BP919803
Clone id YMU001_000129_D01
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CACCAAAGACATTGTTTTCCCTCTACAAGGAAAACTTTGAGAATGGTGTGTGTCAATATG
TGCATGGAAACACACGTACATTCAAAAGAGGACTTCGACATACTAGCTTAGCAAGAGCAT
TGCTCAATGAATTTGTGGATAACAACTCTGAGAAGATGCTACATAGAAGTAGAACAATGT
TGGTGGGCTCAAGGGAGACTCAAGTGATAATTTCATCAACATACAAACAAGTGGATATTT
TAAGTGAGATCAACATGACACTTGAACAAATGGGGTATGAGAAGAAGCTTTCCGAGTCTT
CTTTCGGTAGAATTTGGAACAAAGAGTAGCTACATGTCACCTTAACAAAGACAAGTGAGT
TCTCTAAGTGTAATAGTTGTAGTTCAATCGAAGCAAGATCGGAAGCCAAACCTATCCTTG
AAGAAAGAGCTCTCCTCTTGAGGGAGAGAGAAGTTCACATGGCATAACAAAAGAGTT
■■Homology search results ■■ -
sp_hit_id Q86K94
Definition sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum
Align length 70
Score (bit) 31.2
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919803|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D01.
(477 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subun... 31 2.5
sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens... 30 7.2
sp|P24790|VIM4_XENLA Vimentin-4 OS=Xenopus laevis GN=vim4 PE=2 SV=1 29 9.4
sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A... 29 9.4

>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit
3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=1
Length = 186

Score = 31.2 bits (69), Expect = 2.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +3

Query: 123 LNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDILSEINMTLEQMGY-------E 281
L V N EK+ T+ G+ TQ+I K + + ++N+ LEQMGY E
Sbjct: 8 LGNDVFNKVEKINSELFTLTYGALVTQLI-----KDYEDIEQVNIKLEQMGYNIGIRLIE 62

Query: 282 KKLSESSFGR 311
+ L++S GR
Sbjct: 63 EFLAKSGIGR 72


>sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens
GN=KIF23 PE=1 SV=3
Length = 960

Score = 29.6 bits (65), Expect = 7.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2

Query: 281 EEAFRVFFR*NLEQRVATCHLNKD 352
EEAF VF+R ++R+A HLN++
Sbjct: 274 EEAFEVFWRGQKKRRIANTHLNRE 297


>sp|P24790|VIM4_XENLA Vimentin-4 OS=Xenopus laevis GN=vim4 PE=2 SV=1
Length = 463

Score = 29.3 bits (64), Expect = 9.4
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3

Query: 66 GNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDI 239
GN ++F++ + + SLAR L V++ E+++ + RE Q+ I ++ QVD+
Sbjct: 195 GNLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDM 252


>sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A
OS=Dictyostelium discoideum GN=dimA PE=2 SV=2
Length = 1230

Score = 29.3 bits (64), Expect = 9.4
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3

Query: 129 EFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQ--VDILSEINMTLEQMGYEKK 287
EF+D N +K ++SR+ +Q I S Y+Q D +SE+ ++Q+ E +
Sbjct: 548 EFIDENEDKSKNKSRS-------SQNIASRNYRQRKKDHISEVEFKVQQLSLENE 595


tr_hit_id A8W2X4
Definition tr|A8W2X4|A8W2X4_9BACI Putative uncharacterized protein OS=Bacillus selenitireducens MLS10
Align length 132
Score (bit) 89.4
E-value 8.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919803|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D01.
(477 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8W2X4|A8W2X4_9BACI Putative uncharacterized protein OS=Bacil... 89 8e-17
tr|A9RIR0|A9RIR0_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.026
tr|A9RN78|A9RN78_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.034
tr|A9U3F1|A9U3F1_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044
tr|A9RGS3|A9RGS3_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044
tr|A9RKK0|A9RKK0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.058
tr|A9RTJ3|A9RTJ3_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.076
tr|A7RT39|A7RT39_NEMVE Predicted protein OS=Nematostella vectens... 40 0.076
tr|A7S989|A7S989_NEMVE Predicted protein OS=Nematostella vectens... 39 0.099
tr|A9SIJ7|A9SIJ7_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.13
tr|A9TH22|A9TH22_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.17
tr|A9U3J0|A9U3J0_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.29
tr|B6MC92|B6MC92_BRAFL Putative uncharacterized protein OS=Branc... 37 0.38
tr|B6KWU5|B6KWU5_BRAFL Putative uncharacterized protein OS=Branc... 37 0.38
tr|A9T9K1|A9T9K1_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.64
tr|A7R618|A7R618_VITVI Chromosome undetermined scaffold_1129, wh... 36 0.84
tr|A5BUC9|A5BUC9_VITVI Putative uncharacterized protein OS=Vitis... 36 0.84
tr|A9SFT3|A9SFT3_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.9
tr|B6M2G1|B6M2G1_BRAFL Putative uncharacterized protein OS=Branc... 35 2.4
tr|B6LW19|B6LW19_BRAFL Putative uncharacterized protein OS=Branc... 35 2.4
tr|B6KRZ5|B6KRZ5_TOXGO Zinc finger (CCCH type) protein, putative... 33 9.2

