BP919724
Clone id YMU001_000128_D08
Library
Length 331
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACAATACTATGCAAGAAGGCCAATCTGTAGTCAAGTTTCTTGACAATTGGCAGCCACTG
TTAGATGAAGTTCTCATCTCTGGAATGGAGATTTCAGAGAAATTTCAATGTATGCTTCTA
TTGGCGGCTTTACCCGCAAGCTGGAGAGCCTTTGTTACTACTCAAGCCCTGTCCCAGATG
CAATTGCAAGGCCTTGTATCCAAAATCCATCAGGAAGAAGCTTTGAGAGACCAATCTAAT
GGCTCTACTCCAGTGGCTCTAGCCACTCATATCAATTTCAGAAAAGGTGGTCCTAACCAC
CATTACAACAACTCAAGGCAGTAGCATAAAG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 107
Score (bit) 33.9
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919724|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D08.
(331 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 34 0.26
sp|Q474N5|NUSB_RALEJ N utilization substance protein B homolog O... 32 0.76
sp|Q99L90|MCRS1_MOUSE Microspherule protein 1 OS=Mus musculus GN... 29 8.4
sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1 OS=Homo sapiens GN... 29 8.4

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 33.9 bits (76), Expect = 0.26
Identities = 23/107 (21%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M EG + + L+ + L+ ++ G++I E+ + +LLL +LP+S+ TT + ++
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171

Query: 184 LQGLVSKIHQEEALR--DQSNGSTPVALATHINFRKGGPNHHYNNSR 318
L+ + S + E +R ++ G + ++++ N+ + +R
Sbjct: 172 LKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGAR 218


>sp|Q474N5|NUSB_RALEJ N utilization substance protein B homolog
OS=Ralstonia eutropha (strain JMP134) GN=nusB PE=3 SV=1
Length = 167

Score = 32.3 bits (72), Expect = 0.76
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2

Query: 134 PQAGEPLLLLKPCPRCNCKALYPKSIRKKL*ETNLMALLQWL 259
P+ G+P KP R KA PKS R++ E L L QWL
Sbjct: 5 PETGKPAAGTKPAARTEAKAP-PKSARRRSRELALQGLYQWL 45


>sp|Q99L90|MCRS1_MOUSE Microspherule protein 1 OS=Mus musculus
GN=Mcrs1 PE=1 SV=1
Length = 462

Score = 28.9 bits (63), Expect = 8.4
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Frame = +1

Query: 28 VVKFLDNWQPLLDEVLISGM---------EISEKFQCMLLLAALPASWRAFVTTQALSQM 180
V K L W+P D +LI+ + + KF C L + W A + +S++
Sbjct: 128 VTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKL 187

Query: 181 QLQGLVSKIHQEEALRDQS 237
Q + ++H E QS
Sbjct: 188 ACQAM-RQLHPEAIAAIQS 205


>sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1 OS=Homo sapiens
GN=MCRS1 PE=1 SV=1
Length = 462

Score = 28.9 bits (63), Expect = 8.4
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Frame = +1

Query: 28 VVKFLDNWQPLLDEVLISGM---------EISEKFQCMLLLAALPASWRAFVTTQALSQM 180
V K L W+P D +LI+ + + KF C L + W A + +S++
Sbjct: 128 VTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKL 187

