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NBDC - LSDB Archive
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BP920047
Clone id YMU001_000132_D10
Library
Length 386
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000132_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATTGCTGAGGTGCATGCCGAGTACATGGGCATGTAGAATTGGGCAAAAGAGCATATGAT
TGTGCATTGCAACTACAGCCCAATGATGCTGCCGTGTATGTTAGCATGTCAAATATATAT
GCAAATGCTAGGCGTATCGCATATGTCAATGTTATGGATAAAGGTTAGCCAGAAGTGCAC
TGAAGCCTCCTTTTGGTATCCTTTGCTCCGAGGTAAGCATACATTGAAGGTTGTGGTGGT
TAGTTTGAGCAGTGTGGGTGGCTTTGATAGTCACAACTTATCCTTGGTTTGAATATGCTA
GCTTGAAACTTGAATATCCTCTCTTGTGCAAGACTAGCCTTGGTGGAAGTCACGTTCTAT
CTTTGATACGATTTATGGGATCTCGA
■■Homology search results ■■ -
sp_hit_id Q5G1T1
Definition sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana
Align length 40
Score (bit) 49.7
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920047|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D10.
         (386 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei...    50   5e-06
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei...    49   6e-06
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei...    47   2e-05
sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protei...    47   4e-05
sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protei...    45   9e-05
sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protei...    45   1e-04
sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protei...    44   2e-04
sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containi...    44   2e-04
sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containi...    44   2e-04
sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protei...    44   3e-04
sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei...    44   3e-04
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    43   4e-04
sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protei...    43   4e-04
sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protei...    43   4e-04
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    43   6e-04
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei...    43   6e-04
sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protei...    42   7e-04
sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protei...    42   7e-04
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei...    42   7e-04
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi...    42   7e-04
sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protei...    42   7e-04
sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei...    42   0.001
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei...    42   0.001
sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protei...    42   0.001
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei...    42   0.001
sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protei...    42   0.001
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi...    41   0.002
sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protei...    41   0.002
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei...    41   0.002
sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protei...    40   0.003

>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic OS=Arabidopsis thaliana
           GN=EMB2261 PE=2 SV=1
          Length = 850

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 23/40 (57%), Positives = 28/40 (70%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANA 129
           GACRVH + ELGK A    L+L PN+ A Y+ +SNIYA A
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACA 690


>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-E69 PE=2 SV=1
          Length = 895

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +1

Query: 13  ACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYA 123
           AC++HG VELGK A   A++L+P+DA  Y+S+SNI A
Sbjct: 830 ACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILA 866


>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein
           At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
          Length = 646

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 34/49 (69%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARRIAYVNVM 156
           GACR+ G+VE+GKR  +  + + P+D+  YV++SN+YA+    + V+ M
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEM 499


>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein
           At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
          Length = 597

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYAN 126
           G CR+HG+ ELGK+A D  ++L P  +A Y+ +S+IYA+
Sbjct: 489 GVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYAD 527


>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein
           At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
          Length = 650

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 17/41 (41%), Positives = 30/41 (73%)
 Frame = +1

Query: 13  ACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           AC +H + E+ +R +   LQ+ PND+A YV ++N++A+A+R
Sbjct: 456 ACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKR 496


>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial OS=Arabidopsis thaliana
           GN=DYW10 PE=2 SV=2
          Length = 661

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACRVH +VEL + A +  LQL   +AA YV ++NIYA+  R
Sbjct: 461 GACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNR 502


>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein
           At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
          Length = 722

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = +1

Query: 13  ACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           ACR+HG +ELGK A    L+L+P+     V MSNIYA  +R
Sbjct: 522 ACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQR 562


>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing
           protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77
           PE=3 SV=1
          Length = 686

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/42 (50%), Positives = 25/42 (59%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACRVH   ++G  A D   QL P  +  YV +SNIYA A R
Sbjct: 486 GACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGR 527


>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing
           protein At3g13770, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H85 PE=3 SV=1
          Length = 628

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARRIAYVN 150
           GACRVH  V++G+      ++++P +A  YV +SN+YA+A R A VN
Sbjct: 433 GACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVN 479


>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein
           At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
          Length = 499

