NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919546
Clone id YMU001_000126_D02
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTTAATTCAACTTGATAGCTCAGCTTTTGACTTCAATACAACAAATTTTGTAAGTTCCA
AAGGGGGACCATACTGGCCCTCACGCAAAGCTCAATAAAGACTGCTACAGGGTGACGACA
CCCCATGCCCATATCCAAGCAAAGGTGCCTGAAAAAGCATATAGAAGACAATTTCAGCAT
CAAAGCTACATATTGAATAAGGTGCAATATGCTACATCAGGGTAAAAATCCCCGAGCAAA
AGATGTAGTCTCCAAGCTGAAGGACCCCTGGAATTACACTTCATATTCCAGCAATTCTAA
AAGGGGCCCAGATAAGCTGAGTATCCAGGTTCACATTAATTCTGCAATCATGCATGCAAG
GCATTGTCACTTACTATGTGCCCCTTCACCATTTCACACTTGCACAAGCGATGTGCCTGC
AATTTTCAAATACTGCATAACCTTCTCTGCTACTTGATTAATTTCCTCCTCTCTCTCCTT
GAGCAGCTCTTGAAAGGCATCTTCTGCATTGGTTTCAGGATCTGTATCAACTGCCTCCTT
AAAATACGCATCAACCTTGACGACGCCATTACTCCCATTGCCTGGAGGAG
■■Homology search results ■■ -
sp_hit_id Q7RAV5
Definition sp|Q7RAV5|CDPK3_PLAYO Calcium-dependent protein kinase 3 OS=Plasmodium yoelii yoelii
Align length 76
Score (bit) 32.7
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919546|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D02.
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7RAV5|CDPK3_PLAYO Calcium-dependent protein kinase 3 OS=Plas...    33   1.4  
sp|Q2NUA6|IHFB_SODGM Integration host factor subunit beta OS=Sod...    31   4.0  
sp|Q9Z1P8|ANGL4_MOUSE Angiopoietin-related protein 4 OS=Mus musc...    31   4.0  
sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized tran...    30   6.9  
sp|Q8CE50|SNX30_MOUSE Sorting nexin-30 OS=Mus musculus GN=Snx30 ...    30   6.9  
sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 ...    30   6.9  

>sp|Q7RAV5|CDPK3_PLAYO Calcium-dependent protein kinase 3
           OS=Plasmodium yoelii yoelii GN=CDPK3 PE=3 SV=1
          Length = 538

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 26/76 (34%), Positives = 36/76 (47%)
 Frame = +2

Query: 92  SIKTATG*RHPMPISKQRCLKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPW 271
           +I TAT      P      +KK  + N SIK+ +    + +   KN   KDV  K KDP 
Sbjct: 11  NISTATAYIKGKPKKSIERIKKKKDSNKSIKSQHKFEGSKI-SNKNNELKDV--KSKDPK 67

Query: 272 NYTSYSSNSKRGPDKL 319
           NY SY + + +  D L
Sbjct: 68  NYESYLNKNTKHKDIL 83


>sp|Q2NUA6|IHFB_SODGM Integration host factor subunit beta
           OS=Sodalis glossinidius (strain morsitans) GN=ihfB PE=3
           SV=1
          Length = 94

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 109 RVTTPHAHIQAKVPEKAYRRQFQHQSYILNKVQYATSG*KSPSKRCSLQAEGPLELHFIF 288
           R+   HAHIQAKV E A +   +H +  L           +  +R  ++  G   LH+  
Sbjct: 9   RLAGQHAHIQAKVVEDAVKEMLEHMATTL-----------ASGERIEIRGFGSFSLHYRA 57

Query: 289 QQF*KGPR 312
            +  + P+
Sbjct: 58  PRIGRNPK 65


>sp|Q9Z1P8|ANGL4_MOUSE Angiopoietin-related protein 4 OS=Mus
           musculus GN=Angptl4 PE=2 SV=1
          Length = 410

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 582 GNGSNGVVKVDAYFKEAVDTDPETNAEDAFQEL---LKEREEEINQVAEKVMQ 433
           GN   G    DA FK++ D  PE    +  Q L   LK +  +I Q+ +KV Q
Sbjct: 77  GNACQGPKGKDAPFKDSEDRVPEGQTPETLQSLQTQLKAQNSKIQQLFQKVAQ 129


>sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized
            transglycosylase yomI OS=Bacillus subtilis GN=yomI PE=3
            SV=1
          Length = 2285

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 540  KEAVDTDPETNAEDAFQELLKEREEEINQVAEKVMQY 430
            ++ +D   +T+ E  FQ+ LKER++ I ++ +++ QY
Sbjct: 1972 QDLIDEIDKTDDEAKFQKELKERQDSIQKLTDQINQY 2008


>sp|Q8CE50|SNX30_MOUSE Sorting nexin-30 OS=Mus musculus GN=Snx30
           PE=2 SV=1
          Length = 437

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 106 YRVTTPHAHIQAKVPEKAYRRQFQHQSYILNKVQ 207
           YR+TT    ++  +PE + RR++Q   ++ NK++
Sbjct: 111 YRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLE 144


>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2
            SV=1
          Length = 3298

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 585  PGNGSNGVVKVDAYFKEAVDTDPETNAEDAFQELLKEREEEIN 457
            P  G+NG V       E+   DP+T      + L +E +EEIN
Sbjct: 1676 PDVGANGQVTYGGVSSESFSLDPDTGVLTTLRALDREEQEEIN 1718
tr_hit_id A3TZ18
Definition tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH OS=Oceanicola batsensis HTCC2597
Align length 74
Score (bit) 43.5
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919546|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D02.
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH OS=Oce...    44   0.009
tr|B5UY14|B5UY14_BACCE Putative uncharacterized protein OS=Bacil...    35   2.4  
tr|A5C8W4|A5C8W4_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|Q167Z2|Q167Z2_ROSDO Cell division protein FtsH OS=Roseobacter...    35   4.1  
tr|Q4KD79|Q4KD79_PSEF5 Thermolabile hemolysin VCA0218 , putative...    34   7.1  
tr|A5BYH2|A5BYH2_VITVI Putative uncharacterized protein OS=Vitis...    34   7.1  
tr|A5B4K9|A5B4K9_VITVI Putative uncharacterized protein OS=Vitis...    34   7.1  
tr|A1BHP1|A1BHP1_CHLPD Ste24 endopeptidase OS=Chlorobium phaeoba...    33   9.2  
tr|A9HBC8|A9HBC8_9RHOB Cell division protein FtsH OS=Roseobacter...    33   9.2  

>tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH
           OS=Oceanicola batsensis HTCC2597 GN=OB2597_15680 PE=4
           SV=1
          Length = 639

 Score = 43.5 bits (101), Expect = 0.009
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = -3

Query: 582 GNGSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGT 412
           GNG+ G   V A+ KE ++ + +   EDA+    ++L ER+EE  ++A+ +++Y  + G 
Sbjct: 529 GNGAGGF-SVSAHTKELIEEEVKRMIEDAYNHAYKILTERQEEWERLAQGLLEYETLTGD 587

Query: 411 SLVQV*NGEGAHSK 370
            + +V NGE  +S+
Sbjct: 588 EIKRVMNGEPPNSE 601


>tr|B5UY14|B5UY14_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH1134 GN=BCAH1134_C0389 PE=4 SV=1
          Length = 180

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
 Frame = +2

Query: 167 DNFSIKATY*IRCNMLHQGKN------------PRAKDVVSKLKDPWNYTSYSSNSKRGP 310
           D F   A Y +RCN LH G +              +KD V +L D    TSYS + +   
Sbjct: 67  DRFDGDAVYKLRCNFLHDGSSDIREYMRGKYNQTVSKDFVFELTD--TMTSYSKSWENNE 124

Query: 311 DKLSIQVHINSAIMHARHCHLLC 379
           D  SI++ I         CH +C
Sbjct: 125 DDCSIRIEIGV----IDFCHKMC 143


>tr|A5C8W4|A5C8W4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010107 PE=4 SV=1
          Length = 604

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 26/96 (27%), Positives = 41/96 (42%)
 Frame = +2

