| BP920131 |
| Clone id |
YMU001_000133_D06 |
| Library |
YMU01 |
| Length |
495 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000133_D06. |
| Accession |
BP920131 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
TTTCCATCATGCTTTCTAAAACTATGGAAGGCAACTGTTCGAGCTGGCGCATTGACTCCC
ATCGCAAATGTTTCCGTAGAAAACAAAACCTTGATGACACCACGACAAAACAACATCTCC
ACAAGCTCCTTAACGATAGGTAAAAGACCTGCATGATGTACTCCAATCCCTCTGCGCAGT
AAGCCCTCCACACGTACAACCTGAGGCAATCGACGATCAGATCCTTTCAGCCTTGAAAAT
CCTTTGTCACAAAACACCCGAATCTCACTTATTTCTGATGTGCTAGTAAGATCTATAGCA
GTTAGACTGTCTGCTGATTTATCACAGCGGTTCTTTGAAAAACAGAAAACCACGACAGGT
AAAAGCCCTTTCTTCGACAAATTCTTAATCAAAGAGTACCATTGAGGAGCCTCTGGCTTC
CAGCCTCCACTGCTGCTCCTTTCTGCCATGCCCATGGAGCCAGAACCCCTTTGTCCTGAG
GTACCTCTACCAATG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q15477 |
| Definition |
sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens |
| Align length |
142 |
| Score (bit) |
173.0 |
| E-value |
3.0e-43 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9U0S9 |
| Definition |
tr|A9U0S9|A9U0S9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
148 |
| Score (bit) |
244.0 |
| E-value |
2.0e-63 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920131|Adiantum capillus-veneris mRNA, clone:
YMU001_000133_D06.
(495 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9U0S9|A9U0S9_PHYPA Predicted protein OS=Physcomitrella paten... 244 2e-63
tr|Q6ETH4|Q6ETH4_ORYSJ Putative Helicase SKI2W OS=Oryza sativa s... 216 5e-55
tr|A3A3D3|A3A3D3_ORYSJ Putative uncharacterized protein OS=Oryza... 216 5e-55
tr|Q9SD77|Q9SD77_ARATH Putative helicase OS=Arabidopsis thaliana... 214 2e-54
tr|A2X156|A2X156_ORYSI Putative uncharacterized protein OS=Oryza... 210 3e-53
tr|Q9STG8|Q9STG8_ARATH Putative helicase, (Fragment) OS=Arabidop... 196 4e-49
tr|Q01GD5|Q01GD5_OSTTA Putative Helicase SKI2W (ISS) OS=Ostreoco... 195 1e-48
tr|A4RR89|A4RR89_OSTLU Predicted protein (Fragment) OS=Ostreococ... 194 2e-48
tr|A7NYL9|A7NYL9_VITVI Chromosome chr6 scaffold_3, whole genome ... 183 3e-45
tr|Q8R3X0|Q8R3X0_MOUSE Skiv2l protein (Fragment) OS=Mus musculus... 175 9e-43
tr|Q8CDP6|Q8CDP6_MOUSE Putative uncharacterized protein OS=Mus m... 175 9e-43
tr|Q8C2W7|Q8C2W7_MOUSE Putative uncharacterized protein OS=Mus m... 175 9e-43
tr|Q6NZR5|Q6NZR5_MOUSE Superkiller viralicidic activity 2-like (... 175 9e-43
tr|Q3TW36|Q3TW36_MOUSE Putative uncharacterized protein OS=Mus m... 175 9e-43
tr|Q3TE28|Q3TE28_MOUSE Putative uncharacterized protein (Fragmen... 175 9e-43
tr|O70349|O70349_MOUSE Putative uncharacterized protein SKI OS=M... 175 9e-43
tr|Q6MG76|Q6MG76_RAT Superkiller viralicidic activity 2-like (S.... 174 2e-42
tr|Q4R8T6|Q4R8T6_MACFA Testis cDNA clone: QtsA-11507, similar to... 173 3e-42
tr|A5PEZ4|A5PEZ4_PIG Superkiller viralicidic activity 2-like (S.... 173 3e-42
