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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919711
Clone id YMU001_000128_C07
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGAGACAAAAAGAAAGAGAAGAAAGAAGCGAAGCCAGATGCACAGGATAACTGAAAGGA
CAAAGAGAAGGCCAATGTGGCTTCTAATGTTGTGATTGAGGAGCTGTCAGATGTAGAGAA
CATCTTGTGTGCCACTTTGTCAGATGATGATGCTTATGACCTTGATGCCTCTCTTAATGT
TCATTCACAGGACATGCAGATCACCAAGAGTGATCTTATTGACGCTTTGTTGACTGTCAA
TGATGCATTATCCCAGACTTGGATAGTTGATTCCGGTGCTTCATTTCATGTGACTCCTAT
CAAGGAGTGTTTCTCTACTTTTGATGCAGGCAAACATGGCCATGTATATCTTGGAAACAA
TCATGCATGTTCCATTGAGGGCATTGGCACTGTGCATCTCTCTATAGATGGCACAAATGA
GTTTGTCTTGCATAATGTTAGATATGTGCTGGGAATCAAGAAGAGTCTGCTTTGTGTTGG
TCAGATGGATATGCATGGTTACAGCATCTTGTTTGAGAGAGGA
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 85
Score (bit) 58.2
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919711|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_C07.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    58   2e-08
sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W O...    37   0.044
sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alph...    31   4.0  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 46/85 (54%)
 Frame = +2

Query: 260 WIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHLSIDGTNEFVLHNV 439
           W+VD+ AS H TP+++ F  + AG  G V +GN     I GIG + +  +     VL +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353

Query: 440 RYVLGIKKSLLCVGQMDMHGYSILF 514
           R+V  ++ +L+    +D  GY   F
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYF 378


>sp|P25601|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W
           OS=Saccharomyces cerevisiae GN=TY5B PE=4 SV=1
          Length = 146

 Score = 37.4 bits (85), Expect = 0.044
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +2

Query: 197 QIT-KSDLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACS 373
           QIT KS L     TV    S  WI D+G + H+   +  FS+F          G   +  
Sbjct: 57  QITPKSWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIP 116

Query: 374 IEGIGTVHLSIDGTNEFVLHNVRYVLGIKKSLLCV 478
           I G GTV++   GT +  LH+V YV  +  +L+ V
Sbjct: 117 IMGSGTVNI---GTVQ--LHDVSYVPDLPVNLISV 146


>sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha
           OS=Homo sapiens GN=SCN7A PE=2 SV=1
          Length = 1682

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 416 LCHL*RDAQCQCPQWNMHDCF 354
           +CH+  D  CQ P+W+MHD F
Sbjct: 657 VCHI--DKDCQLPRWHMHDFF 675
tr_hit_id A7P0C8
Definition tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 101
Score (bit) 87.8
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919711|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_C07.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ...    88   3e-16
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    87   5e-16
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    86   9e-16
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis...    86   9e-16
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    86   9e-16
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis...    86   1e-15
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    85   2e-15
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    85   2e-15
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...    85   2e-15
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    85   2e-15
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5AK46|A5AK46_VITVI Putative uncharacterized protein OS=Vitis...    85   3e-15
tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis...    84   3e-15

>tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024858001
           PE=4 SV=1
          Length = 389

 Score = 87.8 bits (216), Expect = 3e-16
 Identities = 42/101 (41%), Positives = 64/101 (63%)
 Frame = +2

Query: 221 DALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHL 400
           DALL V D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G V +
Sbjct: 273 DALLLVVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRI 332

Query: 401 SIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           S+   + ++L  VR++  +K++L+ VGQ+D  G++ILF  G
Sbjct: 333 SLPNGSVWLLEKVRHIPDLKRNLISVGQLDDEGHAILFVGG 373


>tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005765 PE=4 SV=1
          Length = 1261

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/101 (40%), Positives = 63/101 (62%)
 Frame = +2

Query: 221 DALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHL 400
           DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G V +
Sbjct: 236 DALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRI 295

Query: 401 SIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           S+   + ++L  VRY+  ++++L+ VGQ+D  G++ILF  G
Sbjct: 296 SLPNGSVWLLEKVRYIPDLRRNLISVGQLDDEGHAILFVGG 336


>tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035336 PE=4 SV=1
          Length = 1244

