjct: 283 EAIIKTVKKTN 293
>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1 Length = 359
Score = 260 bits (664), Expect = 4e-69 Identities = 127/190 (66%), Positives = 156/190 (82%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMSAG VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG +F + AE Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQSVRKTN 571 I SV KTN Sbjct: 278 AIEASVMKTN 287
>sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2 Length = 359
Score = 259 bits (661), Expect = 9e-69 Identities = 126/190 (66%), Positives = 155/190 (81%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMSAG VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG +F + E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQSVRKTN 571 I SV KTN Sbjct: 278 AIEASVMKTN 287
>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1 Length = 366
Score = 256 bits (655), Expect = 4e-68 Identities = 132/191 (69%), Positives = 153/191 (80%), Gaps = 1/191 (0%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+AF GL+PI EFMTFNF+MQAIDHI+NSAA+T YMS G + PIVFRGPNG AA VAAQ Sbjct: 103 GAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQ 162
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ FA WYGS PGLKV++PYSAEDARGL+KAAIRDP+PVV LENE+LYG++FP+S E L Sbjct: 163 HSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEAL 222
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKD-GINVEVINLRSIRPLDR 538 FVLP G AKVER G D+T+ S V AL+AA+ L+ D G+ EVINLRSIRPLD Sbjct: 223 SEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDI 282
Query: 539 ETINQSVRKTN 571 TI SV+KTN Sbjct: 283 NTIAASVKKTN 293
>sp|Q5RE79|ODPB_PONAB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1 Length = 359
Score = 255 bits (651), Expect = 1e-67 Identities = 123/190 (64%), Positives = 153/190 (80%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG F E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV + S+ VG+ L+AA +L K+G+ EVIN+R+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDME 277
Query: 542 TINQSVRKTN 571 TI SV KTN Sbjct: 278 TIEASVMKTN 287
>sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3 Length = 359
Score = 255 bits (651), Expect = 1e-67 Identities = 123/190 (64%), Positives = 153/190 (80%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG F E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV + S+ VG+ L+AA +L K+G+ EVIN+R+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDME 277
Query: 542 TINQSVRKTN 571 TI SV KTN Sbjct: 278 TIEASVMKTN 287
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LPU2 |
Definition |
tr|B8LPU2|B8LPU2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
190 |
Score (bit) |
337.0 |
E-value |
2.0e-91 |
Report |
|