BP919807
Clone id YMU001_000129_D05
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTACCTGCAGGTACTCCACTAAGGTATTTCCAGTTAAGCTCCTAGTCTCTTTTGTAATAT
TTTCTTAAGTTTACACGCTTCTCTCTGCAGAATAAAGTTGTCTGTCTCTATGGTAAACCC
TTACCATCTCTACTTTCTAAAGCTAATCAGGTGCCTTGGCATTGGTGATTTCCAAGCATA
TCCTCGGCTGTCTTTGAGACAAACTTAACCTCTACTTACTCCAAGGAGCTATGGTTGCAG
TCTCATCCCAACCGACTACCGCCTGCAAGTGCATCACCCATTCGACCTCTACTCTCGTAT
ACGCATAACCAAGGGATCTCTTTGTTAACACGGCCAACCCTAGTAGACAGCATTTGCCCG
ACACTGGTAATCAAGTCATACAGAGTTGTGCTTCATTGGGATTGGGATCAAGGTCTCCCA
CATATAAGGAGTTTGTCCTGTAACAGTTGGTAAATTAATTCTTAGCTTTGCTTGGCCTTC
ATCAA
■■Homology search results ■■ -
sp_hit_id Q05196
Definition sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana
Align length 45
Score (bit) 37.4
E-value 0.036
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919807|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D05.
(485 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido... 37 0.036
sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic ... 36 0.080
sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic ... 35 0.18
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo a... 35 0.18
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic ... 35 0.23
sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic ... 35 0.23
sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic ... 35 0.23
sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenop... 35 0.23
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus no... 35 0.23
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus mus... 35 0.23
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sa... 35 0.23
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos tau... 35 0.23
sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho... 34 0.40
sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic ... 34 0.40
sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic ... 33 0.52
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 33 0.52
sp|Q5JQF8|PAP1M_HUMAN Polyadenylate-binding protein 1-like 2 OS=... 33 0.68
sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic ... 33 0.68
sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic ... 33 0.68
sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic ... 33 0.68
sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ... 33 0.68
sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic ... 33 0.88
sp|A4QUF0|PABP_MAGGR Polyadenylate-binding protein, cytoplasmic ... 33 0.88
sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic ... 32 1.2
sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic ... 32 1.2

>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5
OS=Arabidopsis thaliana GN=PAB5 PE=2 SV=2
Length = 668

Score = 37.4 bits (85), Expect = 0.036
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = -2

Query: 433 NSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAVLTKRSLGYAY 299
+SLYVGDLDP+ NE+ L V+ L LT RSLGYAY
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAY 89


>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1
Length = 579

Score = 36.2 bits (82), Expect = 0.080
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2

Query: 430 SLYVGDLDPNPNEAQLCMT*LPVSGKCCL-LGLAVLTKRSLGYAY 299
SLYVGDLDP+ +EA L P+ + + +TK SLGYAY
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAY 80


>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2
Length = 627

Score = 35.0 bits (79), Expect = 0.18
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -2

Query: 430 SLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLA--VLTKRSLGYAY 299
SLYVG+L+P+ NEA L P+ G+ + + +TK+SLGYAY
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPI-GQVASIRVCRDAVTKKSLGYAY 96


>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo
abelii GN=PABPC1 PE=2 SV=1
Length = 636

Score = 35.0 bits (79), Expect = 0.18
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAV----LTKRSLGYAYTRVE 287
Y SLYVGDL P+ EA L P +L + V +T+RSLGYAY +
Sbjct: 8 YPMASLYVGDLHPDATEAMLYEKFSPAGP---ILSIRVCRDMITRRSLGYAYVNFQ 60


>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4
Length = 577

Score = 34.7 bits (78), Expect = 0.23
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2

Query: 430 SLYVGDLDPNPNEAQLCMT*LPVSGKCCL-LGLAVLTKRSLGYAY 299
SLYVGDL+P+ +EA L P+ + + +TK SLGYAY
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAY 83


>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1
Length = 629

Score = 34.7 bits (78), Expect = 0.23
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -2

Query: 430 SLYVGDLDPNPNEAQLCMT*LPV----SGKCCLLGLAVLTKRSLGYAY 299
SLYVG+LDP+ EA L P+ S + C +T+RSLGYAY
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVC---RDAITRRSLGYAY 91


>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and
nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2
Length = 631

Score = 34.7 bits (78), Expect = 0.23
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -2

Query: 430 SLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLA--VLTKRSLGYAY 299
SLYVG+L+P+ NEA L P+ G+ + + +TK+SLGYAY
Sbjct: 59 SLYVGELNPSVNEALLFEIFSPI-GQVSSIRVCRDAVTKKSLGYAY 103