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           G CR+HG++E+ ++A +    L P D  VY  M  +YANA R
Sbjct: 430 GGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAER 471
tr_hit_id A7QW05
Definition tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 52.0
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920047|Adiantum capillus-veneris mRNA, clone:
YMU001_000132_D10.
         (386 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genom...    52   1e-05
tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, wh...    52   2e-05
tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|Q60EM0|Q60EM0_ORYSJ Os05g0455900 protein OS=Oryza sativa subs...    51   3e-05
tr|A2Y5C6|A2Y5C6_ORYSI Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|A7R627|A7R627_VITVI Chromosome undetermined scaffold_1140, wh...    50   6e-05
tr|A7R5A5|A7R5A5_VITVI Chromosome undetermined scaffold_923, who...    50   6e-05
tr|A7R3F3|A7R3F3_VITVI Chromosome undetermined scaffold_518, who...    50   6e-05
tr|A7QWP3|A7QWP3_VITVI Chromosome chr4 scaffold_205, whole genom...    50   6e-05
tr|A7PAH3|A7PAH3_VITVI Chromosome chr14 scaffold_9, whole genome...    50   6e-05
tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea...    50   7e-05
tr|A7R4G1|A7R4G1_VITVI Chromosome undetermined scaffold_682, who...    50   7e-05
tr|A7R352|A7R352_VITVI Chromosome undetermined scaffold_484, who...    50   7e-05
tr|A5BVF2|A5BVF2_VITVI Putative uncharacterized protein OS=Vitis...    50   7e-05
tr|A7P886|A7P886_VITVI Chromosome chr3 scaffold_8, whole genome ...    49   1e-04
tr|A7P2H4|A7P2H4_VITVI Chromosome chr1 scaffold_5, whole genome ...    49   1e-04
tr|A5BGC7|A5BGC7_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A7P4V7|A7P4V7_VITVI Chromosome chr4 scaffold_6, whole genome ...    49   2e-04
tr|A7QTX0|A7QTX0_VITVI Chromosome undetermined scaffold_171, who...    48   2e-04
tr|A7PRQ2|A7PRQ2_VITVI Chromosome chr14 scaffold_27, whole genom...    48   2e-04
tr|A5BN40|A5BN40_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|Q6DT52|Q6DT52_ARALP AT1G74600 (Fragment) OS=Arabidopsis lyrat...    48   3e-04
tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1    48   3e-04
tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom...    48   3e-04
tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q10PA0|Q10PA0_ORYSJ Pentatricopeptide, putative, expressed OS...    47   4e-04

>tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007631001
           PE=4 SV=1
          Length = 586

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYA---NARRIAYVNVMDK 162
           GAC++HG+VE+GKR  +  ++L P+D+  YV++SNIYA   N   +A V +M K
Sbjct: 391 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMK 444


>tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029899 PE=4 SV=1
          Length = 613

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYA---NARRIAYVNVMDK 162
           GAC++HG+VE+GKR  +  ++L P+D+  YV++SNIYA   N   +A V +M K
Sbjct: 413 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMK 466


>tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008013001 PE=4 SV=1
          Length = 704

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACR HG++EL  +A +  LQL+P++AA YV +SN+YA+A R
Sbjct: 521 GACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGR 562


>tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037837 PE=4 SV=1
          Length = 719

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACR HG++EL  +A +  LQL+P++AA YV +SN+YA+A R
Sbjct: 521 GACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGR 562


>tr|Q60EM0|Q60EM0_ORYSJ Os05g0455900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1651_D06.13 PE=4 SV=1
          Length = 874

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANA 129
           GACRVH +VELGK + D  L L+P+D++ YV +SNIYA A
Sbjct: 679 GACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAA 718


>tr|A2Y5C6|A2Y5C6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20194 PE=4 SV=1
          Length = 874

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANA 129
           GACRVH +VELGK + D  L L+P+D++ YV +SNIYA A
Sbjct: 679 GACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAA 718


>tr|A7R627|A7R627_VITVI Chromosome undetermined scaffold_1140, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00007922001 PE=4 SV=1
          Length = 803

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 20/40 (50%), Positives = 31/40 (77%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANA 129
           GACRVHG+ ELG+ A +  L+ +P+D A Y+ +SN++A+A
Sbjct: 619 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 658


>tr|A7R5A5|A7R5A5_VITVI Chromosome undetermined scaffold_923, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005103001 PE=4 SV=1
          Length = 596

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACR+HG+++L +RA +   QL+P +AA YV + NIYA A R
Sbjct: 477 GACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASR 518


>tr|A7R3F3|A7R3F3_VITVI Chromosome undetermined scaffold_518, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00013634001 PE=4 SV=1
          Length = 1029

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 20/40 (50%), Positives = 31/40 (77%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANA 129
           GACRVHG+ ELG+ A +  L+ +P+D A Y+ +SN++A+A
Sbjct: 834 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 873


>tr|A7QWP3|A7QWP3_VITVI Chromosome chr4 scaffold_205, whole genome
           shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00008739001 PE=4 SV=1
          Length = 576

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +1

Query: 10  GACRVHGHVELGKRAYDCALQLQPNDAAVYVSMSNIYANARR 135
           GACR+HG+++L +RA +   QL+P +AA YV + NIYA A R
Sbjct: 459 GACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASR 500