NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919861
Clone id YMU001_000130_A07
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCCACCGAATTAGCTGTCTGCCAAAGCAGCTTTTTATAATCAATTGCTACTCCAGGCAT
GCCTTTGCGTAATCCCCCGTTTTCTTCTACAAGTTTATCTAGTTTTGCCTCCACTCCTTC
AGAGTAGCCCCCAGCTATATCAACTGTCAACCTCTTCAAATTAGCAGAAGGTGAAGTTTT
GATGCTTGGTTTGGTCTTGACTTGCTTGAGAGCAGCAACTTGCCTCTCACTGACCTCATT
CCCCATCAAATTCCTTTGCTTGCTCTGAAGATCTAGTGACCGTAAAGCCTCTATTTTCTC
ATCCCGTTTCCTGTGTGTGACTATTGTACTGTCCTCAATACGTGACTCTTCCTCCGAGCT
TTCTTCAATCATAACAGGTTCTGGGTCATCTTCATCAGAGTCACTGTGAACTACAGACTG
TGGAGTTGTTGGAT
■■Homology search results ■■ -
sp_hit_id Q9Y496
Definition sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens
Align length 121
Score (bit) 31.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919861|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_A07.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens...    32   1.5  
sp|Q6KHK5|SYA_MYCMO Alanyl-tRNA synthetase OS=Mycoplasma mobile ...    31   2.5  
sp|Q8TEV9|SMCR8_HUMAN Smith-Magenis syndrome chromosomal region ...    31   2.5  
sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=A...    31   2.5  
sp|O30188|Y048_ARCFU Uncharacterized protein AF_0048 OS=Archaeog...    30   3.3  
sp|Q8R7X9|RS13_THETN 30S ribosomal protein S13 OS=Thermoanaeroba...    30   3.3  
sp|Q874I4|PYRD_CANAL Dihydroorotate dehydrogenase, mitochondrial...    30   3.3  
sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxo...    30   3.3  
sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii...    30   3.3  
sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fasci...    30   3.3  
sp|Q54Y85|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyo...    30   4.3  
sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus...    30   5.6  
sp|Q1AXX5|GRPE_RUBXD Protein grpE OS=Rubrobacter xylanophilus (s...    30   5.6  
sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococ...    29   7.3  
sp|Q8CSN9|PARE_STAES DNA topoisomerase 4 subunit B OS=Staphyloco...    29   7.3  
sp|Q5HPI6|PARE_STAEQ DNA topoisomerase 4 subunit B OS=Staphyloco...    29   7.3  
sp|Q6VVA6|HAK1_ORYSJ Potassium transporter 1 OS=Oryza sativa sub...    29   7.3  
sp|Q26486|FKBP4_SPOFR 46 kDa FK506-binding nuclear protein OS=Sp...    29   7.3  
sp|Q2U5K2|DRE2_ASPOR Protein dre2 OS=Aspergillus oryzae GN=dre2 ...    29   7.3  
sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel ...    29   9.6  
sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, ...    29   9.6  
sp|Q8CH77|NAV1_MOUSE Neuron navigator 1 OS=Mus musculus GN=Nav1 ...    29   9.6  
sp|Q8NEY1|NAV1_HUMAN Neuron navigator 1 OS=Homo sapiens GN=NAV1 ...    29   9.6  
sp|Q95JT3|LRC43_MACFA Leucine-rich repeat-containing protein 43 ...    29   9.6  
sp|B4HR78|KTU_DROSE Protein kintoun OS=Drosophila sechellia GN=P...    29   9.6  
sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis (s...    29   9.6  
sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Ara...    29   9.6  

>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens
           GN=KIF3A PE=1 SV=2
          Length = 702

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
 Frame = -3

Query: 405 SDSDEDDPEPVMIXXXXXXXSRIEDST----------IVTHRKRDEKIEALRS-LDLQSK 259
           S S+EDD E   +        +  D T          I    K DE+ +AL + LD++ +
Sbjct: 386 SGSEEDDDEEGEVGEDGEKRKKRRDQTGKKKVSPDKMIEMQAKIDEERKALETKLDMEEE 445