Query: 181 QLQGLVSKIHQEEALRDQS 237
Q + ++H E QS
Sbjct: 188 ACQAM-RQLHPEAIAAIQS 205


tr_hit_id Q7XBD8
Definition tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly protein OS=Zea mays
Align length 99
Score (bit) 48.9
E-value 0.0001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919724|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D08.
(331 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly prote... 49 1e-04
tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol... 49 2e-04
tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-co... 45 0.002
tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acum... 44 0.004
tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.016
tr|Q2QYV4|Q2QYV4_ORYSJ Retrotransposon protein, putative, Ty1-co... 41 0.026
tr|Q259D6|Q259D6_ORYSA H0801D08.16 protein OS=Oryza sativa GN=H0... 41 0.026
tr|Q337R3|Q337R3_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.045
tr|Q6AUV8|Q6AUV8_ORYSJ Integrase core domain containing protein ... 40 0.059
tr|Q2QUC4|Q2QUC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.059
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O... 40 0.059
tr|Q7XPC3|Q7XPC3_ORYSJ OSJNBa0042N22.18 protein (B1248C03.4 prot... 40 0.077
tr|Q2R3I3|Q2R3I3_ORYSJ Retrotransposon protein, putative, Ty1-co... 40 0.077
tr|Q9AUP6|Q9AUP6_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 39 0.10
tr|Q8S476|Q8S476_MAIZE Putative Fourf gag/pol protein OS=Zea may... 39 0.10
tr|Q75I44|Q75I44_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10
tr|Q2R459|Q2R459_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10
tr|Q10H09|Q10H09_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.10
tr|Q94EV3|Q94EV3_MAIZE Fourf gag/pol protein OS=Zea mays GN=Four... 39 0.13
tr|Q6L5B9|Q6L5B9_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.13
tr|Q60E18|Q60E18_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.13
tr|Q53MY0|Q53MY0_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13
tr|Q53M86|Q53M86_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13
tr|Q2QV75|Q2QV75_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13
tr|Q2QTT2|Q2QTT2_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13
tr|Q2QRY1|Q2QRY1_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.13
tr|Q0INI3|Q0INI3_ORYSJ Os12g0446300 protein OS=Oryza sativa subs... 39 0.13
tr|Q94GP9|Q94GP9_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.17
tr|Q7Y188|Q7Y188_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.17
tr|Q10FG1|Q10FG1_ORYSJ Retrotransposon protein, putative, Ty1-co... 39 0.17

>tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly protein
OS=Zea mays GN=Z013I05_10 PE=4 SV=1
Length = 1309

Score = 48.9 bits (115), Expect = 1e-04
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = +1

Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTTQ--ALS 174
N M EG+SV++ L Q L+ +++ G + + FQ +LA LP SWR FVT++
Sbjct: 139 NYKMVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHMKK 198

Query: 175 QMQLQGLVSKIHQEEALRDQSNGSTPVALATHINFRKGG 291
QM L L + I+ EE R +S+ L H+ KGG
Sbjct: 199 QMTLTELSAAINVEE--RARSSNKPSQQLQAHV-VEKGG 234


>tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol
PE=4 SV=1
Length = 701

Score = 48.5 bits (114), Expect = 2e-04
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVT--TQALSQMQ 183
M + ++V+ + Q +L E+L GM +SE FQ ++ LP +W+ F + +M
Sbjct: 153 MVDSKTVISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMN 212

Query: 184 LQGLVSKIHQEEALRDQSN-GSTPVALATHINFRKGGP 294
++GLV K+ EE R+ G+ +A A NF + GP
Sbjct: 213 IEGLVVKLRIEEDNRNAERIGAISMAKA---NFVEHGP 247


>tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os03g22100 PE=4 SV=1
Length = 1075

Score = 44.7 bits (104), Expect = 0.002
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M G+SVV+ Q L+ E+ S + + +KFQ +++A LP SWR F T + +M
Sbjct: 149 MTNGKSVVEQTQELQLLVGELNHSKIALPDKFQVGMVIAKLPPSWRDFATALKHRMEEMT 208

Query: 184 LQGLVSKIHQEEALR 228
+ LV+ + EE R
Sbjct: 209 MDDLVASLDVEEKAR 223


>tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa
acuminata GN=G9-pp3 PE=4 SV=1
Length = 521

Score = 43.9 bits (102), Expect = 0.004
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = +1

Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTTQALSQM 180
N ++G ++VK + +Q L ++++ M I ++ Q +LLL++L SW FV T S +
Sbjct: 57 NLKFKDGDNIVKHISLFQSLANKLVAMKMNIDDEIQGLLLLSSLSESWETFVVTICNSTL 116

