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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920330
Clone id YMU001_000135_G08
Library
Length 313
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGGATTGAAGAGTCTGGTGAGCTCCCGGAAAAGGGGCACTATAAATACGCTTGGCAATG
GAAGCATAGTCGCTTCCATGGCTGTGGAGTGTATGAAGTAAATGGCCGTGCTATCTGGGG
TAAATTTTACTTTGGAGAGTTGCTACCTGATCCTGATGAGTGCACTATTGATTACACTGC
TTTACATGCTGGTCTTGCAGAAGTGGCAGCTGCAAAAGCCAGAATGTTTGCAAACAAGCC
AGATGGAATGGTGCGGCAAGTTAAAGGTCCATTTACGGACCCCTCACATCCCTACATGTA
TGAAGAGGAGGAC
■■Homology search results ■■ -
sp_hit_id P26703
Definition sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever virus (isolate Portugal/Lis 57/1957)
Align length 19
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920330|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_G08.
         (313 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever vi...    31   2.2  
sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever viru...    30   3.7  
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c...    30   3.7  
sp|P26702|V117_ASFL5 Protein LIS 117 OS=African swine fever viru...    30   4.9  
sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC OS=Agrob...    30   4.9  
sp|Q8RY22|DEGP7_ARATH Protease Do-like 7 OS=Arabidopsis thaliana...    29   8.3  

>sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS119-1 PE=3 SV=1
          Length = 119

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 Y*LHCFTCWSCRSGSCKSQ 222
           Y  HC  CW CR+G CK++
Sbjct: 48  YGKHCDFCWECRNGICKNK 66


>sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS290 PE=3 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 Y*LHCFTCWSCRSGSCKSQ 222
           Y  HC  CW+C+ G CK++
Sbjct: 208 YAKHCDFCWTCKDGMCKNK 226


>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c
           PE=2 SV=2
          Length = 705

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 280 VRKWTFNLPHHSIWLVCK 227
           VR W    PHH +WL CK
Sbjct: 190 VRSWVTRSPHHVVWLNCK 207


>sp|P26702|V117_ASFL5 Protein LIS 117 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS117 PE=3 SV=1
          Length = 117

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 Y*LHCFTCWSCRSGSCKSQ 222
           Y  HC  CW C++G CK++
Sbjct: 48  YGKHCDFCWDCKNGICKNK 66


>sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=thiC PE=3 SV=2
          Length = 607

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 ANKPDGMVRQVKGPFTDPSHPYMYE 304
           A +P   V    GP+TDPSHP + E
Sbjct: 46  AGEPPVTVYDSSGPYTDPSHPVLIE 70


>sp|Q8RY22|DEGP7_ARATH Protease Do-like 7 OS=Arabidopsis thaliana
            GN=DEGP7 PE=2 SV=1
          Length = 1097

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
 Frame = +2

Query: 17   GELPEKGHYKYAWQWKH-SRFHGCGVY------EVNGR 109
            G LPE+GH  Y  +W H S  H  G+Y      EVNG+
Sbjct: 993  GFLPEEGHGVYVTRWCHGSPAHRYGLYALQWIVEVNGK 1030
tr_hit_id A9TKY9
Definition tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 104
Score (bit) 156.0
E-value 6.0e-37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920330|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_G08.
         (313 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella paten...   156   6e-37
tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana...   138   2e-31
tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome...   132   7e-30
tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromos...   104   2e-21
tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.1  
tr|Q4CU33|Q4CU33_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.1  
tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.3  
tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.3  

>tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170651 PE=4 SV=1
          Length = 860

 Score =  156 bits (394), Expect = 6e-37
 Identities = 67/104 (64%), Positives = 76/104 (73%)
 Frame = +2

Query: 2   WIEESGELPEKGHYKYAWQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTX 181
           W++  GE PEKGHYKYA QWKHSR HGCGVYE+NGR  WGKFYFGE+LPD +EC    + 
Sbjct: 333 WVKYFGEKPEKGHYKYAGQWKHSRMHGCGVYELNGRQTWGKFYFGEMLPDEEECDDKLSA 392