Query: 258 QRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVDIAGGYSEGVEA-KLDKLVEE 82
           +RN    E+ +R+   LK  +   S+    SA  K++   I GG     +A + +KL+EE
Sbjct: 446 ERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKV---IVGGVDLLAKAEEQEKLLEE 502

Query: 81  N 79
           +
Sbjct: 503 S 503


>sp|Q6KHK5|SYA_MYCMO Alanyl-tRNA synthetase OS=Mycoplasma mobile
            GN=alaS PE=3 SV=1
          Length = 905

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 26/106 (24%), Positives = 44/106 (41%)
 Frame = -3

Query: 318  THRKRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVD 139
            TH +  +KIE  + + L SK +N    +    +    + +K + S       NL      
Sbjct: 690  THIENTKKIETFKIISLDSKGKNKFRIKAITSKKIVEEYLKDEISKNKLVLENLIEKNKS 749

Query: 138  IAGGYSEGVEAKLDKLVEENGGLRKGMPGVAIDYKKLLWQTANSVD 1
            +  GY        + L E+N  + K +     DYKKLL  + N ++
Sbjct: 750  LFQGYKMNFSWSKN-LDEQNEQITKHIDQARSDYKKLLKNSENKLE 794


>sp|Q8TEV9|SMCR8_HUMAN Smith-Magenis syndrome chromosomal region
           candidate gene 8 protein OS=Homo sapiens GN=SMCR8 PE=1
           SV=2
          Length = 937

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 237 EVSERQVAALKQVKTKPSIKTSPSANLKRLTVD----IAGGYSEGVEAKLDKLVEENG 76
           EV +R V   + + +KPS    PS++L+   +       G Y   VE+ L K+ +E G
Sbjct: 377 EVDDRMVEKQESIPSKPSQDRPPSSSLEECPIPKVLISVGSYKSSVESVLIKMEQELG 434


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49
           OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2
          Length = 558

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -3

Query: 282 RSLDLQSKQRNLMGNEVSE-RQVAALKQVKTKPSIKTSPSANLKRLTVDIAGGYSEGVEA 106
           RS     K   +MG  +S  R+++A      +P + T P+ N    +V + GG    VEA
Sbjct: 80  RSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVN----SVLLVGGRE--VEA 133

Query: 105 KLDKLVEENGGLRKGMPGVAIDYKK 31
            ++ L EE   L  G PG   D  K
Sbjct: 134 DMNTLEEEGANLLIGTPGRLSDMMK 158


>sp|O30188|Y048_ARCFU Uncharacterized protein AF_0048
           OS=Archaeoglobus fulgidus GN=AF_0048 PE=4 SV=1
          Length = 413

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -3

Query: 255 RNLMGNEVSERQVAALKQVKTKPSIKTSPSANLK 154
           +NL GN + +   AAL++VK++ +IK +PS  ++
Sbjct: 363 KNLPGNRLGDAFKAALEEVKSEENIKLNPSTEVE 396


>sp|Q8R7X9|RS13_THETN 30S ribosomal protein S13
           OS=Thermoanaerobacter tengcongensis GN=rpsM PE=3 SV=1
          Length = 122

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/71 (29%), Positives = 39/71 (54%)
 Frame = -3

Query: 312 RKRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVDIA 133
           R R ++I A   ++  ++ R+L  +EVS+ +    K+ K +  ++   + N+KRL +DI 
Sbjct: 27  RSRSKEILAKAGVNPDTRVRDLTEDEVSKLREIIEKEYKVEGDLRKEVAMNIKRL-IDI- 84

Query: 132 GGYSEGVEAKL 100
            G   G+  KL
Sbjct: 85  -GCYRGIRHKL 94


>sp|Q874I4|PYRD_CANAL Dihydroorotate dehydrogenase, mitochondrial
           OS=Candida albicans GN=URA9 PE=3 SV=1
          Length = 444

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/89 (23%), Positives = 42/89 (47%)
 Frame = -3

