BP920161
Clone id YMU001_000133_G06
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTATGTAGTAGATAAAAACCCACTTCAATAAGCCAACAATAACTAAAAAAATATGGTAC
TTAGAATGCATAGACAATGGATCAGAAGTTGATCCTACAACACACTCTACTTGGAACTCT
CAAGATCCAAAGTCCAACACATCGAACATTGTGACCGAGGCGTCGAGGTGAGTCACCCAA
AGAATAGATTCTAAACATCTATTCATTCGCTCCATAGGGACCGTATGAAAAGTTGCAATT
GAGAGGCCGTTGCATACCTAACTCTCATACAGTGGATCGCATATCATCTATATCAAACTC
TATGTGATAATAACCTACAACACTTTTAAAATATCGTGCTTCATATAATGCCAAGACAGC
ATGTCTGCAATAATATTGAAGCCTGCAATGAAGATAACAACCAACCCATTCAGGCATAAA
AAGTAACAACACATTTAGCATCATATAGATTCAAGTTCAAGCTATACGCTCCGAAGAATC
TCAAAATCCTCAATAATACGAACAATATCCTAAGCATGTGCATTGACCCTTCCACAATGG
AG
■■Homology search results ■■ -
sp_hit_id Q54N50
Definition sp|Q54N50|DCTN2_DICDI Dynactin subunit 2 OS=Dictyostelium discoideum
Align length 39
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920161|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G06.
(542 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54N50|DCTN2_DICDI Dynactin subunit 2 OS=Dictyostelium discoi... 32 2.0

>sp|Q54N50|DCTN2_DICDI Dynactin subunit 2 OS=Dictyostelium
discoideum GN=dynB PE=3 SV=1
Length = 430

Score = 32.0 bits (71), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1

Query: 85 EVDPTTHSTWNSQDPKSNTSNIVTEASR*VTQRIDSKHL 201
+VDP+ T+ + DP + SN+ E+S V + ID L
Sbjct: 15 DVDPSQQDTFETPDPPESISNLADESSELVNESIDRSSL 53


tr_hit_id B6MKJ1
Definition tr|B6MKJ1|B6MKJ1_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 54
Score (bit) 34.7
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920161|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_G06.
(542 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6MKJ1|B6MKJ1_BRAFL Putative uncharacterized protein OS=Branc... 35 3.3
tr|Q1NG15|Q1NG15_9SPHN Putative uncharacterized protein OS=Sphin... 34 4.4

>tr|B6MKJ1|B6MKJ1_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_83559 PE=4 SV=1
Length = 236

Score = 34.7 bits (78), Expect = 3.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3

Query: 450 IYMMLNVLLLFMPEWVGCYLHCRLQYYCRHAVL--ALYEARYFKSVVGYYHIEF 295
+Y +L LL ++ ++ YL C LQYY ++ +L LY YF Y++++
Sbjct: 99 LYFVLYYLLYYLQYYLQYYLQCYLQYYLQYYLLYFVLYYLLYFLQYYLQYYLQY 152


>tr|Q1NG15|Q1NG15_9SPHN Putative uncharacterized protein
OS=Sphingomonas sp. SKA58 GN=SKA58_06265 PE=4 SV=1
Length = 684

Score = 34.3 bits (77), Expect = 4.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1

Query: 22 HFNKPTITKKIWYLECIDNGSEVDPTTHSTWNSQDPKSNTSNIV 153
+FN P + +L +NG V P+ H TWN + PK + V
Sbjct: 211 NFNFPRYSLDASFLRAYENGKPVVPSDHLTWNPRPPKKDELTFV 254