Query: 181 Q----LQGLVSKIHQEEALRDQSNGSTPVALATHINFRKG 288
+ + + + E+A R + S+ A T R+G
Sbjct: 117 EGTLTIDMVKDSLLNEDARRKEQGESSFGAFVTEKQERRG 156


>tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_006815 PE=4 SV=1
Length = 277

Score = 42.0 bits (97), Expect = 0.016
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M G+S+V+ Q L+ E+ S + + +KFQ +++A LP SWR F T +M
Sbjct: 117 MTNGKSMVEQTQELQLLVGELNHSKIALPDKFQVGMVIAKLPPSWRDFATALKHRREEMT 176

Query: 184 LQGLVSKIHQEEALR 228
+ LV+ + EE R
Sbjct: 177 MDDLVASLDVEEKAR 191


>tr|Q2QYV4|Q2QYV4_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g01470 PE=4 SV=1
Length = 999

Score = 41.2 bits (95), Expect = 0.026
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M +G+SVV+ Q L E+ + E+ +KF ++A LP SW F T+ +
Sbjct: 142 MVDGRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWTDFATSLKHKRQEFS 201

Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSRQ 321
+ L+ + EE R + N + + N +K P+ +NN+++
Sbjct: 202 VTDLIGSLGVEEKARAKDNRGKKIEGGSSANLVQKKNPHASHNNNKK 248


>tr|Q259D6|Q259D6_ORYSA H0801D08.16 protein OS=Oryza sativa
GN=H0801D08.16 PE=4 SV=1
Length = 1122

Score = 41.2 bits (95), Expect = 0.026
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M + +SVV+ Q + E+ + + +KF ++A LP SWR+F T +
Sbjct: 114 MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINFRKG 288
++GL++ + EE R++ ST + N +G
Sbjct: 174 VEGLIASLDVEEKAREKDTASTGDGGQSSANVARG 208


>tr|Q337R3|Q337R3_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g31020 PE=4 SV=2
Length = 895

Score = 40.4 bits (93), Expect = 0.045
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1

Query: 1 NNTMQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALS 174
N M + +SVV+ Q + E+ + + +KF ++A LP SWR+F TT
Sbjct: 111 NYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTTLKHKRQ 170

Query: 175 QMQLQGLVSKIHQEEALRDQSNGS 246
+ ++GL++ EE R++ S
Sbjct: 171 EYSVEGLIASFDVEEKAREKDAAS 194


>tr|Q6AUV8|Q6AUV8_ORYSJ Integrase core domain containing protein
(Retrotransposon protein, putative, Ty1-copia subclass)
OS=Oryza sativa subsp. japonica GN=OSJNBa0091B22.4 PE=4
SV=1
Length = 1232

Score = 40.0 bits (92), Expect = 0.059
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M + +SVV+ Q L E+ + E+S+KF ++A LP SW F T+ +
Sbjct: 200 MVDDRSVVEQAHEIQMLAKELENNNCELSDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 259

Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSR 318
+ L+ + EE R + N V + N +K P+ +NN +
Sbjct: 260 VSDLIGSLGVEEKARAKDNRHKKVEGGSSANMVQKKNPHASHNNKK 305


>tr|Q2QUC4|Q2QUC4_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g16730 PE=4 SV=1
Length = 312

Score = 40.0 bits (92), Expect = 0.059
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1

Query: 10 MQEGQSVVKFLDNWQPLLDEVLISGMEISEKFQCMLLLAALPASWRAFVTT--QALSQMQ 183
M + +SVV+ Q L E+ + E+S+KF ++A LP SW F T+ +
Sbjct: 84 MVDDRSVVEQAHEIQMLAKELENNNCELSDKFVSGGIIAKLPPSWSDFATSLKHKRQEFS 143

Query: 184 LQGLVSKIHQEEALRDQSNGSTPVALATHINF-RKGGPNHHYNNSR 318
+ L+ + EE R + N V + N +K P+ +NN +
Sbjct: 144 VSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNPHASHNNKK 189