Query: 285 LRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVDIAGGYSEGVEA 106
           LR L  ++K  NL+   V ER V     +  KP +    + +L    ++     ++  EA
Sbjct: 263 LRDLQSEAKLTNLLTTVVKERNVLGKNLLGNKPPVLVKVAPDLTEPEIESIANSAK--EA 320

Query: 105 KLDKLVEENGGLRKGMPGVAIDYKKLLWQ 19
           K+D ++  N  +++ +  +    K+L+ Q
Sbjct: 321 KVDGIIISNTTIQRPVDRLLTTDKQLINQ 349


>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor
           OS=Myxococcus xanthus GN=mfd PE=3 SV=1
          Length = 1201

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = -3

Query: 300 EKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVDIAGGYS 121
           + IE++R+ D QS           +R V ALK+V   P+ +   +   +      A   +
Sbjct: 222 DTIESIRAFDPQS-----------QRTVDALKEVDLVPAREVLLTDETRPRAESAARAVA 270

Query: 120 EGVEAKLDKLVEENGGLRKGMPGVAID 40
           + +     KL E+   LR+G+PG  ++
Sbjct: 271 DRINLPTIKLREQLDALREGLPGFGME 297


>sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii
           GN=KIF3A PE=2 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = -3

Query: 333 DSTIVTHRKRDEKIEALRS-LDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANL 157
           D  I    K DE+ +AL + LD++ ++RN    E+ +R+   LK  +   S+    SA  
Sbjct: 420 DKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALE 479

Query: 156 KRLTVDIAGGYSEGVEA-KLDKLVEEN 79
           K++   I GG     +A + +KL+EE+
Sbjct: 480 KKV---IVGGVDLLAKAEEQEKLLEES 503


>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca
           fascicularis GN=KIF3A PE=2 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = -3

Query: 333 DSTIVTHRKRDEKIEALRS-LDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANL 157
           D  I    K DE+ +AL + LD++ ++RN    E+ +R+   LK  +   S+    SA  
Sbjct: 420 DKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALE 479

Query: 156 KRLTVDIAGGYSEGVEA-KLDKLVEEN 79
           K++   I GG     +A + +KL+EE+
Sbjct: 480 KKV---IVGGVDLLAKAEEQEKLLEES 503
tr_hit_id Q7RSK7
Definition tr|Q7RSK7|Q7RSK7_PLAYO CCAAT-box DNA binding protein subunit B, putative OS=Plasmodium yoelii yoelii
Align length 113
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919861|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_A07.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7RSK7|Q7RSK7_PLAYO CCAAT-box DNA binding protein subunit B, ...    35   1.9  
tr|A0E1T0|A0E1T0_PARTE Chromosome undetermined scaffold_73, whol...    35   1.9  
tr|Q7Y1C9|Q7Y1C9_ORYSJ Putative uncharacterized protein OSJNBa00...    33   5.4  
tr|Q10A91|Q10A91_ORYSJ Os03g0861100 protein OS=Oryza sativa subs...    33   5.4  
tr|B8AP66|B8AP66_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q7ZV21|Q7ZV21_DANRE Leucine zipper transcription factor-like ...    33   9.3  
tr|Q0V7H0|Q0V7H0_PHANO Putative uncharacterized protein OS=Phaeo...    33   9.3  

>tr|Q7RSK7|Q7RSK7_PLAYO CCAAT-box DNA binding protein subunit B,
            putative OS=Plasmodium yoelii yoelii GN=PY00348 PE=4 SV=1
          Length = 1194

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
 Frame = -3

Query: 315  HRKRDEKIEALRSLDLQSKQRNLMGNEV---SERQVAALKQV-----KTKPSIKTSPSAN 160
            H+ R +K    + +D+ S  +N   +E    SE++ A  KQ      KT+ SI       
Sbjct: 733  HKDRSQKYSNWKDIDINSGMKNEKNSEKTNESEKEKAINKQDHIYKRKTENSINVDICEK 792

