BP919859
Clone id YMU001_000130_A05
Library
Length 397
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000130_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCCAAGGGAGTGCAAAACTATTCTGGGGTTTAACCAGATTTTCTATTTCATGTCATCTT
GTGATATAGTACAAATACCTACTAAACAACCTCCTTAAGTGGTTGTTACCTACCAAAAAC
ACACTCTAGCTTGAGAGCTGTCCCATTGAATTTCAGCTATGCTCAAAACCTCTATGAGCA
ACCATCGGCCAATAGCAATGCCCTTGTAATCCGAGCTGTGTTATGCCCAAACCATCCTCC
CTCATGTTAAGATCTTTGTTATAGGATTTGATTGCATTGCCCTTCTTCTACCATATTTCT
CAACCACAAACTAGTCAAACTCCTTGCAGCAACAATCGCCATCCTTGAAATGATGAAGGC
AATGAGAATCTTTTATAATAATGTCACGTCTCTCTTT
■■Homology search results ■■ -
sp_hit_id Q9FXH1
Definition sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana
Align length 23
Score (bit) 43.9
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919859|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_A05.
(397 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protei... 44 2e-04
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 40 0.004
sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protei... 39 0.010
sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containi... 38 0.018
sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protei... 37 0.023
sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protei... 37 0.023
sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protei... 37 0.031
sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protei... 37 0.031
sp|P0C7R1|PPR74_ARATH Pentatricopeptide repeat-containing protei... 37 0.040
sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protei... 37 0.040
sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containi... 36 0.052
sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protei... 36 0.052
sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protei... 36 0.052
sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protei... 36 0.068
sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protei... 36 0.068
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi... 36 0.068
sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protei... 35 0.089
sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei... 35 0.089
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei... 35 0.089
sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protei... 35 0.089
sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protei... 35 0.12
sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protei... 35 0.12
sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protei... 35 0.12
sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protei... 35 0.12
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei... 35 0.12
sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protei... 35 0.15
sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protei... 35 0.15
sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protei... 35 0.15
sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protei... 35 0.15
sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei... 34 0.20

>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein
At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894

Score = 43.9 bits (102), Expect = 2e-04
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = -1

Query: 385 DIIIKDSHCLHHFKDGDCCCKEF 317
DI+++D+ CLHHFK+GDC CK++
Sbjct: 871 DILLEDTRCLHHFKNGDCSCKDY 893


>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H87 PE=2 SV=1
Length = 633

Score = 40.0 bits (92), Expect = 0.004
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+II++D++ HHFKDG+C CK++
Sbjct: 609 REIIVRDTNRFHHFKDGNCSCKDY 632


>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial OS=Arabidopsis thaliana
GN=DYW10 PE=2 SV=2
Length = 661

Score = 38.5 bits (88), Expect = 0.010
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E+R+II++D+ HHFKDG C C ++
Sbjct: 635 EKREIIVRDTTRFHHFKDGSCSCGDY 660


>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing
protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35
PE=3 SV=1
Length = 995

Score = 37.7 bits (86), Expect = 0.018
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E R II++DS+ HHF+DG C C +F
Sbjct: 969 EGRQIILRDSNRFHHFQDGACSCSDF 994


>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein
At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705

Score = 37.4 bits (85), Expect = 0.023
Identities = 11/26 (42%), Positives = 22/26 (84%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
+ R+II++D++ HHF++G+C CK++
Sbjct: 679 KEREIILRDANRFHHFRNGECSCKDY 704


>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein
At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573

Score = 37.4 bits (85), Expect = 0.023
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+I+++D + HHF+DG C C++F
Sbjct: 549 REIVVRDCNRFHHFRDGSCSCRDF 572


>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein
At5g40410, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H15 PE=2 SV=1
Length = 608

Score = 37.0 bits (84), Expect = 0.031
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E+R III+DS HHF DG C C ++
Sbjct: 582 EKRRIIIRDSKRFHHFLDGSCSCSDY 607


>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-H45 PE=2 SV=1
Length = 871

Score = 37.0 bits (84), Expect = 0.031
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1

Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317
RR+I+++DS+ H FKDG C C+ F
Sbjct: 846 RREIVLRDSNRFHQFKDGHCSCRGF 870


>sp|P0C7R1|PPR74_ARATH Pentatricopeptide repeat-containing protein
At1g47580, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-H50 PE=2 SV=1
Length = 239

Score = 36.6 bits (83), Expect = 0.040
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E R+II++D+ HHF+DG+C C ++
Sbjct: 213 EDREIIVRDNKRFHHFRDGNCSCGDY 238


>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein
At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665

Score = 36.6 bits (83), Expect = 0.040
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1

Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317
+RDI+++D+ HHFKDG C C ++
Sbjct: 640 QRDILLRDARQFHHFKDGRCSCGDY 664


tr_hit_id Q2QWV0
Definition tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 41.6
E-value 0.02
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919859|Adiantum capillus-veneris mRNA, clone:
YMU001_000130_A05.
(397 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subs... 42 0.020
tr|A7PWF7|A7PWF7_VITVI Chromosome chr8 scaffold_34, whole genome... 42 0.020
tr|A5AJ01|A5AJ01_VITVI Putative uncharacterized protein OS=Vitis... 42 0.020
tr|A2ZIP8|A2ZIP8_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.020
tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subs... 40 0.044
tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.044
tr|Q8S0S0|Q8S0S0_ORYSJ Selenium-binding protein-like OS=Oryza sa... 40 0.058
tr|A3A0A5|A3A0A5_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.058
tr|A2WXP3|A2WXP3_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.058
tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis... 40 0.075
tr|A7QDH6|A7QDH6_VITVI Chromosome chr10 scaffold_81, whole genom... 40 0.075
tr|Q6DXS0|Q6DXS0_GOSHI Putative pentatricopeptide repeat protein... 39 0.098
tr|B2ZAU5|B2ZAU5_GOSAR Putative pentatricopeptide OS=Gossypium a... 39 0.098
tr|B2ZAR9|B2ZAR9_GOSRA Putative pentatricopeptide repeat protein... 39 0.098
tr|Q60EX3|Q60EX3_ORYSJ Os05g0370000 protein OS=Oryza sativa subs... 39 0.13
tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 39 0.13
tr|A2YZT8|A2YZT8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.13
tr|Q7F2F8|Q7F2F8_ORYSJ P0402A09.8 protein (P0455C04.2 protein) O... 38 0.22
tr|Q655L5|Q655L5_ORYSJ Putative uncharacterized protein P0672D08... 38 0.22
tr|Q10K51|Q10K51_ORYSJ Pentatricopeptide, putative (Putative unc... 38 0.22
tr|B8ACR8|B8ACR8_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.22
tr|B4FXU5|B4FXU5_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.22
tr|B4FKV9|B4FKV9_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.22
tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom... 38 0.22
tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis... 38 0.22
tr|A2ZN87|A2ZN87_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.22
tr|Q84TA9|Q84TA9_ORYSJ Os03g0821700 protein OS=Oryza sativa subs... 38 0.29
tr|Q2R497|Q2R497_ORYSJ Os11g0482400 protein OS=Oryza sativa subs... 38 0.29
tr|Q10MA5|Q10MA5_ORYSJ Pentatricopeptide, putative (Putative unc... 38 0.29
tr|B6SPJ2|B6SPJ2_MAIZE Selenium-binding protein-like OS=Zea mays... 38 0.29

>tr|Q2QWV0|Q2QWV0_ORYSJ Os12g0181900 protein OS=Oryza sativa subsp.
japonica GN=Os12g0181900 PE=4 SV=1
Length = 584

Score = 41.6 bits (96), Expect = 0.020
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E R+II++D H HHFKDG C C E+
Sbjct: 558 ESREIIVRDKHRFHHFKDGKCSCLEY 583


>tr|A7PWF7|A7PWF7_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025594001
PE=4 SV=1
Length = 644

Score = 41.6 bits (96), Expect = 0.020
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+IIIKD C HHFKDG C C +F
Sbjct: 620 REIIIKDPSCFHHFKDGFCSCGDF 643


>tr|A5AJ01|A5AJ01_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011875 PE=4 SV=1
Length = 734

Score = 41.6 bits (96), Expect = 0.020
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+IIIKD C HHFKDG C C +F
Sbjct: 710 REIIIKDPSCFHHFKDGFCSCGDF 733


>tr|A2ZIP8|A2ZIP8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37700 PE=4 SV=1
Length = 584

Score = 41.6 bits (96), Expect = 0.020
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1

Query: 394 ERRDIIIKDSHCLHHFKDGDCCCKEF 317
E R+II++D H HHFKDG C C E+
Sbjct: 558 ESREIIVRDKHRFHHFKDGKCSCLEY 583


>tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subsp.
japonica GN=Os03g0235200 PE=2 SV=1
Length = 641

Score = 40.4 bits (93), Expect = 0.044
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -1

Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317
+RDII++DS+ HHFKDG C C+++
Sbjct: 616 QRDIIVRDSNRFHHFKDGICSCRDY 640


>tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_10663 PE=4 SV=1
Length = 703

Score = 40.4 bits (93), Expect = 0.044
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -1

Query: 391 RRDIIIKDSHCLHHFKDGDCCCKEF 317
+RDII++DS+ HHFKDG C C+++
Sbjct: 678 QRDIIVRDSNRFHHFKDGICSCRDY 702


>tr|Q8S0S0|Q8S0S0_ORYSJ Selenium-binding protein-like OS=Oryza
sativa subsp. japonica GN=P0408G07.2 PE=4 SV=1
Length = 517

Score = 40.0 bits (92), Expect = 0.058
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+II++DS+C HH KDG C C ++
Sbjct: 493 REIILRDSNCFHHMKDGSCSCGDY 516


>tr|A3A0A5|A3A0A5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_004227 PE=4 SV=1
Length = 490

Score = 40.0 bits (92), Expect = 0.058
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+II++DS+C HH KDG C C ++
Sbjct: 466 REIILRDSNCFHHMKDGSCSCGDY 489


>tr|A2WXP3|A2WXP3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04695 PE=4 SV=1
Length = 494

Score = 40.0 bits (92), Expect = 0.058
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R+II++DS+C HH KDG C C ++
Sbjct: 470 REIILRDSNCFHHMKDGSCSCGDY 493


>tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis
thaliana GN=PCMP-H2 PE=4 SV=1
Length = 287

Score = 39.7 bits (91), Expect = 0.075
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1

Query: 388 RDIIIKDSHCLHHFKDGDCCCKEF 317
R II++DS+C HHF+DG C C ++
Sbjct: 263 RHIILRDSNCFHHFRDGKCSCGDY 286