BP920317
Clone id YMU001_000135_F06
Library
Length 423
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000135_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAATGCTGTTGAGCAGGCGTACGCGACCAGGCTCTTAGCTGGTCGCCACCGTAAAGACTT
CATGGCTCCACACCCCCTGAGTTTAATCTCAGGAGCCAGCACCCTCGCTTTTGTTGCACT
TACAGCTGGCCCAAAATCAAGACACACCAACGGCCAGCCCCTAGAGTTTCTGGCTACGCC
CTTCACACTCCACCAAAGCCCAGAGACTATGTCCTCCACTCTCTACCTTGGCTTGCTACA
GCCTGCGCTGTTACGGCCCTGCCTTGAAGTTTCCCCACACACACATACAATGTCTTGCTA
GCCTGCTGTGCTGCATAACTCCCCTCTCTCCCGTAGCTTGTTGCAACCCAACGAGCTCGC
TTGTGATGCCGTCAAGAGCTCCCACCGACCATACAGCGCTGATATCCTCGTTCCACTTTC
TAG
■■Homology search results ■■ -
sp_hit_id Q8YRC9
Definition sp|Q8YRC9|THIG_ANASP Bifunctional protein goxB/thiG OS=Anabaena sp. (strain PCC 7120)
Align length 36
Score (bit) 32.7
E-value 0.61
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920317|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_F06.
(423 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8YRC9|THIG_ANASP Bifunctional protein goxB/thiG OS=Anabaena ... 33 0.61
sp|A9HY25|TTCA_BORPD tRNA 2-thiocytidine biosynthesis protein tt... 31 2.3
sp|Q9BYS1|KRA15_HUMAN Keratin-associated protein 1-5 OS=Homo sap... 31 2.3
sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus m... 31 2.3
sp|P27782|LEF1_MOUSE Lymphoid enhancer-binding factor 1 OS=Mus m... 30 3.0
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ... 30 3.0
sp|B1Y629|TTCA_LEPCP tRNA 2-thiocytidine biosynthesis protein tt... 30 3.9
sp|Q9UJU2|LEF1_HUMAN Lymphoid enhancer-binding factor 1 OS=Homo ... 30 5.0
sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Hom... 29 6.6
sp|Q8N4B5|PRR18_HUMAN Proline-rich protein 18 OS=Homo sapiens GN... 29 6.8
sp|Q1QRT1|AROA_NITHX 3-phosphoshikimate 1-carboxyvinyltransferas... 29 6.8
sp|Q32MQ0|ZN750_HUMAN Protein ZNF750 OS=Homo sapiens GN=ZNF750 P... 29 8.6
sp|Q0AA41|TTCA_ALHEH tRNA 2-thiocytidine biosynthesis protein tt... 29 8.6
sp|P36202|PDLI4_RAT PDZ and LIM domain protein 4 OS=Rattus norve... 29 8.6
sp|Q9QBZ0|ENV_HV1M2 Envelope glycoprotein gp160 OS=Human immunod... 29 8.6
sp|P13983|EXTN_TOBAC Extensin OS=Nicotiana tabacum GN=HRGPNT3 PE... 29 8.8

>sp|Q8YRC9|THIG_ANASP Bifunctional protein goxB/thiG OS=Anabaena sp.
(strain PCC 7120) GN=goxB/thiG PE=3 SV=1
Length = 652

Score = 32.7 bits (73), Expect = 0.61
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1

Query: 150 LVCLDFGPAVSATKARVLAPEIKLRGCGAMKSLRWR 43
++C DF A + A +LAP+ + GAMKSL WR
Sbjct: 30 VICRDFQAAAAHAAAGMLAPDAEQITDGAMKSLCWR 65


>sp|A9HY25|TTCA_BORPD tRNA 2-thiocytidine biosynthesis protein ttcA
OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
CCUG 43448) GN=ttcA PE=3 SV=1
Length = 324

Score = 30.8 bits (68), Expect = 2.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2

Query: 23 ATRLLAGRHRKDFMAPHPLSLISGASTLAFVALTAGPKSRHTNGQPLEFL 172
AT++ G HR D +A L+L G A RHT +PL ++
Sbjct: 150 ATKIALGHHRDDILATFFLNLFYGGKAKAMPPKLVSDDGRHTVIRPLAYV 199


>sp|Q9BYS1|KRA15_HUMAN Keratin-associated protein 1-5 OS=Homo
sapiens GN=KRTAP1-5 PE=2 SV=1
Length = 174

Score = 30.8 bits (68), Expect = 2.3
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = +3

Query: 171 WLRPSHSTKAQRLCPPLSTLACYSLRCYGPALKFPHTHIQCLASLLCCITPLSPVACCNP 350
W RP + L PP ++C C + H C C + PV CC P
Sbjct: 118 WCRPDSRVEGTYL-PPCCVVSCTPPSC----CQLHHAQASCCRPSYCGQSCCRPVCCCEP 172

