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BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919724|Adiantum capillus-veneris mRNA, clone: YMU001_000128_D08. (331 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly prote... 49 1e-04 tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol... 49 2e-04 tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-co... 45 0.002 tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acum... 44 0.004 tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.016 tr|Q2QYV4|Q2QYV4_ORYSJ Retrotransposon protein, putative, Ty1-co... 41 0.026 tr|Q259D6|Q259D6_ORYSA H0801D08.16 protein OS=Oryza sativa GN=H0... 41 0.026 tr|Q337R3|Q337R3_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.045 tr|Q6AUV8|Q6AUV8_ORYSJ Integrase core domain containing protein ... 40 0.059 tr|Q2QUC4|Q2QUC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.059 tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O... 40 0.059 tr|Q7XPC3|Q7XPC3_ORYSJ OSJNBa0042N22.18 protein (B1248C03.4 prot... 40 0.077 tr|Q2R3I3|Q2R3I3_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.077 tr|Q9AUP6|Q9AUP6_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 39 0.10 tr|Q8S476|Q8S476_MAIZE Putative Fourf gag/pol protein OS=Zea may... 39 0.10 tr|Q75I44|Q75I44_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10 tr|Q2R459|Q2R459_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10 tr|Q10H09|Q10H09_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10 tr|Q94EV3|Q94EV3_MAIZE Fourf gag/pol protein OS=Zea mays GN=Four... 39 0.13 tr|Q6L5B9|Q6L5B9_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.13 tr|Q60E18|Q60E18_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.13 tr|Q53MY0|Q53MY0_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13 tr|Q53M86|Q53M86_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13 tr|Q2QV75|Q2QV75_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13 tr|Q2QTT2|Q2QTT2_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13 tr|Q2QRY1|Q2QRY1_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13 tr|Q0INI3|Q0INI3_ORYSJ Os12g0446300 protein OS=Oryza sativa subs... 39 0.13 tr|Q94GP9|Q94GP9_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.17 tr|Q7Y188|Q7Y188_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.17 tr|Q10FG1|Q10FG1_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.17
>tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly protein OS=Zea mays GN=Z013I05_10 PE=4 SV=1 Length = 1309
Score = 48.9 bits (115), Expect = 1e-04 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Frame = +1
Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTTQ--ALS 174 N M EG+SV++ L Q L+ +++ G + + FQ +LA LP SWR FVT++ Sbjct: 139 NYKMVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHMKK 198
Query: 175 QMQLQGLVSKIHQEEALRDQSNGSTPVALATHINFRKGG 291 QM L L + I+ EE R +S+ L H+ KGG Sbjct: 199 QMTLTELSAAINVEE--RARSSNKPSQQLQAHV-VEKGG 234
>tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1 Length = 701
Score = 48.5 bits (114), Expect = 2e-04 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVT--TQALSQMQ 183 M + ++V+ + Q +L E+L GM +SE FQ ++ LP +W+ F + +M Sbjct: 153 MVDSKTVISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMN 212
Query: 184 LQGLVSKIHQEEALRDQSN-GSTPVALATHINFRKGGP 294 ++GLV K+ EE R+ G+ +A A NF + GP Sbjct: 213 IEGLVVKLRIEEDNRNAERIGAISMAKA---NFVEHGP 247
>tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g22100 PE=4 SV=1 Length = 1075
Score = 44.7 bits (104), Expect = 0.002 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M G+SVV+ Q L+ E+ S + + +KFQ +++A LP SWR F T + +M Sbjct: 149 MTNGKSVVEQTQELQLLVGELNHSKIALPDKFQVGMVIAKLPPSWRDFATALKHRMEEMT 208
