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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920148
Clone id YMU001_000133_F02
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000133_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGATGATGATGGTGGGATCGTGTCGGCCATATCTATCTCTCTTAGCATCTCCTCTGAAG
TATCATAAAACACTGCCTGGTGATGGGCAGTCCTAGCATTGAAGTCCCCAAGGATGATAA
TGTCACCGTCCCTAGAGAACTCCCATATGTCATCATCCAAAATAGAGAAAGGGGACTGTC
CTCTGGGTGGTGCATAAACTGATGTACTCGAGGAAAAGTAACAAATAGCTAGATAGAGGT
ATCTGTCTGTCTCTGCTTTCAGTCTCACCCACATGTACCTAGCCTGCTCGTCCCTGCGGG
CTATATGTATTAGTGGCTGTAGATCCTCTCTAAATAACACTGCCACTCCTCCCGAGCCCC
GCCCTCTGTGCTCTGAGCGTGTCTCCTGTCTGTAGGCTCTCTCCCACCTATATCCACTGA
TGTGAGGCA
■■Homology search results ■■ -
sp_hit_id Q9UTK1
Definition sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16, mitochondrial OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 31.2
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920148|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_F02.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16...    31   1.8  
sp|O86262|TPMT_PSESJ Thiopurine S-methyltransferase OS=Pseudomon...    29   7.0  
sp|P16163|URIC_DROME Uricase OS=Drosophila melanogaster GN=Uro P...    29   9.1  
sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Ory...    29   9.1  
sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing prot...    29   9.3  

>sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16,
           mitochondrial OS=Schizosaccharomyces pombe GN=cox16 PE=2
           SV=1
          Length = 113

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 271 WVRLKAETDRYLYLAICYFSSSTSVYA--PPRGQSPFSILDDDIWEFSRDGDIIIL 110
           W RL+A+   ++Y+ + + SS   V++   P  Q  F+  D+ +   SRD ++ I+
Sbjct: 9   WYRLQAKKSPFIYVGLPFLSSVLLVWSCLIPISQVKFNRRDEQVKSLSRDAELDII 64


>sp|O86262|TPMT_PSESJ Thiopurine S-methyltransferase OS=Pseudomonas
           syringae pv. pisi GN=tpm PE=1 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 196 YAPPRGQSPFSILDDDIWEFSRDGDIIILGDFNARTAH---HQAVFYDTSEEMLREIDMA 26
           Y   RG+ P      D   ++  G  I  GDF A TA    H A FYD +  +    DM 
Sbjct: 75  YFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR 134

Query: 25  D 23
           +
Sbjct: 135 E 135


>sp|P16163|URIC_DROME Uricase OS=Drosophila melanogaster GN=Uro PE=1
           SV=2
          Length = 352

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 424 HISGYRWERAYRQETRSEHRGRGSGGV 344
           H+  Y W+R  ++ETR+   G+   GV
Sbjct: 129 HVEAYPWQRVCQEETRTNVNGKCENGV 155


>sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Oryza
           sativa subsp. japonica GN=ROC4 PE=2 SV=2
          Length = 813

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -3

Query: 358 GSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSSTSVYAPPRG 179
           G GG A+L    L+        +   R    RLK E  R   LA  +   S SV APP+ 
Sbjct: 196 GCGGPAMLGEVSLE--------EHHLRVENARLKDELSRVCALAAKFLGKSISVMAPPQM 247

Query: 178 QSPFSI 161
             P  +
Sbjct: 248 HQPHPV 253


>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1
            OS=Homo sapiens GN=BAHCC1 PE=1 SV=3
          Length = 2608

