BP920247
Clone id YMU001_000134_G05
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000134_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACTTGGGGAGGGTGGATCTACAGAGGTTGACATGAAGTGGATGATGCAGGTGAGCCTGTT
GGGGATGAAGATTAGGATGACATCCATGATCTCCATGACACCACTACAGATTGGCAGGCT
GGCTCTTCTGCCAATTGGTCCTTGAGCCTTGGCCCTTGGGCCTTGACATGTTTCCATTAT
GGCATTTTGGCATATATGTATTGATCTCTTGAGTCCACAGTGGCTAGTCTTTACTCTTGA
GCCTTGACTCTTATCTTTCCTCAGTGCTTACCTTTTTGTAGCACCTTGGCTGGCCTTATA
AGCCACACTTGAATTTATAGTCATAGTCTTTTAAAGTTTATACTCCGTCTTTCTCTCTAT
TGAGCTCTTTAATCTTTGCACTTCCTAGATAATGTTATCTGTGATGCGCTTAGTATGTTG
TGAGGTGTCTA
■■Homology search results ■■ -
sp_hit_id Q3AKT2
Definition sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9605)
Align length 31
Score (bit) 34.3
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920247|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G05.
(431 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcu... 34 0.22
sp|Q7U669|PSBA2_SYNPX Photosystem Q(B) protein 2 OS=Synechococcu... 34 0.22
sp|Q96Q06|K1881_HUMAN Protein KIAA1881 OS=Homo sapiens GN=KIAA18... 32 1.4
sp|Q7U4Z3|PSBA3_SYNPX Photosystem Q(B) protein 3 OS=Synechococcu... 30 3.2
sp|Q3AV15|PSBA2_SYNS9 Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2
sp|Q0I912|PSBA2_SYNS3 Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2
sp|A5GJU5|PSBA2_SYNPW Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2
sp|Q7NJX5|PSBA2_GLOVI Photosystem Q(B) protein 2 OS=Gloeobacter ... 30 3.2
sp|Q3AM89|PSBA1_SYNSC Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2
sp|Q0I7J2|PSBA1_SYNS3 Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2
sp|A5GTY4|PSBA1_SYNR3 Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2
sp|Q7TTJ7|PSBA1_SYNPX Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2
sp|P15191|PSBA_PROHO Photosystem Q(B) protein OS=Prochlorothrix ... 30 4.2
sp|Q3AYB8|PSBA1_SYNS9 Photosystem Q(B) protein 1 OS=Synechococcu... 30 4.2
sp|P51759|PSBA_CYAA5 Photosystem Q(B) protein OS=Cyanothece (str... 30 5.5
sp|Q10VK7|PSBA2_TRIEI Photosystem Q(B) protein 2 OS=Trichodesmiu... 30 5.5
sp|P16033|PSBA2_SYNY3 Photosystem Q(B) protein 2 OS=Synechocysti... 30 5.5
sp|Q11A00|PSBA1_TRIEI Photosystem Q(B) protein 1 OS=Trichodesmiu... 30 5.5
sp|A5GIM7|PSBA1_SYNPW Photosystem Q(B) protein 1 OS=Synechococcu... 30 5.5
sp|Q46JV2|PSBA_PROMT Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A2BP21|PSBA_PROMS Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|Q7V365|PSBA_PROMP Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|Q31A92|PSBA_PROM9 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A2BUK1|PSBA_PROM5 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A8G5N5|PSBA_PROM2 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A2C057|PSBA_PROM1 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A3PAU3|PSBA_PROM0 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1
sp|A5GTY5|PSBA2_SYNR3 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1
sp|Q5N4D2|PSBA2_SYNP6 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1
sp|B1XMC3|PSBA2_SYNP2 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1

>sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcus
sp. (strain CC9605) GN=psbA3 PE=3 SV=1
Length = 358

Score = 34.3 bits (77), Expect = 0.22
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 96 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 126


>sp|Q7U669|PSBA2_SYNPX Photosystem Q(B) protein 2 OS=Synechococcus
sp. (strain WH8102) GN=psbA2 PE=3 SV=1
Length = 358

Score = 34.3 bits (77), Expect = 0.22
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 96 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 126


>sp|Q96Q06|K1881_HUMAN Protein KIAA1881 OS=Homo sapiens GN=KIAA1881
PE=2 SV=2
Length = 1357

Score = 31.6 bits (70), Expect = 1.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -3

Query: 267 ALRKDKSQGSRVKTSHCGLKRSIHICQNAIMETCQGPRAKAQGPIGR 127
A+++++ G V + CGL R +H + ++ + QG A+ Q P+GR
Sbjct: 1246 AVQEERDAG--VLSRVCGLLRQLHTAYSGLVSSLQGLPAELQQPVGR 1290


>sp|Q7U4Z3|PSBA3_SYNPX Photosystem Q(B) protein 3 OS=Synechococcus
sp. (strain WH8102) GN=psbA3 PE=3 SV=1
Length = 359

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127


>sp|Q3AV15|PSBA2_SYNS9 Photosystem Q(B) protein 2 OS=Synechococcus
sp. (strain CC9902) GN=psbA2 PE=3 SV=1
Length = 359

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127


>sp|Q0I912|PSBA2_SYNS3 Photosystem Q(B) protein 2 OS=Synechococcus
sp. (strain CC9311) GN=psbA2 PE=3 SV=2
Length = 359