tr|Q9NPK3|Q9NPK3_HUMAN DJ34F7.7 (Superkiller viralicidic activit... 173 3e-42
tr|Q96BC0|Q96BC0_HUMAN Superkiller viralicidic activity 2-like (... 173 3e-42
tr|Q5ST66|Q5ST66_HUMAN Superkiller viralicidic activity 2-like (... 173 3e-42
tr|Q5JP73|Q5JP73_HUMAN Superkiller viralicidic activity 2-like (... 173 3e-42
tr|Q59F56|Q59F56_HUMAN DJ34F7.7 (Superkiller viralicidic activit... 173 3e-42
tr|O76046|O76046_HUMAN Putative RNA helicase Ski2w OS=Homo sapie... 173 3e-42
tr|B4E0N1|B4E0N1_HUMAN cDNA FLJ58735, highly similar to Helicase... 173 3e-42
tr|B4DSY1|B4DSY1_HUMAN cDNA FLJ57585, highly similar to Helicase... 173 3e-42
tr|B4DM01|B4DM01_HUMAN cDNA FLJ57529, highly similar to Helicase... 173 3e-42
tr|B7ZUW9|B7ZUW9_DANRE Putative uncharacterized protein OS=Danio... 171 2e-41
tr|B6N2A1|B6N2A1_BRAFL Putative uncharacterized protein (Fragmen... 168 1e-40
>tr|A9U0S9|A9U0S9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_227295 PE=4 SV=1
Length = 1364
Score = 244 bits (623), Expect = 2e-63
Identities = 120/148 (81%), Positives = 130/148 (87%)
Frame = -2
Query: 446 AERSSSGGWKPEAPQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEIS 267
A R GW+ E QWY+LI NL+ KGLLPVVVFCFSKNRCD+SADSL++IDLT SE S
Sbjct: 629 AMRGGGTGWRSETSQWYTLINNLNSKGLLPVVVFCFSKNRCDQSADSLSSIDLTIQSEKS 688
Query: 266 EIRVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKV 87
EI +FC K FSRLKGSDRRLPQVVRV+ LL+RGIGVHHAGLLPIVKE+VEMLFCRGVIKV
Sbjct: 689 EIYMFCQKAFSRLKGSDRRLPQVVRVQELLKRGIGVHHAGLLPIVKEVVEMLFCRGVIKV 748
Query: 86 LFSTETFAMGVNAPARTVAFHSFRKHDG 3
LFSTETFAMGVNAPARTVAFHS RKHDG
Sbjct: 749 LFSTETFAMGVNAPARTVAFHSLRKHDG 776
>tr|Q6ETH4|Q6ETH4_ORYSJ Putative Helicase SKI2W OS=Oryza sativa subsp.
japonica GN=B1103G11.34 PE=4 SV=1
Length = 1281
Score = 216 bits (550), Expect = 5e-55
Identities = 110/151 (72%), Positives = 124/151 (82%), Gaps = 4/151 (2%)
Frame = -2
Query: 443 ERSSSGGWKPEAPQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISE 264
++S+SG + E+ W LI NL KK L+PVV+FCFSKNRCD+SA+S+ DLTS SE SE
Sbjct: 550 QQSTSGPRRSESSFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSE 609
Query: 263 IRVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVL 84
IR+FCDK FSRLKGSDR LPQVV ++ LLRRGIGVHHAGLLPIVKE+VEMLFCRGVIKVL
Sbjct: 610 IRLFCDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVL 669
Query: 83 FSTETFAMGVNAPART----VAFHSFRKHDG 3
FSTETFAMGVNAPART V F S RK DG
Sbjct: 670 FSTETFAMGVNAPARTLKDLVVFDSLRKFDG 700
>tr|A3A3D3|A3A3D3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_005305 PE=4 SV=1
Length = 1428
Score = 216 bits (550), Expect = 5e-55
Identities = 110/151 (72%), Positives = 124/151 (82%), Gaps = 4/151 (2%)
Frame = -2
Query: 443 ERSSSGGWKPEAPQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISE 264
++S+SG + E+ W LI NL KK L+PVV+FCFSKNRCD+SA+S+ DLTS SE SE