Query: 351 T 353
T
Sbjct: 173 T 173


>sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus
musculus GN=Grhl1 PE=2 SV=1
Length = 618

Score = 30.8 bits (68), Expect = 2.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2

Query: 266 EVSPHTHTMSC*PAVLHNSPLSRSLLQPNELACDAVKSSHRPYSADILVP 415
E+ PH + PAV H+ P R ++ L+ D S +P +A P
Sbjct: 160 EIQPHGFAVGIPPAVYHSEPTERVVVFDRSLSTDQFSSGTQPPNAQRRTP 209


>sp|P27782|LEF1_MOUSE Lymphoid enhancer-binding factor 1 OS=Mus
musculus GN=Lef1 PE=1 SV=1
Length = 397

Score = 30.4 bits (67), Expect = 3.0
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2

Query: 59 FMAPHPLSLISGASTLAFVA-LTAGPKSRHTNGQPLEFLATPFTLHQSPETMSSTLYL 229
F P+P SL S F + GP HT G P + TP + P T S +++
Sbjct: 223 FRQPYPSSLSGDTSMSRFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHV 280


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
OS=Homo sapiens GN=SRRM2 PE=1 SV=2
Length = 2752

Score = 30.4 bits (67), Expect = 3.0
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1

Query: 37 SWSPP*RLHGSTPPEFNLRSQHPRFCCTYSWPKIKTHQRPAPRVSGYALHTP-PKPRDYV 213
S SP ++ TPP R H Y PK+K P P +SG P K +D +
Sbjct: 972 SSSPDTKVKPETPP----RQSHSGSISPY--PKVKAQTPPGPSLSGSKSPCPQEKSKDSL 1025

Query: 214 LHSLPWLATACA 249
+ S P + CA
Sbjct: 1026 VQSCPGSLSLCA 1037


>sp|B1Y629|TTCA_LEPCP tRNA 2-thiocytidine biosynthesis protein ttcA
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=ttcA PE=3 SV=1
Length = 326

Score = 30.0 bits (66), Expect = 3.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2

Query: 23 ATRLLAGRHRKDFMAPHPLSLISGASTLAFVALTAGPKSRHTNGQPLEFLA 175
AT++ G HR DF+ L++ G+ RHT +PL ++A
Sbjct: 158 ATKIALGHHRDDFLGTVFLNMFFGSKLKGMPPKLVSDDGRHTVIRPLAYVA 208


>sp|Q9UJU2|LEF1_HUMAN Lymphoid enhancer-binding factor 1 OS=Homo
sapiens GN=LEF1 PE=1 SV=1
Length = 399

Score = 29.6 bits (65), Expect = 5.0
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2

Query: 59 FMAPHPLSLISGASTLAFVA-LTAGPKSRHTNGQPLEFLATPFTLHQSPETMSSTLYL 229
F P+P SL S F + GP HT G P + TP + P T S +++
Sbjct: 225 FRQPYPSSLSVDTSMSRFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHV 282


>sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Homo
sapiens GN=TTC12 PE=2 SV=1
Length = 705

Score = 29.3 bits (64), Expect = 6.6
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = -3

Query: 409 EDISAVWSVGALDGITSELVGLQQATGERGVMQHSRLARHCMCVWGNFKAGP*QRRL*QA 230
E+ VW L G+ L G+ + + V S L + C+ + GN A P RR A
Sbjct: 414 EERFQVWFQANLPGVLPALTGVLKTDPK--VSSSSALCQ-CIAIMGNLSAEPTTRRHMAA 470

Query: 229 KVESGGHSLWALVECE 182
E G L L CE
Sbjct: 471 CEEFGDGCLSLLARCE 486


>sp|Q8N4B5|PRR18_HUMAN Proline-rich protein 18 OS=Homo sapiens
GN=PRR18 PE=2 SV=1
Length = 295

Score = 29.3 bits (64), Expect = 6.8
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1

Query: 97 QHPRFCCTYSWPKIKTHQRPAPRVSGYALHTPPKPRDYVLHSLPWLATACAVTALP 264
Q P + SWP + PA R G PP P +LP A A A A P
Sbjct: 38 QRPEGLLSSSWPSATLKRPPARRGPGLDRTQPPAPPGVSPQALPSRARAPATCAPP 93