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127


>sp|A5GJU5|PSBA2_SYNPW Photosystem Q(B) protein 2 OS=Synechococcus
sp. (strain WH7803) GN=psbA2 PE=3 SV=1
Length = 358

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 96 WEAASLDEWLYNGGPYQLVVFHFLIGISAYM 126


>sp|Q7NJX5|PSBA2_GLOVI Photosystem Q(B) protein 2 OS=Gloeobacter
violaceus GN=psbA2 PE=3 SV=1
Length = 360

Score = 30.4 bits (67), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AY+
Sbjct: 97 WEAASMDEWLYNGGPYQLVVFHFLIGIFAYL 127


>sp|Q3AM89|PSBA1_SYNSC Photosystem Q(B) protein 1 OS=Synechococcus
sp. (strain CC9605) GN=psbA1 PE=3 SV=1
Length = 359

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127


>sp|Q0I7J2|PSBA1_SYNS3 Photosystem Q(B) protein 1 OS=Synechococcus
sp. (strain CC9311) GN=psbA1 PE=3 SV=1
Length = 359

Score = 30.4 bits (67), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L FH+ GI AYM
Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127


tr_hit_id B4Z054
Definition tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment) OS=uncultured bacterium
Align length 31
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920247|Adiantum capillus-veneris mRNA, clone:
YMU001_000134_G05.
(431 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment) OS=u... 35 1.4
tr|A6YDZ1|A6YDZ1_9ZZZZ Photosynthetic reaction center protein (F... 35 1.9
tr|B4YZZ7|B4YZZ7_9VIRU Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|A6YDU9|A6YDU9_9ZZZZ Photosynthetic reaction center protein (F... 34 3.2
tr|Q5Y1D0|Q5Y1D0_9SYNE Photosystem II D1 protein (Fragment) OS=u... 34 3.2
tr|Q5Y1C8|Q5Y1C8_9SYNE Photosystem II D1 protein (Fragment) OS=u... 34 3.2
tr|Q1HLV9|Q1HLV9_SYNPZ Photosystem D1 core reaction center prote... 34 3.2
tr|Q1HLV8|Q1HLV8_9SYNE Photosystem D1 core reaction center prote... 34 3.2
tr|B4Z111|B4Z111_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z105|B4Z105_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0K2|B4Z0K2_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0K0|B4Z0K0_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0J9|B4Z0J9_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0C9|B4Z0C9_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0C7|B4Z0C7_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0C6|B4Z0C6_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0C1|B4Z0C1_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0B6|B4Z0B6_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z0B5|B4Z0B5_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z053|B4Z053_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z050|B4Z050_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z049|B4Z049_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z048|B4Z048_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4Z047|B4Z047_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZY3|B4YZY3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZY2|B4YZY2_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZJ3|B4YZJ3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZI7|B4YZI7_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZI4|B4YZI4_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
tr|B4YZI3|B4YZI3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2

>tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment)
OS=uncultured bacterium GN=psbA PE=4 SV=1
Length = 249

Score = 35.4 bits (80), Expect = 1.4
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W S GP+ L CFH+ GI AYM
Sbjct: 4 WEAASLDEWLYSGGPYQLVCFHFLIGISAYM 34


>tr|A6YDZ1|A6YDZ1_9ZZZZ Photosynthetic reaction center protein
(Fragment) OS=uncultured marine organism GN=psbA PE=4
SV=1
Length = 233

Score = 35.0 bits (79), Expect = 1.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+AGS W + GP+ L CFH+ GI +Y+
Sbjct: 5 WEAGSLDEWLYNGGPYQLVCFHFLIGIFSYL 35


>tr|B4YZZ7|B4YZZ7_9VIRU Photosystem II protein D1 (Fragment)
OS=uncultured marine virus GN=psbA PE=4 SV=1
Length = 212

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34


>tr|A6YDU9|A6YDU9_9ZZZZ Photosynthetic reaction center protein
(Fragment) OS=uncultured marine organism GN=psbA PE=4
SV=1
Length = 233

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 5 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 35


>tr|Q5Y1D0|Q5Y1D0_9SYNE Photosystem II D1 protein (Fragment)
OS=uncultured Synechococcus sp. GN=psbA PE=3 SV=1
Length = 283

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 40 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 70


>tr|Q5Y1C8|Q5Y1C8_9SYNE Photosystem II D1 protein (Fragment)
OS=uncultured Synechococcus sp. GN=psbA PE=3 SV=1
Length = 283

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 40 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 70


>tr|Q1HLV9|Q1HLV9_SYNPZ Photosystem D1 core reaction center protein
(Fragment) OS=Synechococcus sp. (strain WH8103) GN=psbA
PE=3 SV=1
Length = 243

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 14 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 44


>tr|Q1HLV8|Q1HLV8_9SYNE Photosystem D1 core reaction center protein
(Fragment) OS=Synechococcus sp. WH 8012 GN=psbA PE=3
SV=1
Length = 243

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 14 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 44


>tr|B4Z111|B4Z111_9BACT Photosystem II protein D1 (Fragment)
OS=uncultured bacterium GN=psbA PE=4 SV=1
Length = 249

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34


>tr|B4Z105|B4Z105_9BACT Photosystem II protein D1 (Fragment)
OS=uncultured bacterium GN=psbA PE=4 SV=1
Length = 249

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1

Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198
W+A S W + GP+ L CFH+ GI AYM
Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34