>tr|A8W2X4|A8W2X4_9BACI Putative uncharacterized protein OS=Bacillus
selenitireducens MLS10 GN=BselDRAFT_2604 PE=4 SV=1
Length = 739

Score = 89.4 bits (220), Expect = 8e-17
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Frame = +3

Query: 3 PKTLFSLYKENF-ENGVCQYVHGNTRTFK-RGLRHTSLARALLNEFVDNNSEKMLHRSRT 176
P+T F K F E V Q VHGN T K RG H A+ FV+ SE+ H++R
Sbjct: 271 PRTTFYRIKTEFKEQRVQQAVHGNDGTHKTRG--HVVYGEAIFKRFVETCSEQQPHKTRL 328

Query: 177 MLVGSRETQVIISSTYKQVDILSEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTS 356
+ G+R+TQ ++ S Y + IL ++N L+ GY KKLS+S F R+W+ + V++ K S
Sbjct: 329 LEDGTRDTQRVLPSMYTKGAILEDVNWELQSNGY-KKLSQSRFSRLWSNKFRDVSIGKYS 387

Query: 357 EFSKCNSCSSIE 392
FSKC+ C++I+
Sbjct: 388 SFSKCDECTAIK 399


>tr|A9RIR0|A9RIR0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66669 PE=4 SV=1
Length = 939

Score = 41.2 bits (95), Expect = 0.026
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGNTR + +HT A A L ++ ++ M HR+R+ G + +I+ +T++ D +
Sbjct: 256 HGNTR-LPKPRKHTEQATATLKCILEKEADHMPHRTRSTKSGEKMVSMILPATFQWKDQI 314

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G +++S S+ +I + + + F +C +C
Sbjct: 315 PKINEVNTAFGL-REVSSSNLSKIRASRFPEFDVKRPGDNFVQCGTC 360


>tr|A9RN78|A9RN78_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_68365 PE=4 SV=1
Length = 868

Score = 40.8 bits (94), Expect = 0.034
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGN + +HT A A L ++ ++ M HR+R+ G + +I+ +T++ D +
Sbjct: 231 HGNAG-LPKPRKHTEQATATLKCILEKEADHMPHRTRSTKSGEKMVSMILPATFQWKDQI 289

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G +++S S+ +I L + + + F++C +C
Sbjct: 290 PKINEVNTAFGL-REVSSSNLSKIRASRFLEFDVKRPGDNFARCGTC 335


>tr|A9U3F1|A9U3F1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_101278 PE=4 SV=1
Length = 825

Score = 40.4 bits (93), Expect = 0.044
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = +3

Query: 45 GVCQYVHGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTY 224
G+ HGNT + +HT A A L ++ ++ M HR+R+ G + +I+ +T+
Sbjct: 221 GITARDHGNTG-LPKPRKHTEQATATLKCILEKEADHMPHRTRSTKSGKKMVSMILPATF 279

Query: 225 KQVDILSEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+ D + +IN G +++S S+ +I + + + F++C +C
Sbjct: 280 QWKDQIPKINEVNTAFGL-REVSSSNLSKIRASRFPEFDVKRPGDNFAQCGTC 331


>tr|A9RGS3|A9RGS3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_65910 PE=4 SV=1
Length = 911

Score = 40.4 bits (93), Expect = 0.044
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGNT + +HT A A+L ++ ++ M HR+R+ G + +I+ +T++ D +
Sbjct: 256 HGNTG-LPKPRKHTEQATAMLKCILEKEADHMPHRTRSTKSGEKMVLMILPATFQWKDQI 314