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 429  CLTSVDIGGREPTDRRHAQSTEGGAREE 346
            C   ++ GG E T + H  ST+GGAREE
Sbjct: 1159 CAALLEAGGPEATGQAH--STQGGAREE 1184
tr_hit_id A7SDI1
Definition tr|A7SDI1|A7SDI1_NEMVE Predicted protein OS=Nematostella vectensis
Align length 105
Score (bit) 49.7
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920148|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_F02.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SDI1|A7SDI1_NEMVE Predicted protein OS=Nematostella vectens...    50   7e-05
tr|A9SK31|A9SK31_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|Q08525|Q08525_CHICK Putative uncharacterized protein OS=Gallu...    40   0.045
tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    37   0.65 
tr|Q5UYT7|Q5UYT7_HALMA Putative uncharacterized protein OS=Haloa...    36   0.85 
tr|B1L7N7|B1L7N7_KORCO Putative uncharacterized protein OS=Korar...    36   1.1  
tr|O42110|O42110_9SAUR ORF2 OS=Platemys spixii PE=4 SV=2               35   1.4  
tr|Q76IM3|Q76IM3_TETNG Pol-like protein OS=Tetraodon nigroviridi...    35   1.9  
tr|B1L6R1|B1L6R1_KORCO Putative uncharacterized protein OS=Korar...    35   1.9  
tr|B1DHF3|B1DHF3_9BACL Putative uncharacterized protein OS=Paeni...    34   4.2  
tr|O00372|O00372_HUMAN Putative p150 OS=Homo sapiens PE=4 SV=1         33   5.5  
tr|Q76IL9|Q76IL9_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    33   7.2  
tr|Q384V8|Q384V8_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.4  
tr|B4IGI0|B4IGI0_DROSE GM11577 OS=Drosophila sechellia GN=GM1157...    33   9.4  
tr|Q96ZC2|Q96ZC2_SULTO 241aa long hypothetical exodeoxyribonucle...    33   9.4  
tr|B5MF73|B5MF73_9CREN Thermostable exonuclease III OS=Sulfolobu...    33   9.4  

>tr|A7SDI1|A7SDI1_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g210604 PE=4 SV=1
          Length = 1079

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
 Frame = -3

Query: 388 QETRSEHRGRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAET---DRYLYLAICY 218
           ++  ++  GR SGG+ V         + + ++++   Y+W +L       D  +++  CY
Sbjct: 268 KKINTKKAGRSSGGILVAAASSFSRSVSVFKQEKD--YIWCKLDKRLLSLDEDIFICACY 325

Query: 217 FSSSTSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFNARTAH 83
              S S Y        FS L++DI  F   G I++LGD NART +
Sbjct: 326 IPPSNSPYFD---DEVFSNLENDIALFKGHGKILLLGDMNARTGN 367


>tr|A9SK31|A9SK31_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229896 PE=4 SV=1
          Length = 683

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
 Frame = -3

Query: 379 RSEHRGRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAET--DRYLYLAICYFSSS 206
           RS+  G   GGVA  ++ D    I   + D Q  Y+W++L      ++ L+ A+CYF   
Sbjct: 72  RSDKAGN-RGGVACYYKHDYSFHILGYKIDPQGHYLWLKLDKALGFEKDLFAAVCYFPPI 130

Query: 205 TSVYAPPRGQ----SPFSILDDDIWEFSRD---GDIIILGDFNARTAHHQA 74
           +S     R +     P+  L +DI+  S+     + +++GDFN+R    QA
Sbjct: 131 SSSAYDGRDRLEPSFPYKSLSNDIFSLSKKKNARNFLVVGDFNSRIGDAQA 181


>tr|Q08525|Q08525_CHICK Putative uncharacterized protein OS=Gallus
           gallus PE=4 SV=2
          Length = 990

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = -3

Query: 379 RSEHRGRGSGGVAVLFRE--DLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSS 206
           R + RGR  GGVA+  +E  D + L  +    EQ   +WVR++  T++   +   Y+   
Sbjct: 116 RRDRRGRKGGGVALYVKEWIDCEEL-PLRNSQEQVESLWVRIRDGTNKGQLVIGVYYR-- 172

Query: 205 TSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFN 98
                P +G++        +WE S    ++++GDFN
Sbjct: 173 ----PPDQGEAVDEAFLLQMWEASCSQALVLVGDFN 204


>tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4
           SV=1
          Length = 1329

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = -3

Query: 406 WERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAETDRYLYLA 227
           W R Y       H    SGGVAVLF ++  P  +        R + +R + E   ++++ 
Sbjct: 83  WAREYNGLPILSHLSSVSGGVAVLFSKNFIPCSYQVEEIINGRLLKIRAQFENSVFVFI- 141

