Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920067|Adiantum capillus-veneris mRNA, clone: YMU001_000132_F06. (502 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcriptio... 30 6.4 sp|Q3YVP9|VIAA_SHISS Protein viaA OS=Shigella sonnei (strain Ss0... 24 7.0 sp|Q83IY2|VIAA_SHIFL Protein viaA OS=Shigella flexneri GN=viaA P... 24 7.0 sp|Q0SYT1|VIAA_SHIF8 Protein viaA OS=Shigella flexneri serotype ... 24 7.0 sp|Q329T4|VIAA_SHIDS Protein viaA OS=Shigella dysenteriae seroty... 24 7.0 sp|Q1R4I7|VIAA_ECOUT Protein viaA OS=Escherichia coli (strain UT... 24 7.0 sp|P0ADN0|VIAA_ECOLI Protein viaA OS=Escherichia coli (strain K1... 24 7.0 sp|B1IWZ3|VIAA_ECOLC Protein viaA OS=Escherichia coli (strain AT... 24 7.0 sp|Q8FBS6|VIAA_ECOL6 Protein viaA OS=Escherichia coli O6 GN=viaA... 24 7.0 sp|Q0TAW4|VIAA_ECOL5 Protein viaA OS=Escherichia coli O6:K15:H31... 24 7.0 sp|A1AHS5|VIAA_ECOK1 Protein viaA OS=Escherichia coli O1:K1 / AP... 24 7.0 sp|A8A6K8|VIAA_ECOHS Protein viaA OS=Escherichia coli O9:H4 (str... 24 7.0 sp|P0ADN1|VIAA_ECO57 Protein viaA OS=Escherichia coli O157:H7 GN... 24 7.0 sp|A7ZTV6|VIAA_ECO24 Protein viaA OS=Escherichia coli O139:H28 (... 24 7.0 sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex... 30 8.3 sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcriptio... 30 8.3 sp|P38628|AGM1_YEAST Phosphoacetylglucosamine mutase OS=Saccharo... 30 8.3
>sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription subunit 28 OS=Drosophila melanogaster GN=MED28 PE=1 SV=1 Length = 189
Score = 30.0 bits (66), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2
Query: 453 FCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQTEKF 325 F +CL L + NS N+E+ +E ++ N + DV Q E F Sbjct: 19 FQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEAF 61
>sp|Q3YVP9|VIAA_SHISS Protein viaA OS=Shigella sonnei (strain Ss046) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q83IY2|VIAA_SHIFL Protein viaA OS=Shigella flexneri GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q0SYT1|VIAA_SHIF8 Protein viaA OS=Shigella flexneri serotype 5b (strain 8401) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q329T4|VIAA_SHIDS Protein viaA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q1R4I7|VIAA_ECOUT Protein viaA OS=Escherichia coli (strain UTI89 / UPEC) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|P0ADN0|VIAA_ECOLI Protein viaA OS=Escherichia coli (strain K12) GN=viaA PE=1 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|B1IWZ3|VIAA_ECOLC Protein viaA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q8FBS6|VIAA_ECOL6 Protein viaA OS=Escherichia coli O6 GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
>sp|Q0TAW4|VIAA_ECOL5 Protein viaA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=viaA PE=3 SV=1 Length = 483
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1
Query: 367 QQLLGGCARAD--REISSCAQSRRWFD*NSAKQADYM 263 QQ GG A R I QSR WFD ++ +D++ Sbjct: 387 QQFRGGTDLASCFRAIMERLQSREWFDADAVVISDFI 423
Score = 23.9 bits (50), Expect(2) = 7.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3
Query: 278 ASRLHGPRGKPKLIQNLWDFGQTV**RMLRSW 183 A HG G ++ ++W F + R+LR W Sbjct: 450 AMSAHGKPGIMRIFDHIWRFDTGMRSRLLRRW 481
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