BP919782
Clone id YMU001_000129_B04
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTAAACCCATGCCCAGGCCCAACAGGAATCCAATCTAGTATAGTGATGAGGATTTTTTTG
AAAGGCGAAGCCCCAGCAGCATAGATGCAAGAGCAGGTGAGGTATCTAATGAAAATTTAC
CAATGGAGAAGTGATGTTCCATGCTTCTCCCTTATCAACAAAAAATCTCAGTACTCATGA
AACACCAAAAACTTGTTCTCTGATAAAGCAGCTCTTTGTCCAGCCTTCATTATTTACATG
GAACGGAAACAGGAATGAGACTGGCAAGACCATCAAAGACGGAAACGGCTTGCTCTTTGC
CGTGGAATGGATTAGAAACAGCTTCTTATAGCTATGTTTTGGATGTAACCTTGTTGTTCA
TTAAGAAATGGCTGAAAGGGAGAAATCGGTGATTTTGGAAACAGAGTTTCCGATCCGATA
GGCCCCGGAAGCTGTGTTACCTTGGTATCATGTATTTGGTGTATAACAGACGTACGAATG
ATCCCAATGTAACATAAATGGAAAGCCAGCTGGTGAAATAATTTGCTGCTCGAAATGTGA
ATAATTGATGTAAAATCGTGAATACTCCTGA
■■Homology search results ■■ -
sp_hit_id P08096
Definition sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe
Align length 38
Score (bit) 31.6
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919782|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B04.
(571 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces ... 32 2.9
sp|Q0WPR4|SCP34_ARATH Serine carboxypeptidase-like 34 OS=Arabido... 32 2.9

>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces
pombe GN=top2 PE=1 SV=2
Length = 1485

Score = 31.6 bits (70), Expect = 2.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3

Query: 455 IHDTKVTQLPGPIGSETLFPKSPISPFQPFLNEQQGYI 342
+H+TKV++L G + SET + +S Q +N Q ++
Sbjct: 769 VHETKVSRLAGYVASETAYHHGEVSMEQTIVNLAQNFV 806


>sp|Q0WPR4|SCP34_ARATH Serine carboxypeptidase-like 34
OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2
Length = 499

Score = 31.6 bits (70), Expect = 2.9
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -3

Query: 257 HSCFRSM*IMKAGQRA----ALSENKFLVFHEY*DFLLIREKHGTSLLHW*IFIRYLTCS 90
+ CFRS + A QRA L + F +Y ++ + E HG +L +W
Sbjct: 36 NGCFRSR--VLAAQRADRVKELPGQPPVKFRQYAGYVTVNETHGRALFYW---------- 83

Query: 89 CIYAAGASPFKKILITILDWIPVGPG 12
+ A +P KK +L W+ GPG
Sbjct: 84 -FFEATQNPSKK---PVLLWLNGGPG 105


tr_hit_id A3U3S0
Definition tr|A3U3S0|A3U3S0_9RHOB Peptidoglycan binding protein, putative OS=Oceanicola batsensis HTCC2597
Align length 45
Score (bit) 36.2
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919782|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B04.
(571 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3U3S0|A3U3S0_9RHOB Peptidoglycan binding protein, putative O... 36 1.3
tr|Q6BY08|Q6BY08_DEBHA DEHA2A13376p OS=Debaryomyces hansenii GN=... 35 2.2
tr|A7VUR6|A7VUR6_9CLOT Putative uncharacterized protein OS=Clost... 33 8.5

>tr|A3U3S0|A3U3S0_9RHOB Peptidoglycan binding protein, putative
OS=Oceanicola batsensis HTCC2597 GN=OB2597_03684 PE=4
SV=1
Length = 539

Score = 36.2 bits (82), Expect = 1.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2

Query: 122 NGEVMFHASPLSTKNLSTHETPKTCSLIKQLFVQPSLFTWNGNRN 256
NG++ F + KNLSTH TP+ +++ + V P TWN R+
Sbjct: 315 NGKIYFKTRSVIGKNLSTHRTPEFSDVMEHMIVNP---TWNVPRS 356


>tr|Q6BY08|Q6BY08_DEBHA DEHA2A13376p OS=Debaryomyces hansenii
GN=DEHA2A13376g PE=3 SV=1
Length = 292

Score = 35.4 bits (80), Expect = 2.2
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -3

Query: 539 HISSSKLFHQLAFHLCYIGIIRTSVIHQIHDTKVTQL---PGPIGSETLFPKSPISPFQP 369
HI++S ++L FH + ++H+ TK++ L P P S+ L P PISP QP
Sbjct: 34 HIANSFNSNKLQFHTF------SRILHETKKTKLSDLEKSPKP-SSKPLPPLEPISPLQP 86

Query: 368 FLNEQQGYIQNI 333
L E I NI
Sbjct: 87 LLRENIYTIPNI 98


>tr|A7VUR6|A7VUR6_9CLOT Putative uncharacterized protein
OS=Clostridium leptum DSM 753 GN=CLOLEP_02313 PE=4 SV=1
Length = 381

Score = 33.5 bits (75), Expect = 8.5
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3

Query: 363 KKWLKGRNR*FWKQSFRSDRPRKL 434
KKW KG+NR F +Q FR++RP ++
Sbjct: 194 KKWEKGQNRNFLQQQFRTERPNQV 217