 Score = 86.3 bits (212), Expect = 9e-16
 Identities = 40/101 (39%), Positives = 63/101 (62%)
 Frame = +2

Query: 221 DALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHL 400
           DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G V +
Sbjct: 273 DALLLAVDSPLDDWVLDSGASFHTTPXREIIQNYVAGDFGKVYLADGSALDVVGLGDVRI 332

Query: 401 SIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           S+   + ++L  VR++  ++++L+ VGQ+D  G++ILF  G
Sbjct: 333 SLPNGSXWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 373


>tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038889 PE=4 SV=1
          Length = 925

 Score = 86.3 bits (212), Expect = 9e-16
 Identities = 41/104 (39%), Positives = 65/104 (62%)
 Frame = +2

Query: 212 DLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGT 391
           D+ DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G 
Sbjct: 271 DVQDALLFAIDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 330

Query: 392 VHLSIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           V +S+   + ++L  VR++  ++++L+ VGQ+D  G++ILF  G
Sbjct: 331 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 374


>tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024822 PE=4 SV=1
          Length = 1250

 Score = 86.3 bits (212), Expect = 9e-16
 Identities = 41/101 (40%), Positives = 63/101 (62%)
 Frame = +2

Query: 221 DALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHL 400
           DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G V +
Sbjct: 273 DALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRI 332

Query: 401 SIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           S+   + ++L  VR++  +K++L+ VGQ+D  G++ILF  G
Sbjct: 333 SLPNGSVWLLEKVRHIPDLKRNLISVGQLDDEGHAILFVGG 373


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044399 PE=4 SV=1
          Length = 1264

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 40/104 (38%), Positives = 65/104 (62%)
 Frame = +2

Query: 212 DLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGT 391
           ++ DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G 
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 329

Query: 392 VHLSIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           V +S+   + ++L  VR++  ++++L+ VGQ+D  G++ILF  G
Sbjct: 330 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 373


>tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041204 PE=4 SV=1
          Length = 1067

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 41/101 (40%), Positives = 63/101 (62%)
 Frame = +2

Query: 221 DALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGTVHL 400
           DALL V D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G V +
Sbjct: 273 DALLLVVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRI 332

Query: 401 SIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           S+   + ++L  VR++  +K++L+  GQ+D  G++ILF  G
Sbjct: 333 SLPNGSVWLLEKVRHIPDLKRNLISXGQLDDEGHAILFVGG 373


>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037906 PE=4 SV=1
          Length = 1148

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 40/106 (37%), Positives = 65/106 (61%)
 Frame = +2

Query: 206 KSDLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGI 385
           + +++DALL   D+    W++DSGASFH TP +E    + AG  G VYL +     + GI
Sbjct: 267 REEVLDALLLAVDSPLDDWVLDSGASFHTTPYREIIQNYVAGDFGKVYLADGSTLDVVGI 326

Query: 386 GTVHLSIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           G V +S+   + ++L  VR++   +++L+ VGQ+D  G++ILF  G
Sbjct: 327 GDVRISLPNGSVWLLEKVRHIPDPRRNLISVGQLDDEGHAILFVGG 372


>tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032634 PE=4 SV=1
          Length = 1298

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 40/104 (38%), Positives = 65/104 (62%)
 Frame = +2

Query: 212 DLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIEGIGT 391
           ++ DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + G+G 
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGD 329

Query: 392 VHLSIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           V +S+   + ++L  VR++  ++++L+ VGQ+D  G++ILF  G
Sbjct: 330 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 373


>tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028182 PE=4 SV=1
          Length = 815

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 40/108 (37%), Positives = 65/108 (60%)
 Frame = +2

Query: 200 ITKSDLIDALLTVNDALSQTWIVDSGASFHVTPIKECFSTFDAGKHGHVYLGNNHACSIE 379
           +   ++ DALL   D+    W++DSGASFH TP +E    + AG  G VYL +  A  + 
Sbjct: 266 VVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVV 325

Query: 380 GIGTVHLSIDGTNEFVLHNVRYVLGIKKSLLCVGQMDMHGYSILFERG 523
           G+G V +S+   + ++L  VR++  ++++L+ VGQ+D  G+ ILF  G
Sbjct: 326 GLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDNEGHEILFVGG 373