BP920206 |
Clone id |
YMU001_000134_C09 |
Library |
YMU01 |
Length |
332 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000134_C09. |
Accession |
BP920206 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GAGATATTACCTGCAGGTACTCAGAGACCCCACTTGAAATTGAAAATTTCTCTACATTCT CACTTGGACTATCTGATTCCTGCACAAGCACCCCATCGCCTCTCTTTGTAGCTCCATCTT CCAAGCTCTTTTCAGCGCTAGAAAAGTCATCCTTACAGGGAACCCATCCTTTGACAGTGC AAGCATACTCAGGATCTGTCTCAAGATTGGATCGACTATATATCTCACAAATGCGTGCTG TACTTGAAGTGTACACACTCTGCACATGGCATAGCCTTTGCTGGAACTTAACTGTAATTT CACATGGAGAGGGTTCTGCAGGGGGGACCAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P44398 |
Definition |
sp|P44398|XYLA_HAEIN Xylose isomerase OS=Haemophilus influenzae |
Align length |
56 |
Score (bit) |
32.0 |
E-value |
0.99 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920206|Adiantum capillus-veneris mRNA, clone: YMU001_000134_C09. (332 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P44398|XYLA_HAEIN Xylose isomerase OS=Haemophilus influenzae ... 32 0.99 sp|A5UIN7|XYLA_HAEIG Xylose isomerase OS=Haemophilus influenzae ... 32 0.99 sp|A5UCZ3|XYLA_HAEIE Xylose isomerase OS=Haemophilus influenzae ... 32 0.99 sp|Q4QLI2|XYLA_HAEI8 Xylose isomerase OS=Haemophilus influenzae ... 32 0.99 sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 5... 31 2.2 sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsi... 31 2.2 sp|Q65PY0|XYLA_MANSM Xylose isomerase OS=Mannheimia succinicipro... 30 2.9 sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Dros... 30 3.8 sp|P52346|EXON_HHV7J Alkaline exonuclease OS=Human herpesvirus 7... 30 3.8 sp|Q12053|PKSL1_ASPPA Aflatoxin biosynthesis polyketide synthase... 30 4.9 sp|Q8ZL90|XYLA_SALTY Xylose isomerase OS=Salmonella typhimurium ... 29 6.4 sp|Q7C637|XYLA_SALTI Xylose isomerase OS=Salmonella typhi GN=xyl... 29 6.4 sp|A9MUV0|XYLA_SALPB Xylose isomerase OS=Salmonella paratyphi B ... 29 6.4 sp|Q5PLM6|XYLA_SALPA Xylose isomerase OS=Salmonella paratyphi A ... 29 6.4 sp|Q57IG0|XYLA_SALCH Xylose isomerase OS=Salmonella choleraesuis... 29 6.4 sp|Q12397|STCA_EMENI Putative sterigmatocystin biosynthesis poly... 29 6.4 sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabi... 29 6.4 sp|Q69ZS0|PZRN3_MOUSE PDZ domain-containing RING finger protein ... 29 6.4 sp|P34657|YOTB_CAEEL Uncharacterized protein ZK632.12 OS=Caenorh... 29 8.4 sp|A6VLM8|XYLA_ACTSZ Xylose isomerase OS=Actinobacillus succinog... 29 8.4 sp|Q9HJM5|SYE_THEAC Glutamyl-tRNA synthetase OS=Thermoplasma aci... 29 8.4 sp|Q9PWH2|FZD10_CHICK Frizzled-10 OS=Gallus gallus GN=FZD10 PE=2... 29 8.4 sp|Q9W742|FZ10B_XENLA Frizzled-10-B OS=Xenopus laevis GN=fzd10-B... 29 8.4 sp|Q9DEB5|FZ10A_XENLA Frizzled-10-A OS=Xenopus laevis GN=fzd10-A... 29 8.4
>sp|P44398|XYLA_HAEIN Xylose isomerase OS=Haemophilus influenzae GN=xylA PE=3 SV=1 Length = 439
Score = 32.0 bits (71), Expect = 0.99 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3
Query: 129 FSALEKSSLQG---THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWN 287 F +EK S +G T+P + Y + L + +R + C WH+ CWN Sbjct: 5 FDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAV-----CYWHTFCWN 55
>sp|A5UIN7|XYLA_HAEIG Xylose isomerase OS=Haemophilus influenzae (strain PittGG) GN=xylA PE=3 SV=1 Length = 439
Score = 32.0 bits (71), Expect = 0.99 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3