>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus
laevis GN=pabpc1-B PE=2 SV=1
Length = 633

Score = 34.7 bits (78), Expect = 0.23
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAV----LTKRSLGYAYTRVE 287
Y SLYVGDL P+ EA L P +L + V +T+RSLGYAY +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGP---ILSIRVCRDMITRRSLGYAYVNFQ 60


>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus
norvegicus GN=Pabpc1 PE=2 SV=1
Length = 636

Score = 34.7 bits (78), Expect = 0.23
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAV----LTKRSLGYAYTRVE 287
Y SLYVGDL P+ EA L P +L + V +T+RSLGYAY +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGP---ILSIRVCRDMITRRSLGYAYVNFQ 60


>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus
musculus GN=Pabpc1 PE=1 SV=1
Length = 636

Score = 34.7 bits (78), Expect = 0.23
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAV----LTKRSLGYAYTRVE 287
Y SLYVGDL P+ EA L P +L + V +T+RSLGYAY +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGP---ILSIRVCRDMITRRSLGYAYVNFQ 60


tr_hit_id A9TLC5
Definition tr|A9TLC5|A9TLC5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 38.1
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919807|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D05.
(485 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TLC5|A9TLC5_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.22
tr|A9S663|A9S663_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.48
tr|Q6GNR8|Q6GNR8_XENLA MGC80927 protein OS=Xenopus laevis GN=pab... 36 0.82
tr|A9TPK9|A9TPK9_PHYPA Predicted protein OS=Physcomitrella paten... 36 0.82
tr|B6NQU3|B6NQU3_BRAFL Putative uncharacterized protein OS=Branc... 36 0.82
tr|B6KWG7|B6KWG7_BRAFL Putative uncharacterized protein (Fragmen... 36 0.82
tr|B3S125|B3S125_TRIAD Putative uncharacterized protein OS=Trich... 36 0.82
tr|Q4SJ34|Q4SJ34_TETNG Chromosome 21 SCAF14577, whole genome sho... 35 1.4
tr|Q4RJX8|Q4RJX8_TETNG Chromosome 9 SCAF15033, whole genome shot... 35 1.4
tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia ph... 35 1.8
tr|Q38E63|Q38E63_9TRYP Polyadenylate-binding protein 1, putative... 35 1.8
tr|Q2U143|Q2U143_ASPOR Predicted protein OS=Aspergillus oryzae G... 35 1.8
tr|Q6P5M4|Q6P5M4_DANRE Pabpc1a protein (Fragment) OS=Danio rerio... 35 2.4
tr|Q6DF12|Q6DF12_XENTR Polyadenylate-binding protein 1 OS=Xenopu... 35 2.4
tr|Q5ZL53|Q5ZL53_CHICK Putative uncharacterized protein OS=Gallu... 35 2.4
tr|Q499B6|Q499B6_DANRE Poly A binding protein, cytoplasmic 1 a O... 35 2.4
tr|Q9DBE3|Q9DBE3_MOUSE Putative uncharacterized protein OS=Mus m... 35 2.4
tr|Q99L36|Q99L36_MOUSE Poly A binding protein, cytoplasmic 1 OS=... 35 2.4
tr|Q8BN32|Q8BN32_MOUSE Putative uncharacterized protein OS=Mus m... 35 2.4
tr|Q3U8U8|Q3U8U8_MOUSE Putative uncharacterized protein OS=Mus m... 35 2.4
tr|Q05DT1|Q05DT1_MOUSE Pabpc1 protein (Fragment) OS=Mus musculus... 35 2.4
tr|Q5R8L7|Q5R8L7_PONAB Putative uncharacterized protein DKFZp468... 35 2.4
tr|B4DQX0|B4DQX0_HUMAN cDNA FLJ59219, highly similar to Poly(A)-... 35 2.4
tr|B3KT93|B3KT93_HUMAN cDNA FLJ37875 fis, clone BRSSN2018771, hi... 35 2.4
tr|B5VHU1|B5VHU1_YEAS6 YER165Wp-like protein OS=Saccharomyces ce... 35 2.4
tr|B3LRS6|B3LRS6_YEAS1 Poly(A) binding protein OS=Saccharomyces ... 35 2.4
tr|A6ZRC1|A6ZRC1_YEAS7 Poly(A) binding protein OS=Saccharomyces ... 35 2.4
tr|Q5FVZ8|Q5FVZ8_XENTR Poly(A) binding protein, cytoplasmic 4 (I... 34 3.1
tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyz... 34 3.1
tr|B7N5U4|B7N5U4_ECOLX Putative uncharacterized protein OS=Esche... 34 3.1

