BP919859 |
Clone id |
YMU001_000130_A05 |
Library |
YMU01 |
Length |
397 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000130_A05. |
Accession |
BP919859 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1946Contig1 |
Sequence |
CTCCAAGGGAGTGCAAAACTATTCTGGGGTTTAACCAGATTTTCTATTTCATGTCATCTT GTGATATAGTACAAATACCTACTAAACAACCTCCTTAAGTGGTTGTTACCTACCAAAAAC ACACTCTAGCTTGAGAGCTGTCCCATTGAATTTCAGCTATGCTCAAAACCTCTATGAGCA ACCATCGGCCAATAGCAATGCCCTTGTAATCCGAGCTGTGTTATGCCCAAACCATCCTCC CTCATGTTAAGATCTTTGTTATAGGATTTGATTGCATTGCCCTTCTTCTACCATATTTCT CAACCACAAACTAGTCAAACTCCTTGCAGCAACAATCGCCATCCTTGAAATGATGAAGGC AATGAGAATCTTTTATAATAATGTCACGTCTCTCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FXH1 |
Definition |
sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana |
Align length |
23 |
Score (bit) |
43.9 |
E-value |
0.0002 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2QWV0 |
Definition |
tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subsp. japonica |
Align length |
26 |
Score (bit) |
41.6 |
E-value |
0.02 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919859|Adiantum capillus-veneris mRNA, clone: YMU001_000130_A05. (397 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subs... 42 0.020 tr|A7PWF7|A7PWF7_VITVI Chromosome chr8 scaffold_34, whole genome... 42 0.020 tr|A5AJ01|A5AJ01_VITVI Putative uncharacterized protein OS=Vitis... 42 0.020 tr|A2ZIP8|A2ZIP8_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.020 tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subs... 40 0.044 tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.044 tr|Q8S0S0|Q8S0S0_ORYSJ Selenium-binding protein-like OS=Oryza sa... 40 0.058 tr|A3A0A5|A3A0A5_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.058 tr|A2WXP3|A2WXP3_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.058 tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis... 40 0.075 tr|A7QDH6|A7QDH6_VITVI Chromosome chr10 scaffold_81, whole genom... 40 0.075 tr|Q6DXS0|Q6DXS0_GOSHI Putative pentatricopeptide repeat protein... 39 0.098 tr|B2ZAU5|B2ZAU5_GOSAR Putative pentatricopeptide OS=Gossypium a... 39 0.098 tr|B2ZAR9|B2ZAR9_GOSRA Putative pentatricopeptide repeat protein... 39 0.098 tr|Q60EX3|Q60EX3_ORYSJ Os05g0370000 protein OS=Oryza sativa subs... 39 0.13 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 39 0.13 tr|A2YZT8|A2YZT8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13 tr|Q7F2F8|Q7F2F8_ORYSJ P0402A09.8 protein (P0455C04.2 protein) O... 38 0.22 tr|Q655L5|Q655L5_ORYSJ Putative uncharacterized protein P0672D08... 38 0.22 tr|Q10K51|Q10K51_ORYSJ Pentatricopeptide, putative (Putative unc... 38 0.22 tr|B8ACR8|B8ACR8_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.22 tr|B4FXU5|B4FXU5_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.22 tr|B4FKV9|B4FKV9_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.22 tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom... 38 0.22 tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis... 38 0.22 tr|A2ZN87|A2ZN87_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.22 tr|Q84TA9|Q84TA9_ORYSJ Os03g0821700 protein OS=Oryza sativa subs... 38 0.29 tr|Q2R497|Q2R497_ORYSJ Os11g0482400 protein OS=Oryza sativa subs... 38 0.29 tr|Q10MA5|Q10MA5_ORYSJ Pentatricopeptide, putative (Putative unc... 38 0.29 tr|B6SPJ2|B6SPJ2_MAIZE Selenium-binding protein-like OS=Zea mays... 38 0.29
>tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subsp. japonica GN=Os12g0181900 PE=4 SV=1 Length = 584
Score = 41.6 bits (96), Expect = 0.020 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -1
Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317 E R+II++D H HHFKDG C C E+ Sbjct: 558 ESREIIVRDKHRFHHFKDGKCSCLEY 583
>tr|A7PWF7|A7PWF7_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025594001 PE=4 SV=1 Length = 644
Score = 41.6 bits (96), Expect = 0.020 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R+IIIKD C HHFKDG C C +F Sbjct: 620 REIIIKDPSCFHHFKDGFCSCGDF 643
>tr|A5AJ01|A5AJ01_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011875 PE=4 SV=1 Length = 734
Score = 41.6 bits (96), Expect = 0.020 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R+IIIKD C HHFKDG C C +F Sbjct: 710 REIIIKDPSCFHHFKDGFCSCGDF 733
>tr|A2ZIP8|A2ZIP8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37700 PE=4 SV=1 Length = 584
Score = 41.6 bits (96), Expect = 0.020 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -1
Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317 E R+II++D H HHFKDG C C E+ Sbjct: 558 ESREIIVRDKHRFHHFKDGKCSCLEY 583
>tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subsp. japonica GN=Os03g0235200 PE=2 SV=1 Length = 641
Score = 40.4 bits (93), Expect = 0.044 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -1
Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317 +RDII++DS+ HHFKDG C C+++ Sbjct: 616 QRDIIVRDSNRFHHFKDGICSCRDY 640
>tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10663 PE=4 SV=1 Length = 703
Score = 40.4 bits (93), Expect = 0.044 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -1
Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317 +RDII++DS+ HHFKDG C C+++ Sbjct: 678 QRDIIVRDSNRFHHFKDGICSCRDY 702
>tr|Q8S0S0|Q8S0S0_ORYSJ Selenium-binding protein-like OS=Oryza sativa subsp. japonica GN=P0408G07.2 PE=4 SV=1 Length = 517
Score = 40.0 bits (92), Expect = 0.058 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R+II++DS+C HH KDG C C ++ Sbjct: 493 REIILRDSNCFHHMKDGSCSCGDY 516
>tr|A3A0A5|A3A0A5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_004227 PE=4 SV=1 Length = 490
Score = 40.0 bits (92), Expect = 0.058 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R+II++DS+C HH KDG C C ++ Sbjct: 466 REIILRDSNCFHHMKDGSCSCGDY 489
>tr|A2WXP3|A2WXP3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04695 PE=4 SV=1 Length = 494
Score = 40.0 bits (92), Expect = 0.058 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R+II++DS+C HH KDG C C ++ Sbjct: 470 REIILRDSNCFHHMKDGSCSCGDY 493
>tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis thaliana GN=PCMP-H2 PE=4 SV=1 Length = 287
Score = 39.7 bits (91), Expect = 0.075 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -1
Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317 R II++DS+C HHF+DG C C ++ Sbjct: 263 RHIILRDSNCFHHFRDGKCSCGDY 286
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