Query: 129 FSALEKSSLQG---THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWN 287 F +EK S +G T+P + Y + L + +R + C WH+ CWN Sbjct: 5 FDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAV-----CYWHTFCWN 55
>sp|A5UCZ3|XYLA_HAEIE Xylose isomerase OS=Haemophilus influenzae (strain PittEE) GN=xylA PE=3 SV=1 Length = 439
Score = 32.0 bits (71), Expect = 0.99 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3
Query: 129 FSALEKSSLQG---THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWN 287 F +EK S +G T+P + Y + L + +R + C WH+ CWN Sbjct: 5 FDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAV-----CYWHTFCWN 55
>sp|Q4QLI2|XYLA_HAEI8 Xylose isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=xylA PE=3 SV=1 Length = 439
Score = 32.0 bits (71), Expect = 0.99 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3
Query: 129 FSALEKSSLQG---THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWN 287 F +EK S +G T+P + Y + L + +R + C WH+ CWN Sbjct: 5 FDKIEKISFEGEKSTNPFAFKHYDANQVILGKTMAEHLRLAV-----CYWHTFCWN 55
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1 Length = 765
Score = 30.8 bits (68), Expect = 2.2 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3
Query: 162 THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWNLTVIS 302 TH L V+A SGS R++++YI+ V E Y W WN IS Sbjct: 6 THELEVEAESGS--RMEKVYIAVGNDVQEGYKTIHWALKKWNNIPIS 50
>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1 Length = 189
Score = 30.8 bits (68), Expect = 2.2 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 3/109 (2%) Frame = -2
Query: 322 PAEPSPCEITVKFQQRLCHVQSVYTSSTARICEIYSRSN-LETDPEYACTVKGWVPCKDD 146 P + CE K + C+ + ST EI S S ET P + GW P + Sbjct: 17 PGTDNVCE--AKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIVGWPPVRSY 74
Query: 145 FSSAEKSLEDGATKRGDGVLVQESDSPSENVEKFSIS--SGVSEYLQVI 5 + +S ++ + G G+ V+ S + + K +S G SE L+ + Sbjct: 75 RKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 123
>sp|Q65PY0|XYLA_MANSM Xylose isomerase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=xylA PE=3 SV=1 Length = 437
Score = 30.4 bits (67), Expect = 2.9 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3
Query: 129 FSALEKSSLQG---THPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWN 287 F +EK +G T+P + Y+ + L + +R + C WH+ CWN Sbjct: 5 FDKIEKVKYEGADSTNPFAYKHYNANEVILGKTMAEHLRLAV-----CYWHTFCWN 55
>sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Drosophila melanogaster GN=hiw PE=1 SV=2 Length = 5233
Score = 30.0 bits (66), Expect = 3.8 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 12/62 (19%) Frame = -3
Query: 276 GYAMCRVCTLQVQHAFVRYIVDPI--LRQILSMLALSK----------DGFPVRMTFLAL 133 G+++C +C +QH + I++PI L+Q + AL + D V MT LA+ Sbjct: 5034 GFSLCPICKADIQHPLLSDILEPINGLKQDVKRKALMRIKYEGVVKDTDSKNVNMTQLAM 5093
Query: 132 KR 127 R Sbjct: 5094 DR 5095
>sp|P52346|EXON_HHV7J Alkaline exonuclease OS=Human herpesvirus 7 (strain JI) GN=U70 PE=3 SV=1 Length = 480
Score = 30.0 bits (66), Expect = 3.8 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +2
Query: 77 FLHKHPIASLCSSIFQALFSARKVILTGNPSFDSASILRICL 202 F+ HPI ++ + SAR+ ++T NP +DS R CL Sbjct: 259 FILSHPIPAIEYRENGKMPSAREYLITNNPLYDSGKKRRACL 300
>sp|Q12053|PKSL1_ASPPA Aflatoxin biosynthesis polyketide synthase OS=Aspergillus parasiticus GN=pksL1 PE=2 SV=1 Length = 2109
Score = 29.6 bits (65), Expect = 4.9 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +2