Query: 184 LQGLVSKIHQEEALR 228 + LV+ + EE R Sbjct: 209 MDDLVASLDVEEKAR 223
>tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acuminata GN=G9-pp3 PE=4 SV=1 Length = 521
Score = 43.9 bits (102), Expect = 0.004 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Frame = +1
Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTTQALSQM 180 N ++G ++VK + +Q L ++++ M I ++ Q +LLL++L SW FV T S + Sbjct: 57 NLKFKDGDNIVKHISLFQSLANKLVAMKMNIDDEIQGLLLLSSLSESWETFVVTICNSTL 116
Query: 181 Q----LQGLVSKIHQEEALRDQSNGSTPVALATHINFRKG 288 + + + + E+A R + S+ A T R+G Sbjct: 117 EGTLTIDMVKDSLLNEDARRKEQGESSFGAFVTEKQERRG 156
>tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_006815 PE=4 SV=1 Length = 277
Score = 42.0 bits (97), Expect = 0.016 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M G+S+V+ Q L+ E+ S + + +KFQ +++A LP SWR F T +M Sbjct: 117 MTNGKSMVEQTQELQLLVGELNHSKIALPDKFQVGMVIAKLPPSWRDFATALKHRREEMT 176
Query: 184 LQGLVSKIHQEEALR 228 + LV+ + EE R Sbjct: 177 MDDLVASLDVEEKAR 191
>tr|Q2QYV4|Q2QYV4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g01470 PE=4 SV=1 Length = 999
Score = 41.2 bits (95), Expect = 0.026 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M +G+SVV+ Q L E+ + E+ +KF ++A LP SW F T+ + Sbjct: 142 MVDGRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWTDFATSLKHKRQEFS 201
Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSRQ 321 + L+ + EE R + N + + N +K P+ +NN+++ Sbjct: 202 VTDLIGSLGVEEKARAKDNRGKKIEGGSSANLVQKKNPHASHNNNKK 248
>tr|Q259D6|Q259D6_ORYSA H0801D08.16 protein OS=Oryza sativa GN=H0801D08.16 PE=4 SV=1 Length = 1122
Score = 41.2 bits (95), Expect = 0.026 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M + +SVV+ Q + E+ + + +KF ++A LP SWR+F T + Sbjct: 114 MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173
Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINFRKG 288 ++GL++ + EE R++ ST + N +G Sbjct: 174 VEGLIASLDVEEKAREKDTASTGDGGQSSANVARG 208
>tr|Q337R3|Q337R3_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g31020 PE=4 SV=2 Length = 895
Score = 40.4 bits (93), Expect = 0.045 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +1
Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALS 174 N M + +SVV+ Q + E+ + + +KF ++A LP SWR+F TT Sbjct: 111 NYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTTLKHKRQ 170
Query: 175 QMQLQGLVSKIHQEEALRDQSNGS 246 + ++GL++ EE R++ S Sbjct: 171 EYSVEGLIASFDVEEKAREKDAAS 194
>tr|Q6AUV8|Q6AUV8_ORYSJ Integrase core domain containing protein (Retrotransposon protein, putative, Ty1-copia subclass) OS=Oryza sativa subsp. japonica GN=OSJNBa0091B22.4 PE=4 SV=1 Length = 1232
Score = 40.0 bits (92), Expect = 0.059 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M + +SVV+ Q L E+ + E+S+KF ++A LP SW F T+ + Sbjct: 200 MVDDRSVVEQAHEIQMLAKELENNNCELSDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 259
Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSR 318 + L+ + EE R + N V + N +K P+ +NN + Sbjct: 260 VSDLIGSLGVEEKARAKDNRHKKVEGGSSANMVQKKNPHASHNNKK 305
>tr|Q2QUC4|Q2QUC4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g16730 PE=4 SV=1 Length = 312
Score = 40.0 bits (92), Expect = 0.059 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Frame = +1
Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183 M + +SVV+ Q L E+ + E+S+KF ++A LP SW F T+ + Sbjct: 84 MVDDRSVVEQAHEIQMLAKELENNNCELSDKFVSGGIIAKLPPSWSDFATSLKHKRQEFS 143
Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSR 318 + L+ + EE R + N V + N +K P+ +NN + Sbjct: 144 VSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNPHASHNNKK 189
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