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G +++S S+ +I + + + + F++C +C
Sbjct: 315 PKINEVNTAFGL-REVSSSNLSKIRASKFPEFDVKRPRDNFARCGTC 360


>tr|A9RKK0|A9RKK0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_67391 PE=4 SV=1
Length = 904

Score = 40.0 bits (92), Expect = 0.058
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGNT + +HT A A L ++ ++ M HR+R+ G + +I+ +T++ D +
Sbjct: 256 HGNTG-LPKPRKHTEQATATLKCILEKEADHMPHRTRSTKSGEKMVSMILPATFQWKDQI 314

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G +++S S+ +I + + + F++C +C
Sbjct: 315 PKINEVNTAFGL-REVSSSNLSKIRASRFPEFDVKRPGDNFARCGTC 360


>tr|A9RTJ3|A9RTJ3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_70363 PE=4 SV=1
Length = 924

Score = 39.7 bits (91), Expect = 0.076
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGNT + +HT A A L ++ ++ M HR+R++ G + +I+ +T++ D
Sbjct: 256 HGNTG-LPKPRKHTEQATATLKCILEKEADHMPHRTRSIKSGEKMVSMILPATFQWKDQY 314

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G +++S S+ +I + + + F++C +C
Sbjct: 315 PKINEVNTAFGL-REVSSSNLSKIRASRFPEFDVKRPGDNFARCGTC 360


>tr|A7RT39|A7RT39_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g240479 PE=4 SV=1
Length = 1119

Score = 39.7 bits (91), Expect = 0.076
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +3

Query: 6 KTLFSLYKENFENGVCQYVHGNTRTFKRGLR-HTSLARALLNEFVDNNSEKMLHRSRTML 182
++ FS + +++GV HGN K+G+ T+ A L F+ + + S+T
Sbjct: 506 RSSFSRVAKQYKDGVVVVQHGNKG--KKGIMAKTADCIAWLQFFIGSIGDNQPD-SKT-- 560

Query: 183 VGSRETQVIISSTYKQVDILSEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSEF 362
+ + S + VDI ++ + G +S S F R+W + HV + K + F
Sbjct: 561 -------IHLPSCFSGVDIYKKMKDENTRFGLPT-ISLSHFYRLWEQHFSHVLIPKENRF 612

Query: 363 SKCNSCSSIEARSE 404
+KCN C+ + E
Sbjct: 613 TKCNDCTQYKREKE 626


>tr|A7S989|A7S989_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g208742 PE=4 SV=1
Length = 1100

Score = 39.3 bits (90), Expect = 0.099
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = +3

Query: 6 KTLFSLYKENFENGVCQYVHGNTRTFKRGLR-HTSLARALLNEFVDNNSEKMLHRSRTML 182
++ FS + +++GV HGN K+G+ T+ A L F+ + + S+T
Sbjct: 487 RSSFSRVAKQYKDGVVVVQHGNKG--KKGIMAKTADCIAWLQFFIGSIGDNQPD-SKT-- 541

Query: 183 VGSRETQVIISSTYKQVDILSEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSEF 362
+ + S + VDI ++ + G +S S F R+W + HV + K + F
Sbjct: 542 -------IHLPSCFSGVDIYKKMKDENTRFGLPL-ISLSHFYRLWEQHFSHVLIPKENRF 593

Query: 363 SKCNSCSSIEARSE 404
+KCN C+ + E
Sbjct: 594 TKCNDCTQYKREKE 607


>tr|A9SIJ7|A9SIJ7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_229795 PE=4 SV=1
Length = 852

Score = 38.9 bits (89), Expect = 0.13
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = +3

Query: 63 HGNTRTFKRGLRHTSLARALLNEFVDNNSEKMLHRSRTMLVGSRETQVIISSTYKQVDIL 242
HGNT + +HT A A L ++ ++ M HR+R+ G + +I+ +T++ D +
Sbjct: 243 HGNTG-LPKPRKHTKQATATLKCILEKEADHMPHRTRSTKSGEKMVSMILPATFQWKDQI 301

Query: 243 SEINMTLEQMGYEKKLSESSFGRIWNKE*LHVTLTKTSE-FSKCNSC 380
+IN G ++S S+ +I + + + F++C +C
Sbjct: 302 PKINKVNTAFGL-TEVSSSNLSKIRASRFPKFDVKRPGDNFARCGTC 347