Query: 149 ILTGNPSFDSASILRICLKIGSTIYLTNACCT*SVHTLHMA*PLLELNCNFTWRGFC 319 I GN F I C + Y + C+ S+ +H+A CN WRG C Sbjct: 514 ITGGNRGFIPGRI-NFCFEFAGPSYTNDTACSSSLAAIHLA-------CNSLWRGDC 562
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7Q281 |
Definition |
tr|A7Q281|A7Q281_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
107 |
Score (bit) |
55.8 |
E-value |
1.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920206|Adiantum capillus-veneris mRNA, clone: YMU001_000134_C09. (332 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7Q281|A7Q281_VITVI Chromosome chr13 scaffold_45, whole genom... 56 1e-06 tr|Q9FGV5|Q9FGV5_ARATH Genomic DNA, chromosome 5, TAC clone:K16F... 49 1e-04 tr|Q7XII5|Q7XII5_ORYSJ Os07g0569000 protein OS=Oryza sativa subs... 47 4e-04 tr|A5B1E2|A5B1E2_VITVI Putative uncharacterized protein OS=Vitis... 42 0.020 tr|B8B7I2|B8B7I2_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.38 tr|A3BLB3|A3BLB3_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.38 tr|A9T5N9|A9T5N9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.65 tr|Q2ITY7|Q2ITY7_RHOP2 ABC transporter-like OS=Rhodopseudomonas ... 35 1.5 tr|A7E6D0|A7E6D0_SCLS1 Putative uncharacterized protein OS=Scler... 35 2.5 tr|B3W9W0|B3W9W0_LACCB Lincomycin resistance protein LmrB OS=Lac... 34 3.2 tr|A3Y5Z4|A3Y5Z4_9GAMM Putative uncharacterized protein OS=Marin... 34 3.2 tr|A1DH82|A1DH82_NEOFI Mob1 family protein OS=Neosartorya fische... 33 5.5 tr|B3NAT7|B3NAT7_DROER GG24445 OS=Drosophila erecta GN=GG24445 P... 33 7.2 tr|A4HM87|A4HM87_LEIBR Proteophosphoglycan ppg4 OS=Leishmania br... 33 7.2 tr|A2EDB4|A2EDB4_TRIVA Putative uncharacterized protein OS=Trich... 33 7.2 tr|Q4X100|Q4X100_ASPFU Mob1 family protein OS=Aspergillus fumiga... 33 7.2 tr|B0XSJ9|B0XSJ9_ASPFC Mob1 family protein OS=Aspergillus fumiga... 33 7.2 tr|Q035Z7|Q035Z7_LACC3 Permease of the major facilitator superfa... 33 9.4
>tr|A7Q281|A7Q281_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028775001 PE=4 SV=1 Length = 742
Score = 55.8 bits (133), Expect = 1e-06 Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Frame = -2
Query: 325 PPAEPSPCEITVKFQQRLCHVQSVYTSSTARICEIYSRSNLETDPEYACTVKGWVPCKDD 146 P A+ +PCEI + F Q+ V+ VY STAR+ E+Y +L++ EY CTV+ + KD+ Sbjct: 19 PSADSAPCEIKISFTQKH-EVRQVYVRSTARVYEMYWAPDLQSINEYLCTVRCSIAAKDE 77
Query: 145 FSSAEKSLEDGATKRGDGVLVQESDSPSENVEK-FSISSGVSEYLQV 8 S +E+ + + +G + EN++ S+SS +++V Sbjct: 78 KSLHATDIEEPVSAKIEG---SDGKPAEENLKNGSSVSSNEDGWVEV 121
>tr|Q9FGV5|Q9FGV5_ARATH Genomic DNA, chromosome 5, TAC clone:K16F13 OS=Arabidopsis thaliana GN=At5g47940 PE=4 SV=1 Length = 749
Score = 48.9 bits (115), Expect = 1e-04 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 20/124 (16%) Frame = -2
Query: 331 LVPPA-EPSPCEITVKFQQRLCHVQSVYTSSTARICEIYSRSNLETDPEYACTVKGWVPC 155 L+PP PCEIT+ F Q ++ +Y S+AR+ E+Y D EY CTV+ V Sbjct: 58 LLPPVPNGEPCEITITFAQEH-ELRQIYIRSSARVYEVYYTKKRRHDKEYLCTVRCGVAI 116
Query: 154 KDD--------FSSAEKSLED-----------GATKRGDGVLVQESDSPSENVEKFSISS 32 +D+ S+ K ++D G T D V V+ SD N EK Sbjct: 117 RDEEVLQIPLTESADSKPVKDLIERKVADNGNGRTSEDDWVEVKASDDSLLNNEKQDFYE 176
Query: 31 GVSE 20 +E Sbjct: 177 ATAE 180
>tr|Q7XII5|Q7XII5_ORYSJ Os07g0569000 protein OS=Oryza sativa subsp. japonica GN=OJ1019_E02.8 PE=4 SV=1 Length = 1099
Score = 47.4 bits (111), Expect = 4e-04 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Frame = -2