Query: 159  LKRLTV--DIAGGYSEGVEAKLDKLVEENGGLRKGMPGVAIDYKKLLWQTANS 7
             K++    ++     +GVE  ++K VE+NG       G     KK ++Q  N+
Sbjct: 793  KKQINSGKNVEKSVEKGVEKSVEKSVEKNGEKNGEKNGEKNGEKKDIYQNINN 845


>tr|A0E1T0|A0E1T0_PARTE Chromosome undetermined scaffold_73, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00022418001 PE=4 SV=1
          Length = 531

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
 Frame = -3

Query: 402 DSDEDDPEPVMIXXXXXXXSRIEDSTIVTHRKRDEKIEALRSLDLQSKQ-----RNLMGN 238
           D+DE+ P P+ I        +++D  +V  +  + K + +++ D    Q     RNLMGN
Sbjct: 322 DADENQP-PITIQINE----KVQDKQVVESKIMENKFQRVQNPDNDIDQTEQIARNLMGN 376

Query: 237 EVSERQVAALKQ------VKTKPSIKT--SPSANLKRLTVDIAGGYSEGVEAKLDKLVEE 82
           E   +Q   +K+       K +  I+T  +P   +++ T+    G S  ++  +DKL+++
Sbjct: 377 EQFNKQQEQIKKNLLGGYQKNQAPIETVFNPRVVIQKKTIYERLGQSMAIDFTVDKLLQK 436


>tr|Q7Y1C9|Q7Y1C9_ORYSJ Putative uncharacterized protein
           OSJNBa0033P04.24 (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=OSJNBa0033P04.24 PE=4
           SV=1
          Length = 1269

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 309 KRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPS 166
           + +E+I+ L  L  Q +Q+ +     +   ++  +QVK KPS KTSPS
Sbjct: 802 QEEEQIKRLERLK-QERQKRIAARSSTSNSISTPQQVKVKPSPKTSPS 848


>tr|Q10A91|Q10A91_ORYSJ Os03g0861100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0861100 PE=2 SV=1
          Length = 1256

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 309 KRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPS 166
           + +E+I+ L  L  Q +Q+ +     +   ++  +QVK KPS KTSPS
Sbjct: 791 QEEEQIKRLERLK-QERQKRIAARSSTSNSISTPQQVKVKPSPKTSPS 837


>tr|B8AP66|B8AP66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14439 PE=4 SV=1
          Length = 1275

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 309 KRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPS 166
           + +E+I+ L  L  Q +Q+ +     +   ++  +QVK KPS KTSPS
Sbjct: 791 QEEEQIKRLERLK-QERQKRIAARSSTSNSISTPQQVKVKPSPKTSPS 837


>tr|Q7ZV21|Q7ZV21_DANRE Leucine zipper transcription factor-like 1
           OS=Danio rerio GN=lztfl1 PE=2 SV=1
          Length = 298

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = -3

Query: 276 LDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANLKRLTVDIAGGYSEGVEAKLD 97
           L LQ+    L   E+ E QVA  ++   KP+IK +      +L     GG SE ++ ++ 
Sbjct: 96  LRLQTDISELENRELLE-QVAEFEKTDFKPNIKANQETTKPKLAPLNEGGVSELLQREIS 154

Query: 96  KLVEENGGLR 67
           +L E+N  L+
Sbjct: 155 RLQEDNDKLK 164


>tr|Q0V7H0|Q0V7H0_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_00044 PE=4 SV=1
          Length = 315

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = -3

Query: 336 EDSTIVTHRKRDEKIEALRSLDLQSKQRNLMGNEVSERQVAALKQVKTKPSIKTSPSANL 157
           +D+ +    K  ++ E   +  +QS +  L  NE +E+++    QVK++  + T  SA  
Sbjct: 205 DDNGLAGRHKDRDRFEITLTRRIQSAEEQLKQNEAAEKKM----QVKSRGGLSTQFSAPT 260

Query: 156 KRLTVDIAGGYSEGVEAKLDKLVEE 82
           K    +    Y E  + KL+K  +E
Sbjct: 261 KERDKEWEKKYGEEAKKKLEKERQE 285