>tr|A9TLC5|A9TLC5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170712 PE=4 SV=1
Length = 650

Score = 38.1 bits (87), Expect = 0.22
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = -2

Query: 436 TNSLYVGDLDPNPNEAQL----CMT*LPVSGKCCLLGLAVLTKRSLGYAY 299
+ SLYVGDL+PN +EAQL VS + C ++T+RSLGYAY
Sbjct: 27 STSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVC---RDLITRRSLGYAY 73


>tr|A9S663|A9S663_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_124737 PE=4 SV=1
Length = 439

Score = 37.0 bits (84), Expect = 0.48
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = -2

Query: 436 TNSLYVGDLDPNPNEAQL----CMT*LPVSGKCCLLGLAVLTKRSLGYAY 299
+ SLYVGDL+PN +EAQL VS + C ++T+RSLGY+Y
Sbjct: 23 STSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVC---RDLITRRSLGYSY 69


>tr|Q6GNR8|Q6GNR8_XENLA MGC80927 protein OS=Xenopus laevis GN=pabpc4
PE=2 SV=1
Length = 626

Score = 36.2 bits (82), Expect = 0.82
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2

Query: 451 TNCYRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCL-LGLAVLTKRSLGYAYTRVE 287
T+ Y SLYVGDL P+ EA L P + + ++T+RSLGYAY +
Sbjct: 5 TSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60


>tr|A9TPK9|A9TPK9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_108547 PE=4 SV=1
Length = 647

Score = 36.2 bits (82), Expect = 0.82
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = -2

Query: 448 NCYRTNSLYVGDLDPNPNEAQL----CMT*LPVSGKCCLLGLAVLTKRSLGYAY 299
N + + S+YVGDL+ N +EAQL T VS + C ++T+RSLGYAY
Sbjct: 19 NQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVC---RDLITRRSLGYAY 69


>tr|B6NQU3|B6NQU3_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_234358 PE=4 SV=1
Length = 620

Score = 36.2 bits (82), Expect = 0.82
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCL-LGLAVLTKRSLGYAYTRVE 287
Y SLYVGDLDP+ EA L P + + ++T+RSLGYAY +
Sbjct: 9 YPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQ 61


>tr|B6KWG7|B6KWG7_BRAFL Putative uncharacterized protein (Fragment)
OS=Branchiostoma floridae GN=BRAFLDRAFT_144547 PE=4 SV=1
Length = 586

Score = 36.2 bits (82), Expect = 0.82
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCL-LGLAVLTKRSLGYAYTRVE 287
Y SLYVGDLDP+ EA L P + + ++T+RSLGYAY +
Sbjct: 9 YPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQ 61


>tr|B3S125|B3S125_TRIAD Putative uncharacterized protein
OS=Trichoplax adhaerens GN=TRIADDRAFT_27786 PE=4 SV=1
Length = 622

Score = 36.2 bits (82), Expect = 0.82
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = -2

Query: 451 TNCYRTNSLYVGDLDPNPNEAQL---CMT*LPVSG-KCCLLGLAVLTKRSLGYAYTRVE 287
++ Y SLYVGDL P+ NEAQL + P+S + C +T+RSLGYAY +
Sbjct: 13 SSSYPMASLYVGDLAPDVNEAQLYEKFNSTGPISSIRVC---RDAITRRSLGYAYVNFQ 68


>tr|Q4SJ34|Q4SJ34_TETNG Chromosome 21 SCAF14577, whole genome
shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00017377001 PE=4 SV=1
Length = 128

Score = 35.4 bits (80), Expect = 1.4
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LPVSGKCCLLGLAV----LTKRSLGYAYTRVE 287
Y SLYVGDL P+ EA L P +L + V +T+RSLGYAY +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAG---AILSIRVCRDMITRRSLGYAYVNFQ 60


>tr|Q4RJX8|Q4RJX8_TETNG Chromosome 9 SCAF15033, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00033231001 PE=4 SV=1
Length = 642

Score = 35.4 bits (80), Expect = 1.4
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLCMT*LP----VSGKCCLLGLAVLTKRSLGYAY 299
Y SLYVGDL P+ EA L P +S + C ++T+RSLGYAY
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVC---RDIITRRSLGYAY 56


>tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia
phyllitidis PE=2 SV=1
Length = 638

Score = 35.0 bits (79), Expect = 1.8
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = -2

Query: 442 YRTNSLYVGDLDPNPNEAQLC----MT*LPVSGKCCLLGLAVLTKRSLGYAY 299
Y SLYVGDLDP+ +E++L VS + C ++TK+SLGYAY
Sbjct: 23 YVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVC---RDLMTKKSLGYAY 71