Query: 307 PCEITVKFQQRLCHVQSVYTSSTARICEIYSRSN-LETDPEYACTVKGWVPCKDDFSSAE 131 PCE+TV F+ + + VY STARI EIY ++ ++ +Y CTV+ K+ SAE Sbjct: 61 PCEVTVHFRGKY-EIHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAE 119
Query: 130 KSLEDGATKRGDGVLVQESDSPSENVEKFSISSGVSE 20 +S+ ++ S S E S+SS + E Sbjct: 120 ESMPQWSS--------DASTSEKHEHETKSVSSSIDE 148
>tr|A5B1E2|A5B1E2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018965 PE=4 SV=1 Length = 1856
Score = 41.6 bits (96), Expect = 0.020 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -2
Query: 265 VQSVYTSSTARICEIYSRSNLETDPEYACTVKGWVPCKDDFSSAEKSLEDGATKRGDGVL 86 V+ VY STAR+ E+Y +L++ EY CTV+ + KD+ S +E+ + +G Sbjct: 1206 VRQVYVRSTARVYEMYWAPDLQSINEYLCTVRCXIAAKDEKSLHATDIEEPVSAXIEG-- 1263
Query: 85 VQESDSPSENVEK-FSISSGVSEYLQV 8 + EN++ S+SS +++V Sbjct: 1264 -SDGKPAEENLKNGSSVSSNEDGWVEV 1289
>tr|B8B7I2|B8B7I2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26535 PE=4 SV=1 Length = 1131
Score = 37.4 bits (85), Expect = 0.38 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = -2
Query: 265 VQSVYTSSTARICEIYSRSN-LETDPEYACTVKGWVPCKDDFSSAEKSLEDGATKRGDGV 89 + VY STARI EIY ++ ++ +Y CTV+ K+ SAE+S+ ++ Sbjct: 126 IHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAEESMPQWSS------ 179
Query: 88 LVQESDSPSENVEKFSISSGVSE 20 S S E S+SS + E Sbjct: 180 --DASTSEKHEHETKSVSSSIDE 200
>tr|A3BLB3|A3BLB3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_023835 PE=4 SV=1 Length = 1140
Score = 37.4 bits (85), Expect = 0.38 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = -2
Query: 265 VQSVYTSSTARICEIYSRSN-LETDPEYACTVKGWVPCKDDFSSAEKSLEDGATKRGDGV 89 + VY STARI EIY ++ ++ +Y CTV+ K+ SAE+S+ ++ Sbjct: 115 IHRVYVRSTARIYEIYYTTDPKDSSKDYLCTVRCGPAVKEPLPSAEESMPQWSS------ 168
Query: 88 LVQESDSPSENVEKFSISSGVSE 20 S S E S+SS + E Sbjct: 169 --DASTSEKHEHETKSVSSSIDE 189
>tr|A9T5N9|A9T5N9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168206 PE=4 SV=1 Length = 336
Score = 36.6 bits (83), Expect = 0.65 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = -2
Query: 244 STARICEIYSRSNLETDPEYACTVKGWVPCKDD 146 STAR CE Y ++ ETD EY CT +G + ++ Sbjct: 108 STARTCEAYRQNEGETDAEYLCTARGQLETNEE 140
>tr|Q2ITY7|Q2ITY7_RHOP2 ABC transporter-like OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_3628 PE=4 SV=1 Length = 368
Score = 35.4 bits (80), Expect = 1.5 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +3
Query: 153 LQGTHPLTVQAYSGSVSRLDRLYISQMRAVLEVYTLCTWHSLCWNL---TVISHG 308 L+G HP T +G + +L+R +++AVL +W LCW L T++SHG Sbjct: 236 LRGCHPATEAVEAGWMDKLER----RLQAVLR-----SWRDLCWQLVDMTLVSHG 281
>tr|A7E6D0|A7E6D0_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_00855 PE=4 SV=1 Length = 369
Score = 34.7 bits (78), Expect = 2.5 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +3
Query: 18 YSETPLEIENFSTFSLGLSDSCTSTPSPLFVAPSSKLFSALEKSSLQGTHPLTVQAYSGS 197 Y+ P+ + FS+G+ +C T PLF +K EK + G P TV +Y G Sbjct: 244 YTMVPIVLVADLEFSIGVIAACIPTVMPLFTGDKAKKAKTYEK--MYGAKPRTVGSYGGK 301
Query: 198 VSRLDRLYISQMR 236 + ++ ++R Sbjct: 302 FRKAAKVTDIELR 314
>tr|B3W9W0|B3W9W0_LACCB Lincomycin resistance protein LmrB OS=Lactobacillus casei (strain BL23) GN=lmrB-2 PE=4 SV=1 Length = 484
Score = 34.3 bits (77), Expect = 3.2 Identities = 20/54 (37%), Positives = 27/54 (50%) Frame = +2
Query: 62 TWTI*FLHKHPIASLCSSIFQALFSARKVILTGNPSFDSASILRICLKIGSTIY 223 TW F PIA+ + A++S RKV+ T NP D SI+ L G +Y Sbjct: 167 TWRALFAVIMPIAA--GVVLLAIYSMRKVLPTSNPKIDIPSIIASTLGFGGLLY 218
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