Query: 226 ICYFSSSTSVYAPPRGQSPFSILD--DDIWEFSRDGDIIIL-GDFN 98
                   SVY P R       L+   ++       D++IL GDFN
Sbjct: 142 --------SVYVPTRAIERMCFLETLSNVLANCNTEDVLILGGDFN 179


>tr|Q5UYT7|Q5UYT7_HALMA Putative uncharacterized protein
           OS=Haloarcula marismortui GN=rrnAC2810 PE=4 SV=1
          Length = 329

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -3

Query: 172 PFSILDDDIWEFSRDGDIIILGDFNARTAH------HQAVFYDTSEEMLREIDMADTIPP 11
           P  + +D I E   DGD+I LGD +  T H      HQ VFYD + + +   D A    P
Sbjct: 158 PIPVAEDRI-ETLTDGDVIDLGDHSLETLHAPGHAPHQVVFYDPAIDGVFTADAAGIYNP 216

Query: 10  SS 5
           S+
Sbjct: 217 ST 218


>tr|B1L7N7|B1L7N7_KORCO Putative uncharacterized protein
           OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_0104
           PE=4 SV=1
          Length = 414

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -3

Query: 349 GVAVLFREDLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSST 203
           GVAV+  EDL+P+ H   + E    +W   K + DR++ ++I Y+ S T
Sbjct: 86  GVAVILSEDLRPICHAKLKHE----LWRAEKYDEDRFVAMSIWYWYSET 130


>tr|O42110|O42110_9SAUR ORF2 OS=Platemys spixii PE=4 SV=2
          Length = 963

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
 Frame = -3

Query: 379 RSEHRGRGSGGVAVLFREDLQPL-IHIARRDEQARYMWVRLKAETDR-YLYLAICYFSSS 206
           R + +GR  GGVA+  RE      +     D     +WV+L+++ ++  + + +CY    
Sbjct: 97  RKDRQGRKGGGVALYVREHYDXSELQCETGDTPVESLWVKLRSKNNKGDVVVGVCY---- 152

Query: 205 TSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFN-------ARTAHHQ 77
                P +           + + S   D+I++GDFN       + TA H+
Sbjct: 153 ---RXPDQEDEVDEAFFSQLGKVSSSQDLILMGDFNHPDICWKSNTAEHK 199


>tr|Q76IM3|Q76IM3_TETNG Pol-like protein OS=Tetraodon nigroviridis
           GN=ORF2 PE=4 SV=1
          Length = 1302

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
 Frame = -3

Query: 406 WERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKA--ETDRYLY 233
           W RA+  E    H    SGGV VLF     P+      DE    + +++KA  E  + ++
Sbjct: 59  WRRAFNGEAILSHGSSLSGGVGVLFARRFLPISFTT--DEIIPGVLLKVKAVFENVKLVF 116

Query: 232 LAICYFSSSTSVYAPP---RGQSPFSILDDDIWEFSRDGDIIILGDFN 98
           L         SVYAP       +  +IL D I   + +G + + GDFN
Sbjct: 117 L---------SVYAPTNQVERMAFLNILSDCIANSADEGFMFLGGDFN 155


>tr|B1L6R1|B1L6R1_KORCO Putative uncharacterized protein
           OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1394
           PE=3 SV=1
          Length = 431

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 364 GRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSST 203
           G    GVAV+  EDL+P+ H   + +    +W   K + DR++ ++I Y+ S T
Sbjct: 92  GYNDEGVAVILSEDLRPICHAKLKHK----LWRAEKYDEDRFVAMSIWYWYSET 141


>tr|B1DHF3|B1DHF3_9BACL Putative uncharacterized protein
           OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_4554 PE=4 SV=1
          Length = 173

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = -3

Query: 268 VRLKAETDRYLYLAICYFSSSTSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFNART 89
           + L A+ +   +  I +  S+T+++A   G+    ++       ++D D  IL D N  T
Sbjct: 60  LELGADVNAVSHSGISFIPSNTALHAAIAGERSLEVIK---LLLAKDADTTIL-DSNGHT 115

Query: 88  AHHQAVFYDTSEEMLR 41
             H A F+D + EM+R
Sbjct: 116 CLHSAAFHDDNLEMIR 131