Sbjct: 697 QQSTSGPRRSESSFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSE 756
Query: 263 IRVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVL 84
IR+FCDK FSRLKGSDR LPQVV ++ LLRRGIGVHHAGLLPIVKE+VEMLFCRGVIKVL
Sbjct: 757 IRLFCDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVL 816
Query: 83 FSTETFAMGVNAPART----VAFHSFRKHDG 3
FSTETFAMGVNAPART V F S RK DG
Sbjct: 817 FSTETFAMGVNAPARTLKDLVVFDSLRKFDG 847
>tr|Q9SD77|Q9SD77_ARATH Putative helicase OS=Arabidopsis thaliana
GN=At3g46960 PE=4 SV=1
Length = 1347
Score = 214 bits (545), Expect = 2e-54
Identities = 107/136 (78%), Positives = 115/136 (84%)
Frame = -2
Query: 410 APQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISEIRVFCDKGFSR 231
A W LI LSK LLPVVVFCFSKN CD+ AD+LT DLTS+SE SEIRVFCDK FSR
Sbjct: 625 ASNWLLLINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSR 684
Query: 230 LKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVLFSTETFAMGVN 51
LKGSDR LPQV+R++ LL RGIGVHHAGLLPIVKE+VEMLFCRGVIKVLFSTETFAMGVN
Sbjct: 685 LKGSDRNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVN 744
Query: 50 APARTVAFHSFRKHDG 3
APARTV F + RK DG
Sbjct: 745 APARTVVFDALRKFDG 760
>tr|A2X156|A2X156_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05937 PE=4 SV=1
Length = 1290
Score = 210 bits (535), Expect = 3e-53
Identities = 104/137 (75%), Positives = 118/137 (86%)
Frame = -2
Query: 443 ERSSSGGWKPEAPQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISE 264
++S+SG + E+ W LI NL KK L+PVV+FCFSKNRCD+SA+S+ DLTS SE SE
Sbjct: 649 QQSTSGPRRSESSFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSE 708
Query: 263 IRVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVL 84
IR+FCDK FSRLKGSDR LPQVV ++ LLRRGIGVHHAGLLPIVKE+VEMLFCRGVIKVL
Sbjct: 709 IRLFCDKAFSRLKGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVL 768
Query: 83 FSTETFAMGVNAPARTV 33
FSTETFAMGVNAPARTV
Sbjct: 769 FSTETFAMGVNAPARTV 785
>tr|Q9STG8|Q9STG8_ARATH Putative helicase, (Fragment) OS=Arabidopsis
thaliana GN=T6H20.10 PE=4 SV=1
Length = 705
Score = 196 bits (499), Expect = 4e-49
Identities = 97/118 (82%), Positives = 105/118 (88%)
Frame = -2
Query: 356 VVVFCFSKNRCDKSADSLTAIDLTSTSEISEIRVFCDKGFSRLKGSDRRLPQVVRVEGLL 177
VVVFCFSKN CD+ AD+LT DLTS+SE SEIRVFCDK FSRLKGSDR LPQV+R++ LL
Sbjct: 1 VVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSLL 60
Query: 176 RRGIGVHHAGLLPIVKELVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFHSFRKHDG 3
RGIGVHHAGLLPIVKE+VEMLFCRGVIKVLFSTETFAMGVNAPARTV F + RK DG
Sbjct: 61 HRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDG 118
>tr|Q01GD5|Q01GD5_OSTTA Putative Helicase SKI2W (ISS) OS=Ostreococcus
tauri GN=Ot01g02970 PE=4 SV=1
Length = 1701
Score = 195 bits (495), Expect = 1e-48
Identities = 98/152 (64%), Positives = 117/152 (76%), Gaps = 4/152 (2%)
Frame = -2
Query: 446 AERSSSGGWKPEAPQ----WYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTST 279