Query: 116 RHPMPISKQRCLKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPWNYTSYSSN 295
           R P  I  +  +KKH+   F ++A Y        QGKN R K  V ++  P     +++ 
Sbjct: 401 REPQRIVIKEEMKKHMPPPF-LQALYGKIIQTKSQGKN-RGKTGVCEISQPLRNRHFAAK 458

Query: 296 SKRGPDKLSIQVHINSAIMHARHCHLLCAPSPFHTC 403
             R P  LS ++   +  + A  CH       F +C
Sbjct: 459 PVRSPIALSAKIFAAAKPILAHECHFAAQEPSFGSC 494


>tr|Q167Z2|Q167Z2_ROSDO Cell division protein FtsH OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=ftsH PE=4
           SV=1
          Length = 641

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -3

Query: 576 GSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGTSL 406
           G+     V A  KE ++ + +   +D ++   +++KE E E  ++A+ +++Y  + G  +
Sbjct: 529 GNTAGFSVSANTKELIEEEVQRFIQDGYEWASKIIKENEVEFERLAQGLLEYETLTGEEI 588

Query: 405 VQV*NGE 385
            +V NGE
Sbjct: 589 KRVMNGE 595


>tr|Q4KD79|Q4KD79_PSEF5 Thermolabile hemolysin VCA0218 , putative
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_2697 PE=4 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 282 HIPAILKGAQIS*VSRFTLILQSCMQGIVTYYVPLHHFTLAQAMCLQFSNT 434
           H+PA+++G Q+   +++  IL+  +  ++      HH ++     L FSNT
Sbjct: 192 HVPAVVQGNQVKNATQYQQILEQKLPAVLATLANAHHVSIGYFDHLAFSNT 242


>tr|A5BYH2|A5BYH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035125 PE=4 SV=1
          Length = 575

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 24/91 (26%), Positives = 38/91 (41%)
 Frame = +2

Query: 131 ISKQRCLKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPWNYTSYSSNSKRGP 310
           + K+  +KKH+   F ++A Y        QGKN R K  V ++  P     ++    R  
Sbjct: 281 VIKKELMKKHMPPPF-LQALYDKIIQRKPQGKN-RGKTGVCEISQPLRNRHFAVKPVRSL 338

Query: 311 DKLSIQVHINSAIMHARHCHLLCAPSPFHTC 403
             LS ++   +    A  CH      PF +C
Sbjct: 339 KPLSTKIFAAAKPSLAHECHFAAQEPPFRSC 369


>tr|A5B4K9|A5B4K9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006036 PE=4 SV=1
          Length = 866

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 218 QGKNPRAKDVVSKLKDPWNYTSYSSNSKRGPDKLSIQVHINSAIMHARHCHLLCAPSPFH 397
           QGKN R K  V ++  P     +++   R P  LS ++   +    A  CH      PF 
Sbjct: 621 QGKN-RGKTGVCEISQPLRNRHFAAKPVRSPIALSAKIFAAAKPSLAHECHFAAQEPPFR 679

Query: 398 TCTS 409
           +C S
Sbjct: 680 SCES 683


>tr|A1BHP1|A1BHP1_CHLPD Ste24 endopeptidase OS=Chlorobium
           phaeobacteroides (strain DSM 266) GN=Cpha266_1902 PE=3
           SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 167 LLYAF--SGTFAWIWAWGVVTL*QSLLSFA*GPVW 69
           LL+ F  +G F W+WAWG +TL   LL +   P W
Sbjct: 162 LLWFFEQAGPFGWLWAWGGLTLFTLLLQYV-APAW 195


>tr|A9HBC8|A9HBC8_9RHOB Cell division protein FtsH OS=Roseobacter
           litoralis Och 149 GN=RLO149_17778 PE=4 SV=1
          Length = 624

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -3

Query: 576 GSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGTSL 406
           G+     V A  KE ++ + +   +D ++   +++KE E E  ++A+ +++Y  + G  +
Sbjct: 514 GNTAGFSVSANTKELIEEEVQRFIQDGYESASKIIKENEVEFERLAQGLLEYETLTGEEI 573

Query: 405 VQV*NGE 385
            +V NG+
Sbjct: 574 KRVMNGD 580