BP920277 |
Clone id |
YMU001_000135_B06 |
Library |
YMU01 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000135_B06. |
Accession |
BP920277 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTCATTGAGGACTACGACATACTTAGGCATAACCTGCTGAATGGTCACAGAGAGGCACAT AATGTCAATCGATCTACAGATATAGATGGTGGCTCACTGGACCCAGAGTTAGAAGAGGGC TTACAAGGCCTAATGAGCATGAGGTCCGAAAGAGATTTTTTCCAATTGCAGAGGACCGAC TCCCCTGATGTTAAACTTAAGGTGCCTCAATTGGCATTAAAACACTTAAATGAGGAACAG AGCTGTGACAGAGCAGAGAGCAGTAGCCCAAATGTTTTACTGGCAACGGAAAGAACTGGT GATTATGGTGCTGACCTTACATTGTCATCAATAAAGCAGCAAAAAATTTGGAGTCATGCC CCATACGGTAACGGCAAGCAAAAGAGAAGATTCAAAAGCTTATCTCTGAGTTTGCCAGGA GTTGACGAAGCTGAATTTCAGTCAGATGACTCCTTAGATTCTTTGTTTGGGCCCAGTGAA CCTCAGGTGGCAACACAACTTCAAAAGCGCTTTGTGGAGCTGAAAGAAGAACATGGTAGC GAGAGCACTTCAAAGACGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A8E5U3 |
Definition |
sp|A8E5U3|L12R1_XENTR Loss of heterozygosity 12 chromosomal region 1 protein homolog OS=Xenopus tropicalis |
Align length |
114 |
Score (bit) |
35.0 |
E-value |
0.25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920277|Adiantum capillus-veneris mRNA, clone: YMU001_000135_B06. (559 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A8E5U3|L12R1_XENTR Loss of heterozygosity 12 chromosomal regi... 35 0.25 sp|Q5PPY2|L12R1_XENLA Loss of heterozygosity 12 chromosomal regi... 35 0.25 sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster G... 33 0.73 sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2 33 0.73 sp|Q8IVF2|AHNK2_HUMAN Protein AHNAK2 OS=Homo sapiens GN=AHNAK2 P... 33 0.73 sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM... 32 1.6 sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane pr... 32 1.6 sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM... 32 1.6 sp|P52591|PO121_RAT Nuclear envelope pore membrane protein POM 1... 32 2.8 sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=B... 30 6.2 sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 ... 30 6.2 sp|P21520|SCA_DROME Protein scabrous OS=Drosophila melanogaster ... 30 8.1
>sp|A8E5U3|L12R1_XENTR Loss of heterozygosity 12 chromosomal region 1 protein homolog OS=Xenopus tropicalis GN=loh12cr1 PE=2 SV=1 Length = 196
Score = 35.0 bits (79), Expect = 0.25 Identities = 30/114 (26%), Positives = 51/114 (44%) Frame = +1
Query: 43 GHREAHNVNRSTDIDGGSLDPELEEGLQGLMSMRSERDFFQLQRTDSPDVKLKVPQLALK 222 G + NV++ ++ P + L+GL+S ++ +L+R DSP +V QL ++ Sbjct: 40 GTQSLRNVSKDPEVIKLQEIPTFQPLLKGLLSGQTSPTNVRLERLDSP----QVLQLCVR 95
Query: 223 HLNEEQSCDRAESSSPNVLLATERTGDYGADLTLSSIKQQKIWSHAPYGNGKQK 384 + C A S N L+ + D D L S+ Q++ A Y QK Sbjct: 96 YQEHLHQCAEAVSFDQNALVKRIKEMDSSVD-GLYSLMQERQKRFAKYAEQIQK 148
>sp|Q5PPY2|L12R1_XENLA Loss of heterozygosity 12 chromosomal region 1 protein homolog OS=Xenopus laevis GN=loh12cr1 PE=2 SV=1 Length = 196
Score = 35.0 bits (79), Expect = 0.25 Identities = 30/114 (26%), Positives = 51/114 (44%) Frame = +1
Query: 43 GHREAHNVNRSTDIDGGSLDPELEEGLQGLMSMRSERDFFQLQRTDSPDVKLKVPQLALK 222 G + NV++ ++ P + L+GL+S ++ +L+R DSP +V QL ++ Sbjct: 40 GTQSLRNVSKDPEVIKLQEIPTFQPLLKGLLSGQTSPTNVRLERLDSP----QVLQLCVR 95
