BP919748
Clone id YMU001_000128_F10
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCATGTCGCAGTTCCTGATGAATTCATTCTTCCTTATCTTGGATGGTCGTATCTTGTCA
AGCCTGCACTTTTGTTTTGCAAGGGGACATGTAGTCGATCTTGCTTGTGGATCCAGGATT
TTCTTGTGGTGCCTAGTGATTTGAGTCATTTTCTGGGAAGAAGATTTTCGGTGTGTCTAT
TGTGTCGTCCCCATAGCAAGGCTTCATGGAAGTGTGTTCTCAATTGGGCAGAGACATGAA
GTTTGTTTACCTAGGATTTATACTGTCACATGAAGTTACCTTGCGCGCCTTGTGTCAACG
ATGGTCCCTGTTTGCCTTCCACCCTGCAAGTCCTGTTGTGTACTAGACAGAGGCAAACAT
GCTAATATAAGAGTAGTTCATTAGCGGAAGTTAGAGTGGATAAAGTTTGATGGCATGGGC
GGACGCAGACTCAATTGGGTTCTCCTGTTGGTTGCTTCAATGGAGCGATGGGCATTATCT
GTA
■■Homology search results ■■ -
sp_hit_id A8K0R7
Definition sp|A8K0R7|ZN839_HUMAN Zinc finger protein 839 OS=Homo sapiens
Align length 125
Score (bit) 30.4
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919748|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_F10.
(483 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A8K0R7|ZN839_HUMAN Zinc finger protein 839 OS=Homo sapiens GN... 30 4.4
sp|Q9EQT5|TINAL_RAT Tubulointerstitial nephritis antigen-like OS... 30 7.5
sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1 29 9.8

>sp|A8K0R7|ZN839_HUMAN Zinc finger protein 839 OS=Homo sapiens
GN=ZNF839 PE=2 SV=1
Length = 811

Score = 30.4 bits (67), Expect = 4.4
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Frame = -2

Query: 374 TLILACLPLSSTQQDLQGGRQTGTIVDTRRAR*LHVTV*ILGKQTSCLCPIENTLP*SLA 195
TL L L LS +GG ++ + ++ R G Q +E TLP
Sbjct: 248 TLSLTSLGLSMPADPCEGGARSCLVTESARG----------GLQNGQSVDVEETLPSEPE 297

Query: 194 MGTTQ*THRKSSSQKM--TQITRHHKKILDPQARSTTCPLAKQKCRLDKIRPSKIRKNEF 21
G + R ++ ++ + + Q R+ P + PSK R EF
Sbjct: 298 NGALLRSERYQGPRRRACSETLAESRTAVLQQRRAAQLPGGPAAAGEQRASPSKARLKEF 357

Query: 20 IRNCD 6
++ CD
Sbjct: 358 LQQCD 362


>sp|Q9EQT5|TINAL_RAT Tubulointerstitial nephritis antigen-like
OS=Rattus norvegicus GN=Tinagl1 PE=2 SV=1
Length = 467

Score = 29.6 bits (65), Expect = 7.5
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Frame = +3

Query: 18 DEFILPYLGWSYLVKPALLFCKGTCSRSCLWIQDF-LVVPSD------------LSHFLG 158
DE LPYLG + LFC T S C DF L +P + G
Sbjct: 59 DECALPYLGATCYCD---LFCNRTVSDCCPDFWDFCLGIPPPFPPVQGCMHAGRIYPIFG 115

Query: 159 RRFSVCLLCRPHSKASWKC 215
+ C C H K W+C
Sbjct: 116 TYWENCNRCTCHEKGQWEC 134


>sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1
Length = 386

Score = 29.3 bits (64), Expect = 9.8
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1

Query: 7 SQFLMNSFFLILDGRILSSLHFCFARGHVVDLACGSRIFLWCL-VI*VIFWEEDFRCVYC 183
+ F SFF LDGR LH+ RG + CG I C+ + F E F C +C
Sbjct: 301 TSFSTGSFFE-LDGRPFCELHYHHRRGTLCH-GCGQPITGRCISAMGYKFHPEHFVCAFC 358

Query: 184 VVPIAR 201
+ +++
Sbjct: 359 LTQLSK 364


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919748|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_F10.
(483 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******