BP920247 |
Clone id |
YMU001_000134_G05 |
Library |
YMU01 |
Length |
431 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000134_G05. |
Accession |
BP920247 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACTTGGGGAGGGTGGATCTACAGAGGTTGACATGAAGTGGATGATGCAGGTGAGCCTGTT GGGGATGAAGATTAGGATGACATCCATGATCTCCATGACACCACTACAGATTGGCAGGCT GGCTCTTCTGCCAATTGGTCCTTGAGCCTTGGCCCTTGGGCCTTGACATGTTTCCATTAT GGCATTTTGGCATATATGTATTGATCTCTTGAGTCCACAGTGGCTAGTCTTTACTCTTGA GCCTTGACTCTTATCTTTCCTCAGTGCTTACCTTTTTGTAGCACCTTGGCTGGCCTTATA AGCCACACTTGAATTTATAGTCATAGTCTTTTAAAGTTTATACTCCGTCTTTCTCTCTAT TGAGCTCTTTAATCTTTGCACTTCCTAGATAATGTTATCTGTGATGCGCTTAGTATGTTG TGAGGTGTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3AKT2 |
Definition |
sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9605) |
Align length |
31 |
Score (bit) |
34.3 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920247|Adiantum capillus-veneris mRNA, clone: YMU001_000134_G05. (431 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcu... 34 0.22 sp|Q7U669|PSBA2_SYNPX Photosystem Q(B) protein 2 OS=Synechococcu... 34 0.22 sp|Q96Q06|K1881_HUMAN Protein KIAA1881 OS=Homo sapiens GN=KIAA18... 32 1.4 sp|Q7U4Z3|PSBA3_SYNPX Photosystem Q(B) protein 3 OS=Synechococcu... 30 3.2 sp|Q3AV15|PSBA2_SYNS9 Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2 sp|Q0I912|PSBA2_SYNS3 Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2 sp|A5GJU5|PSBA2_SYNPW Photosystem Q(B) protein 2 OS=Synechococcu... 30 3.2 sp|Q7NJX5|PSBA2_GLOVI Photosystem Q(B) protein 2 OS=Gloeobacter ... 30 3.2 sp|Q3AM89|PSBA1_SYNSC Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2 sp|Q0I7J2|PSBA1_SYNS3 Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2 sp|A5GTY4|PSBA1_SYNR3 Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2 sp|Q7TTJ7|PSBA1_SYNPX Photosystem Q(B) protein 1 OS=Synechococcu... 30 3.2 sp|P15191|PSBA_PROHO Photosystem Q(B) protein OS=Prochlorothrix ... 30 4.2 sp|Q3AYB8|PSBA1_SYNS9 Photosystem Q(B) protein 1 OS=Synechococcu... 30 4.2 sp|P51759|PSBA_CYAA5 Photosystem Q(B) protein OS=Cyanothece (str... 30 5.5 sp|Q10VK7|PSBA2_TRIEI Photosystem Q(B) protein 2 OS=Trichodesmiu... 30 5.5 sp|P16033|PSBA2_SYNY3 Photosystem Q(B) protein 2 OS=Synechocysti... 30 5.5 sp|Q11A00|PSBA1_TRIEI Photosystem Q(B) protein 1 OS=Trichodesmiu... 30 5.5 sp|A5GIM7|PSBA1_SYNPW Photosystem Q(B) protein 1 OS=Synechococcu... 30 5.5 sp|Q46JV2|PSBA_PROMT Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A2BP21|PSBA_PROMS Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|Q7V365|PSBA_PROMP Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|Q31A92|PSBA_PROM9 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A2BUK1|PSBA_PROM5 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A8G5N5|PSBA_PROM2 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A2C057|PSBA_PROM1 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A3PAU3|PSBA_PROM0 Photosystem Q(B) protein OS=Prochlorococcus... 29 7.1 sp|A5GTY5|PSBA2_SYNR3 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1 sp|Q5N4D2|PSBA2_SYNP6 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1 sp|B1XMC3|PSBA2_SYNP2 Photosystem Q(B) protein 2 OS=Synechococcu... 29 7.1
>sp|Q3AKT2|PSBA2_SYNSC Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9605) GN=psbA3 PE=3 SV=1 Length = 358
Score = 34.3 bits (77), Expect = 0.22 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 96 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 126
>sp|Q7U669|PSBA2_SYNPX Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain WH8102) GN=psbA2 PE=3 SV=1 Length = 358
Score = 34.3 bits (77), Expect = 0.22 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 96 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 126
>sp|Q96Q06|K1881_HUMAN Protein KIAA1881 OS=Homo sapiens GN=KIAA1881 PE=2 SV=2 Length = 1357
Score = 31.6 bits (70), Expect = 1.4 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = -3
Query: 267 ALRKDKSQGSRVKTSHCGLKRSIHICQNAIMETCQGPRAKAQGPIGR 127 A+++++ G V + CGL R +H + ++ + QG A+ Q P+GR Sbjct: 1246 AVQEERDAG--VLSRVCGLLRQLHTAYSGLVSSLQGLPAELQQPVGR 1290
>sp|Q7U4Z3|PSBA3_SYNPX Photosystem Q(B) protein 3 OS=Synechococcus sp. (strain WH8102) GN=psbA3 PE=3 SV=1 Length = 359
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127
>sp|Q3AV15|PSBA2_SYNS9 Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9902) GN=psbA2 PE=3 SV=1 Length = 359
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127
>sp|Q0I912|PSBA2_SYNS3 Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain CC9311) GN=psbA2 PE=3 SV=2 Length = 359
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127
>sp|A5GJU5|PSBA2_SYNPW Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain WH7803) GN=psbA2 PE=3 SV=1 Length = 358
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 96 WEAASLDEWLYNGGPYQLVVFHFLIGISAYM 126
>sp|Q7NJX5|PSBA2_GLOVI Photosystem Q(B) protein 2 OS=Gloeobacter violaceus GN=psbA2 PE=3 SV=1 Length = 360
Score = 30.4 bits (67), Expect = 3.2 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AY+ Sbjct: 97 WEAASMDEWLYNGGPYQLVVFHFLIGIFAYL 127
>sp|Q3AM89|PSBA1_SYNSC Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9605) GN=psbA1 PE=3 SV=1 Length = 359