Query: 223 HLNEEQSCDRAESSSPNVLLATERTGDYGADLTLSSIKQQKIWSHAPYGNGKQK 384 + C A S N L+ + D D L S+ Q++ A Y QK Sbjct: 96 YQEHLHQCAEAVSFDQNALVKRIKEMDSSVD-GLYSLMQERQKRFAKYAEQIQK 148
>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2 Length = 1531
Score = 33.5 bits (75), Expect = 0.73 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1
Query: 319 TLSSIKQQKIWSHAPYGNGKQKRRFKSLSLSLPGVDEAEFQSDDSLDSLFGPSEPQVATQ 498 TL + + SHAPYG G +K+R SL LP D E + + + + Q Q Sbjct: 1469 TLGPLSGSLLHSHAPYGGGARKQR--SLPAHLPRYDNVEVRLQAMREEFYAYRKRQAMQQ 1526
Query: 499 LQ 504 ++ Sbjct: 1527 ME 1528
>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2 Length = 22152
Score = 33.5 bits (75), Expect = 0.73 Identities = 29/126 (23%), Positives = 51/126 (40%) Frame = +1
Query: 70 RSTDIDGGSLDPELEEGLQGLMSMRSERDFFQLQRTDSPDVKLKVPQLALKHLNEEQSCD 249 ++TD+ SL+PE M++ S+ + T + A H+ + + Sbjct: 9475 KATDMLDASLEPETTSAPN--MNITSDESLATSKATTETEAIHVFENTAASHVETTSATE 9532
Query: 250 RAESSSPNVLLATERTGDYGADLTLSSIKQQKIWSHAPYGNGKQKRRFKSLSLSLPGVDE 429 SSSP +E T +T SSI+ + + P +G + +S+S PG+ E Sbjct: 9533 ELYSSSPGF---SEPTKVISPVVTSSSIRDNMVSTTMPGSSGITRIEIESMSSLTPGLRE 9589
Query: 430 AEFQSD 447 D Sbjct: 9590 TRTSQD 9595
>sp|Q8IVF2|AHNK2_HUMAN Protein AHNAK2 OS=Homo sapiens GN=AHNAK2 PE=1 SV=2 Length = 5795
Score = 33.5 bits (75), Expect = 0.73 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 28/183 (15%) Frame = +1
Query: 79 DIDGGSLDPELEEG-LQGLMSMRSERDFFQLQRTDSPDVKLKVPQLALKHLNEEQSCDRA 255 ++ G +D +L EG + ++ Q+ P+V LK PQ+ +K N + +A Sbjct: 2706 EVQAGQVDVKLPEGHVPEGAGLKGHLPKLQMPSFKMPEVDLKGPQIDVKGPNVDLKGPKA 2765
Query: 256 ESSSPNV--LLATERTGDYGADLTLSSIKQQKIWSHAPYGNGKQKRRFK-------SLSL 408 E ++P+V L++ L + + S A G + +FK S + Sbjct: 2766 EVTAPDVKMSLSSMEVDVQAPRAKLDGARLEGDLSLADKGMTAKDSKFKMPKFKMPSFGV 2825
Query: 409 SLPG--------VDEAEFQSDDSLDSLFG----------PSEPQVATQLQKRFVELKEEH 534 S PG V E + ++D S S+ G P Q+ Q + V+L E H Sbjct: 2826 SAPGKSIEASVDVSELKVEADGSFPSMQGDLKTTDIRIQPPSAQLEVQAGQVDVKLPEGH 2885
Query: 535 GSE 543 E Sbjct: 2886 VPE 2888
Score = 30.0 bits (66), Expect = 8.1 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 28/183 (15%) Frame = +1
Query: 79 DIDGGSLDPELEEG-LQGLMSMRSERDFFQLQRTDSPDVKLKVPQLALKHLNEEQSCDRA 255 ++ G +D +L EG + ++ Q+ P++ LK PQL +K + +A Sbjct: 2541 EVQAGQVDVKLPEGPVPEGAGLKGHLPKVQMPSFKMPEMDLKGPQLDVKGPKLDLKGPKA 2600
Query: 256 ESSSPNV--LLATERTGDYGADLTLSSIKQQKIWSHAPYGNGKQKRRFK-------SLSL 408 E ++P+V L++ L + + S A G + +FK S + Sbjct: 2601 EVTAPDVEMSLSSMEVDVQAPRAKLDGARLEGDLSLADKGVTAKDSKFKMPKFKMPSFRV 2660
Query: 409 SLPG--------VDEAEFQSDDSLDSLFG----------PSEPQVATQLQKRFVELKEEH 534 S PG V E + ++D SL S+ G P Q+ Q + V+L E H Sbjct: 2661 SAPGESIEALVDVSELKVEADMSLPSMQGDLKTTDISIQPPSAQLEVQAGQVDVKLPEGH 2720
Query: 535 GSE 543 E Sbjct: 2721 VPE 2723
>sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM 121C OS=Homo sapiens GN=POM121C PE=1 SV=2 Length = 1229
Score = 32.3 bits (72), Expect = 1.6 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Frame = +1
Query: 136 SMRSERDFFQLQRTDSPDV---------KLKVPQLALKHLNEEQSCDRAESSSPNVLLAT 288 S S R QL + + P + + P+ K + EE+ C + SS+P + Sbjct: 393 SYSSTRGISQLWKRNGPSSSPFSSPASSRSQTPERPAKKIREEELCHHSSSSTP-LAADK 451