Query: 182 XXXXXXXXXXXXXRMFANKPDGMVRQVKGPFTDPSHPYMYEEED 313
                        RMF NKPDGMVR++KGPF+DP HPYMYEEED
Sbjct: 393 MHASLAEVAAAKARMFVNKPDGMVREMKGPFSDPQHPYMYEEED 436


>tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana
           GN=At5g22640 PE=2 SV=1
          Length = 871

 Score =  138 bits (347), Expect = 2e-31
 Identities = 58/104 (55%), Positives = 71/104 (68%)
 Frame = +2

Query: 2   WIEESGELPEKGHYKYAWQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTX 181
           W+ + GE PEKG Y+YA QWKHSR HGCGVYEVN R ++G+FYFGELL +   CT+D   
Sbjct: 322 WVTQFGEKPEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICA 381

Query: 182 XXXXXXXXXXXXXRMFANKPDGMVRQVKGPFTDPSHPYMYEEED 313
                        RMF NKPDGM+R+ +GP+ DP HPY YEE+D
Sbjct: 382 LHSGLAEVAAAKARMFVNKPDGMIREERGPYGDPQHPYFYEEDD 425


>tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022091001
           PE=4 SV=1
          Length = 845

 Score =  132 bits (333), Expect = 7e-30
 Identities = 59/104 (56%), Positives = 70/104 (67%)
 Frame = +2

Query: 2   WIEESGELPEKGHYKYAWQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTX 181
           WI++ G  PEKG Y+YA QWKH R HGCGVYEVN R I+G+FYFGELL D   C  + + 
Sbjct: 311 WIKQFGRKPEKGRYRYAGQWKHGRMHGCGVYEVNERTIYGRFYFGELLEDFYGCDENTSA 370

Query: 182 XXXXXXXXXXXXXRMFANKPDGMVRQVKGPFTDPSHPYMYEEED 313
                        RMF NKPDGMVR+ +GP++DP HPY YEEED
Sbjct: 371 LHSGIAEVAAAKARMFINKPDGMVREERGPYSDPQHPYFYEEED 414


>tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MDJ22 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 942

 Score =  104 bits (260), Expect = 2e-21
 Identities = 45/84 (53%), Positives = 54/84 (64%)
 Frame = +2

Query: 2   WIEESGELPEKGHYKYAWQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTX 181
           W+ + GE PEKG Y+YA QWKHSR HGCGVYEVN R ++G+FYFGELL +   CT+D   
Sbjct: 322 WVTQFGEKPEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICA 381

Query: 182 XXXXXXXXXXXXXRMFANKPDGMV 253
                        RMF NKPDG +
Sbjct: 382 LHSGLAEVAAAKARMFVNKPDGSI 405



 Score = 37.7 bits (86), Expect = 0.29
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 248 MVRQVKGPFTDPSHPYMYEEED 313
           ++R+ +GP+ DP HPY YEE+D
Sbjct: 475 LIREERGPYGDPQHPYFYEEDD 496


>tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506229.20 PE=4 SV=1
          Length = 171

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 47  YAWQWKHSRFHGCGVY-EVNGRAIWGKFYFG 136
           Y   W+ +R HG G Y +VNG+   GKFY G
Sbjct: 106 YEGAWRANRMHGLGTYTDVNGKVWNGKFYNG 136


>tr|Q4CU33|Q4CU33_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511573.30 PE=4 SV=1
          Length = 171

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 47  YAWQWKHSRFHGCGVY-EVNGRAIWGKFYFG 136
           Y   W+ +R HG G Y +VNG+   GKFY G
Sbjct: 106 YEGAWRANRMHGLGTYTDVNGKVWNGKFYNG 136


>tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053504741.50 PE=4 SV=1
          Length = 175

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44  KYAWQWKHSRFHGCGVY-EVNGRAIWGKFYFG 136
           +Y  QW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164


>tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511625.20 PE=4 SV=1
          Length = 175

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44  KYAWQWKHSRFHGCGVY-EVNGRAIWGKFYFG 136
           +Y  QW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164