A R SS G P A + W LI+NL ++ LLP+V+F FSK RCD DSLT++DLTS+
Sbjct: 951 AGRGSSSG--PNAGRDKNMWVELIRNLERRDLLPMVIFAFSKKRCDTLVDSLTSMDLTSS 1008
Query: 278 SEISEIRVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRG 99
SE EI +FC++ SRL DR+LPQV+RV LLRRG+GVHHAGLLPIVKE+VEMLFCRG
Sbjct: 1009 SEKHEIHIFCERALSRLSAPDRKLPQVLRVRELLRRGLGVHHAGLLPIVKEIVEMLFCRG 1068
Query: 98 VIKVLFSTETFAMGVNAPARTVAFHSFRKHDG 3
++KVL+ TETFAMGVNAPAR V F S RKHDG
Sbjct: 1069 LLKVLYCTETFAMGVNAPARCVCFQSLRKHDG 1100
>tr|A4RR89|A4RR89_OSTLU Predicted protein (Fragment) OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_805 PE=4 SV=1
Length = 1175
Score = 194 bits (492), Expect = 2e-48
Identities = 93/133 (69%), Positives = 110/133 (82%)
Frame = -2
Query: 401 WYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISEIRVFCDKGFSRLKG 222
W LI+NL ++ LLP+VVF FSK RCD DSLT++DLTS+SE EI VFC++ SRL
Sbjct: 495 WVELIRNLERRELLPMVVFAFSKKRCDTLVDSLTSMDLTSSSEKHEIHVFCERALSRLSV 554
Query: 221 SDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVLFSTETFAMGVNAPA 42
+DR+LPQV+RV LLRRG+GVHHAGLLPIVKE+VEMLFCRG++KVL+ TETFAMGVNAPA
Sbjct: 555 TDRKLPQVLRVRELLRRGLGVHHAGLLPIVKEIVEMLFCRGLLKVLYCTETFAMGVNAPA 614
Query: 41 RTVAFHSFRKHDG 3
R V F S RKHDG
Sbjct: 615 RCVCFQSLRKHDG 627
>tr|A7NYL9|A7NYL9_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024171001
PE=4 SV=1
Length = 1010
Score = 183 bits (465), Expect = 3e-45
Identities = 98/146 (67%), Positives = 110/146 (75%), Gaps = 4/146 (2%)
Frame = -2
Query: 428 GGWKPEAPQWYSLIKNLSKKGLLPVV--VFC--FSKNRCDKSADSLTAIDLTSTSEISEI 261
G + A W LI LSKK LLPV + C + K +D +T IDLTS+SE EI
Sbjct: 294 GNFYGTASLWLLLINKLSKKSLLPVCGNILCGIYVIAYIFKISDKMTGIDLTSSSEKHEI 353
Query: 260 RVFCDKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVLF 81
VFC++ FSRLKGSDR LPQV+RV+ LLRRGIGVHHAGLLPIVKE+VEMLFCRGV+KVLF
Sbjct: 354 HVFCERAFSRLKGSDRNLPQVIRVQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLF 413
Query: 80 STETFAMGVNAPARTVAFHSFRKHDG 3
STETFAMGVNAPARTV F S RK DG
Sbjct: 414 STETFAMGVNAPARTVVFDSLRKFDG 439
>tr|Q8R3X0|Q8R3X0_MOUSE Skiv2l protein (Fragment) OS=Mus musculus
GN=Skiv2l PE=2 SV=1
Length = 795
Score = 175 bits (444), Expect = 9e-43
Identities = 85/142 (59%), Positives = 111/142 (78%)
Frame = -2
Query: 428 GGWKPEAPQWYSLIKNLSKKGLLPVVVFCFSKNRCDKSADSLTAIDLTSTSEISEIRVFC 249
GG + + SL+ +L + LPVVVF FS+ RCD+ A LT++DLT++SE SEI +F
Sbjct: 93 GGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFL 152
Query: 248 DKGFSRLKGSDRRLPQVVRVEGLLRRGIGVHHAGLLPIVKELVEMLFCRGVIKVLFSTET 69
+ +RL+GSDR+LPQV+ + LLRRG+GVHH+G+LPI+KE+VEMLF RG++KVLF+TET
Sbjct: 153 QRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATET 212
Query: 68 FAMGVNAPARTVAFHSFRKHDG 3
FAMGVN PARTV F S RKHDG
Sbjct: 213 FAMGVNMPARTVVFDSMRKHDG 234
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