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127
>sp|Q0I7J2|PSBA1_SYNS3 Photosystem Q(B) protein 1 OS=Synechococcus sp. (strain CC9311) GN=psbA1 PE=3 SV=1 Length = 359
Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L FH+ GI AYM Sbjct: 97 WEAASLDEWLYNGGPFQLVVFHFLIGIYAYM 127
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4Z054 |
Definition |
tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment) OS=uncultured bacterium |
Align length |
31 |
Score (bit) |
35.4 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920247|Adiantum capillus-veneris mRNA, clone: YMU001_000134_G05. (431 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment) OS=u... 35 1.4 tr|A6YDZ1|A6YDZ1_9ZZZZ Photosynthetic reaction center protein (F... 35 1.9 tr|B4YZZ7|B4YZZ7_9VIRU Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|A6YDU9|A6YDU9_9ZZZZ Photosynthetic reaction center protein (F... 34 3.2 tr|Q5Y1D0|Q5Y1D0_9SYNE Photosystem II D1 protein (Fragment) OS=u... 34 3.2 tr|Q5Y1C8|Q5Y1C8_9SYNE Photosystem II D1 protein (Fragment) OS=u... 34 3.2 tr|Q1HLV9|Q1HLV9_SYNPZ Photosystem D1 core reaction center prote... 34 3.2 tr|Q1HLV8|Q1HLV8_9SYNE Photosystem D1 core reaction center prote... 34 3.2 tr|B4Z111|B4Z111_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z105|B4Z105_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0K2|B4Z0K2_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0K0|B4Z0K0_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0J9|B4Z0J9_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0C9|B4Z0C9_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0C7|B4Z0C7_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0C6|B4Z0C6_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0C1|B4Z0C1_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0B6|B4Z0B6_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z0B5|B4Z0B5_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z053|B4Z053_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z050|B4Z050_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z049|B4Z049_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z048|B4Z048_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4Z047|B4Z047_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZY3|B4YZY3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZY2|B4YZY2_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZJ3|B4YZJ3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZI7|B4YZI7_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZI4|B4YZI4_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2 tr|B4YZI3|B4YZI3_9BACT Photosystem II protein D1 (Fragment) OS=u... 34 3.2
>tr|B4Z054|B4Z054_9BACT Photosystem II protein D1 (Fragment) OS=uncultured bacterium GN=psbA PE=4 SV=1 Length = 249
Score = 35.4 bits (80), Expect = 1.4 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W S GP+ L CFH+ GI AYM Sbjct: 4 WEAASLDEWLYSGGPYQLVCFHFLIGISAYM 34
>tr|A6YDZ1|A6YDZ1_9ZZZZ Photosynthetic reaction center protein (Fragment) OS=uncultured marine organism GN=psbA PE=4 SV=1 Length = 233
Score = 35.0 bits (79), Expect = 1.9 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+AGS W + GP+ L CFH+ GI +Y+ Sbjct: 5 WEAGSLDEWLYNGGPYQLVCFHFLIGIFSYL 35
>tr|B4YZZ7|B4YZZ7_9VIRU Photosystem II protein D1 (Fragment) OS=uncultured marine virus GN=psbA PE=4 SV=1 Length = 212
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34
>tr|A6YDU9|A6YDU9_9ZZZZ Photosynthetic reaction center protein (Fragment) OS=uncultured marine organism GN=psbA PE=4 SV=1 Length = 233
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 5 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 35
>tr|Q5Y1D0|Q5Y1D0_9SYNE Photosystem II D1 protein (Fragment) OS=uncultured Synechococcus sp. GN=psbA PE=3 SV=1 Length = 283
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 40 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 70
>tr|Q5Y1C8|Q5Y1C8_9SYNE Photosystem II D1 protein (Fragment) OS=uncultured Synechococcus sp. GN=psbA PE=3 SV=1 Length = 283
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 40 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 70
>tr|Q1HLV9|Q1HLV9_SYNPZ Photosystem D1 core reaction center protein (Fragment) OS=Synechococcus sp. (strain WH8103) GN=psbA PE=3 SV=1 Length = 243
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 14 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 44
>tr|Q1HLV8|Q1HLV8_9SYNE Photosystem D1 core reaction center protein (Fragment) OS=Synechococcus sp. WH 8012 GN=psbA PE=3 SV=1 Length = 243
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 14 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 44
>tr|B4Z111|B4Z111_9BACT Photosystem II protein D1 (Fragment) OS=uncultured bacterium GN=psbA PE=4 SV=1 Length = 249
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34
>tr|B4Z105|B4Z105_9BACT Photosystem II protein D1 (Fragment) OS=uncultured bacterium GN=psbA PE=4 SV=1 Length = 249
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = +1
Query: 112 WQAGSSANWSLSLGPWALTCFHY--GILAYM 198 W+A S W + GP+ L CFH+ GI AYM Sbjct: 4 WEAASLDEWLYNGGPYQLVCFHFLIGISAYM 34
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