tr_hit_id A3IP68
Definition tr|A3IP68|A3IP68_9CHRO Putative uncharacterized protein OS=Cyanothece sp. CCY 0110
Align length 51
Score (bit) 36.6
E-value 0.63
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920317|Adiantum capillus-veneris mRNA, clone:
YMU001_000135_F06.
(423 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3IP68|A3IP68_9CHRO Putative uncharacterized protein OS=Cyano... 37 0.63
tr|A7SUX5|A7SUX5_NEMVE Predicted protein (Fragment) OS=Nematoste... 36 0.83
tr|B6Q442|B6Q442_PENMA Autophagy protein Atg13, putative OS=Peni... 35 1.4
tr|O89525|O89525_9POTY Polyprotein OS=Ryegrass mosaic virus PE=4... 35 2.4
tr|B1WZV5|B1WZV5_CYAA5 Putative uncharacterized protein OS=Cyano... 34 4.1
tr|A9UUU4|A9UUU4_MONBE Predicted protein OS=Monosiga brevicollis... 34 4.1
tr|B8LYK9|B8LYK9_9EURO Autophagy protein Atg13, putative OS=Tala... 34 4.1
tr|Q8NAH9|Q8NAH9_HUMAN cDNA FLJ35331 fis, clone PROST2014659 OS=... 33 5.4
tr|Q8DLX3|Q8DLX3_THEEB Tlr0353 protein OS=Thermosynechococcus el... 33 7.0
tr|Q8LME0|Q8LME0_ORYSJ Putative uncharacterized protein OJ1325D0... 33 7.0
tr|Q5C745|Q5C745_SCHJA SJCHGC07993 protein (Fragment) OS=Schisto... 33 7.0
tr|Q4J5G3|Q4J5G3_AZOVI Glucose-inhibited division protein A subf... 33 7.0
tr|B5CY76|B5CY76_9BACE Putative uncharacterized protein OS=Bacte... 33 7.0
tr|Q648I1|Q648I1_9ARCH Putative uncharacterized protein OS=uncul... 33 7.0
tr|B1KCU4|B1KCU4_BURCC Putative uncharacterized protein OS=Burkh... 33 9.2
tr|Q010M0|Q010M0_OSTTA Prolylcarboxypeptidase (Angiotensinase C)... 33 9.2
tr|A7RVT7|A7RVT7_NEMVE Predicted protein (Fragment) OS=Nematoste... 33 9.2

>tr|A3IP68|A3IP68_9CHRO Putative uncharacterized protein
OS=Cyanothece sp. CCY 0110 GN=CY0110_25918 PE=4 SV=1
Length = 273

Score = 36.6 bits (83), Expect = 0.63
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1

Query: 124 SWPKIKTHQRPAPRVSGYALHTPPKPRDYVLHSLPWLATACAVTALP*SFP 276
++P+ +Q V+G+ +H+P P DY+L S ++ T CAV A P P
Sbjct: 159 AYPEPDAYQGQKADVTGFVVHSPLLPEDYILLS-RFIITCCAVDAYPVGLP 208


>tr|A7SUX5|A7SUX5_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g133066 PE=4 SV=1
Length = 185

Score = 36.2 bits (82), Expect = 0.83
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3

Query: 207 LCPPLSTLACYSLRCYGPALKFPHTHIQCLASLLCCITP----LSPVACC 344
LC PL L C+SL C P L ++ C+ LCC+ P + P CC
Sbjct: 113 LCHPLPLL-CHSLYCVSPYLCCVTPYLCCVIPYLCCVIPYLCCVIPYLCC 161


>tr|B6Q442|B6Q442_PENMA Autophagy protein Atg13, putative
OS=Penicillium marneffei ATCC 18224 GN=PMAA_030310 PE=4
SV=1
Length = 974

Score = 35.4 bits (80), Expect = 1.4
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Frame = +2

Query: 50 RKDFMAPHPLSLISGASTLAFVALTAGPKSRHTNGQPLEFLATPFTLHQSPETMSSTL-- 223
RKD ++P + + A+ ALT + R TN + +++ F LH+S + S L
Sbjct: 581 RKDLLSPVKKAAVDAATRRTSAALTRFQRMRDTNAALSDSMSSSFHLHRSSSSSSRQLSS 640

Query: 224 ----YLGLLQPALLRPCLEVSPHTHTMSC*PAVLHNSPLSRSLLQPNELACDAVKSSHRP 391
G P VSPHT ++P RS L N + + + P
Sbjct: 641 VPPMVAGTSISTASSPGKPVSPHT----------PHTPAIRSRLGSNNIITNDRERDASP 690

Query: 392 YSADI 406
+D+
Sbjct: 691 RQSDV 695


>tr|O89525|O89525_9POTY Polyprotein OS=Ryegrass mosaic virus PE=4 SV=1
Length = 3086

Score = 34.7 bits (78), Expect = 2.4
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +2

Query: 32 LLAGRHRKDFMAPHPLSLISGASTLAFVALTAGPKSRHTNGQPLEFLAT 178
LLAG +K M H LS SG T A+ KSR+ G +E +AT
Sbjct: 1669 LLAGERKKQEMFTHHLSTTSGGYTFGLNAIAMCIKSRYAKGYCIENIAT 1717