Query: 289 ERTGDYGADLTLSSIKQQKIWSHAPYGNGKQKRRFKSL------SLSLPGVDEAEFQ-SD 447 E G+ AD T KQ P +G++KR+ + L L+LP + + + Sbjct: 452 ESQGEKAADTTPRK-KQNSNSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITA 510
Query: 448 DSLDSLFGPSEPQVATQLQKRFVELKEEHGSESTSKT 558 + LD E + + Q + +E K + S S ++T Sbjct: 511 EDLD-----LEKKASLQWFNQALEDKSDAASNSVTET 542
>sp|A6NF01|P121B_HUMAN Putative nuclear envelope pore membrane protein POM 121B OS=Homo sapiens GN=POM121B PE=5 SV=2 Length = 834
Score = 32.3 bits (72), Expect = 1.6 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%) Frame = +1
Query: 199 KVPQLALKHLNEEQSCDRAESSSPNVLLATERTGDYGADLTLSSIKQQKIWSHAPYGNGK 378 + P+ K + EE+ C + SS+P + E G+ AD T KQ P +G+ Sbjct: 30 QTPERPAKKIREEEMCHHSSSSTP-LAADKESQGEKAADTTPRK-KQNSNSQSTPGSSGQ 87
Query: 379 QKRRFKSL------SLSLPGVDEAEFQ-SDDSLDSLFGPSEPQVATQLQKRFVELKEEHG 537 +KR+ + L L+LP + + + + LD E + + Q + +E K + Sbjct: 88 RKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLD-----LEKKASLQWFNQALEDKSDAA 142
Query: 538 SESTSKT 558 S S ++T Sbjct: 143 SNSVTET 149
>sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM 121 OS=Homo sapiens GN=POM121 PE=1 SV=2 Length = 1249
Score = 32.3 bits (72), Expect = 1.6 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Frame = +1
Query: 136 SMRSERDFFQLQRTDSPDV---------KLKVPQLALKHLNEEQSCDRAESSSPNVLLAT 288 S S R QL + + P + + P+ K + EE+ C + SS+P + Sbjct: 416 SYSSTRGISQLWKRNGPSSSPFSSPASSRSQTPERPAKKIREEELCHHSSSSTP-LAADR 474
Query: 289 ERTGDYGADLTLSSIKQQKIWSHAPYGNGKQKRRFKSL------SLSLPGVDEAEFQ-SD 447 E G+ AD T KQ P +G++KR+ + L L+LP + + + Sbjct: 475 ESQGEKAADTTPRK-KQNSNSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITA 533
Query: 448 DSLDSLFGPSEPQVATQLQKRFVELKEEHGSESTSKT 558 + LD E + + Q + +E K + S S ++T Sbjct: 534 EDLD-----LEKKASLQWFNQALEDKSDAASNSVTET 565
>sp|P52591|PO121_RAT Nuclear envelope pore membrane protein POM 121 OS=Rattus norvegicus GN=Pom121 PE=1 SV=1 Length = 1199
Score = 31.6 bits (70), Expect = 2.8 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +1
Query: 199 KVPQLALKHLNEEQSCDRAESSSPNVLLATERTGDYGADLTLSSIKQQKIWSH--APYGN 372 + P+ K EE+ C ++ SS+P L T++ ++ KQQ +W+ P + Sbjct: 420 QTPERPAKKTREEEPCHQSSSSAP---LVTDKESPGEKVTDPATGKQQSLWTSPPTPGSS 476
Query: 373 GKQKRRFKSL 402 G++KR+ + L Sbjct: 477 GQRKRKIQLL 486
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Length = 429
Score = 30.4 bits (67), Expect = 6.2 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Frame = +1
Query: 133 MSMRSERDFFQLQRTDSPDVKLKVPQLALKHLNEEQSCDRAESSSPNVLLATERTGDYGA 312 + M +++ QL R SP K K P + L L+ SC A + N L E+ D A Sbjct: 161 VKMPQKKEDPQLPRKTSP--KSKAPVVDLLGLDAPVSCSIANGKTSNTL---EKDLDLLA 215
Query: 313 DLTL--SSIKQQKIWSHAPYGNGKQKRRFKSLSLSLPGVDEAEFQ----SDDSLDSLFGP 474 ++ SS+ ++ + S G+ +L PG E S DS+ SL+G Sbjct: 216 SVSSPSSSVSRKVVGSMPTPGSAGSVPENLNL-FPEPGSKSEETSKKQLSKDSILSLYGS 274
Query: 475 SEPQVATQ 498 PQ+ TQ Sbjct: 275 QTPQMPTQ 282
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q86G47 |
Definition |
tr|Q86G47|Q86G47_DICDI Nucleotide exchange factor RasGEF Q (Ras guanine nucleotide exchange factor) OS=Dictyostelium discoideum |
Align length |
132 |
Score (bit) |
38.1 |
E-value |
0.33 |
Report |
|