>tr|B1WZV5|B1WZV5_CYAA5 Putative uncharacterized protein
OS=Cyanothece (strain ATCC 51142) GN=cce_3506 PE=4 SV=1
Length = 275

Score = 33.9 bits (76), Expect = 4.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1

Query: 124 SWPKIKTHQRPAPRVSGYALHTPPKPRDYVLHSLPWLATACAVTALP*SFP 276
++P+ +Q V+G+ +H+P P DY+L + ++ + CAV A P P
Sbjct: 161 AYPEPDAYQGQKANVTGFVVHSPLLPDDYILLT-RFIISCCAVDAYPVGLP 210


>tr|A9UUU4|A9UUU4_MONBE Predicted protein OS=Monosiga brevicollis
GN=23789 PE=4 SV=1
Length = 17829

Score = 33.9 bits (76), Expect = 4.1
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2

Query: 83 LISGASTLAFVALTAGPKSRHTNGQPLEFLATPFTLHQSPETMSSTLYLGLLQPALLRPC 262
+I AST+A A + P+ H + QP+ PF E+ +T++ P +
Sbjct: 2089 VICDASTIAEAAAPSEPRFAHLDIQPIN--DAPFVRSPLAESSGATIFFEGRGPVFIAED 2146

Query: 263 LEVSPHTHTMSC*PAVLHNSPLSRSLLQPNELACDAVKSSHR-PYSADILVPLS 421
L V M + +P+ R ++QP LA + S YS + L+ LS
Sbjct: 2147 LSVHDDDSLMLTEATAVLLNPVDRDVVQPELLAVNTTGSGLAFSYSVNGLLRLS 2200


>tr|B8LYK9|B8LYK9_9EURO Autophagy protein Atg13, putative
OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_067950 PE=4
SV=1
Length = 974

Score = 33.9 bits (76), Expect = 4.1
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +2

Query: 50 RKDFMAPHPLSLISGASTLAFVALTAGPKSRHTNGQPLEFLATPFTLHQSPETMSSTL-- 223
RKD ++P + + A+ ALT + R TN + +++ F LH+S + S L
Sbjct: 579 RKDLLSPVKAAAVDAATRRTSAALTRFQRMRDTNAALSDSMSSSFHLHRSSSSSSRQLSS 638

Query: 224 ----YLGLLQPALLRPCLEVSPHT-HT 289
G P +SPHT HT
Sbjct: 639 VPPMVAGTSISTASSPGKPISPHTPHT 665


>tr|Q8NAH9|Q8NAH9_HUMAN cDNA FLJ35331 fis, clone PROST2014659
OS=Homo sapiens PE=2 SV=1
Length = 577

Score = 33.5 bits (75), Expect = 5.4
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Frame = +3

Query: 96 PAPSLLLHLQLAQNQDTPTASP*--SFWLRPSHSTKAQRLCPPLSTLACYSLRCYGPALK 269
P +LL L P +P L + + + R P L + S RC
Sbjct: 333 PLHQILLLLSARYYSSPPDTTPPLRQMLLVSARCSSSPRDAPRLHRMLLLSTRCCSSPRD 392

Query: 270 FPHTHIQCLASLLCCITPLSPVACCNPTSSLVMP---SRAPTDHT 395
PH H L S CC SP A +P L++P S +P D T
Sbjct: 393 APHLHRMLLVSTSCC---SSPPAAPHPHWMLLIPAGCSSSPPDPT 434


>tr|Q8DLX3|Q8DLX3_THEEB Tlr0353 protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=tlr0353 PE=4 SV=1
Length = 262

Score = 33.1 bits (74), Expect = 7.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1

Query: 67 STPPEFNLRSQHPRFCCTYSW-------PKIKTHQRPAPRVSGYALHTPPKPRDYVLHSL 225
+TP F L SQ P+ W P+ + R+ G+A+H+P P Y+ S
Sbjct: 136 NTPVAFRL-SQRPQDRTLIDWIRTLDVYPEPDAYSGLPARIEGFAVHSPQLPETYLTLS- 193

Query: 226 PWLATACAVTALP*SFP 276
++ T CA A P P
Sbjct: 194 RFVMTCCAADAYPVGLP 210


>tr|Q8LME0|Q8LME0_ORYSJ Putative uncharacterized protein
OJ1325D05.30 OS=Oryza sativa subsp. japonica
GN=OJ1325D05.30 PE=4 SV=1
Length = 405

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1

Query: 133 KIKTHQRPAPRVSGYALHTPPKPRDYVLHSLP 228
K+ H+R PR LHT P+PR LH LP
Sbjct: 199 KVLRHRRRRPRPPPSTLHTEPEPRHRQLHPLP 230