BP919397
Clone id YMU001_000124_F07
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGCACATTAATTAAATTGGCATGCTTATTGCTAATCCCCTGCTCCTTTCAGCAATACAAC
AGCCCTTATCAAGAATGGATGACATACAAATATCCAACTTATTTAAGCTTTTATTGCACA
TCGGACGCAAGTAAAGCCCCCTGCCCTCCTTATACTATGCAAAGTATGAAGCAGAGGATG
ATGTATCTGTTAAGATCTCCAATTGTTCCTCATTGAACATAGACTTGTGAATGGCCCAAG
TATCTGCATGCGTTCGTCGAAACTCTGATAAACATTTGCGGACCGTTTCTCTAACTGCTG
CTGAGTTTTCATTTGAAAACTGAACAAGGGTTGTCACTACTTCGGGAAGCCAGCCTGGCA
TATCGTAGGGAACTGATTGCACACATGCACTCAAGCCTAATACCAGAGCATGAACATCAG
TGGCAGTTCCACTATTCACTAACCTTCTTCCTC
■■Homology search results ■■ -
sp_hit_id Q6NRP2
Definition sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4 OS=Xenopus laevis
Align length 94
Score (bit) 85.9
E-value 7.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919397|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F07.
(453 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4 OS=... 86 7e-17
sp|Q5SSW2|PSME4_MOUSE Proteasome activator complex subunit 4 OS=... 84 4e-16
sp|Q14997|PSME4_HUMAN Proteasome activator complex subunit 4 OS=... 84 4e-16
sp|P43583|BLM10_YEAST Proteasome activator BLM10 OS=Saccharomyce... 56 6e-08
sp|Q96S38|KS6C1_HUMAN Ribosomal protein S6 kinase delta-1 OS=Hom... 32 1.7
sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane transl... 30 6.3
sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA... 30 6.3
sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sa... 30 6.4

>sp|Q6NRP2|PSME4_XENLA Proteasome activator complex subunit 4
OS=Xenopus laevis GN=psme4 PE=2 SV=1
Length = 1828

Score = 85.9 bits (211), Expect = 7e-17
Identities = 43/94 (45%), Positives = 57/94 (60%)
Frame = -3

Query: 439 VNSGTATDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEF 260
+ SG HA VLGLSAC+ S PYD+P W+P+++ L N+ + TV+K LS F
Sbjct: 1736 IPSGDLVKRHAGVLGLSACILSSPYDVPTWMPQLLMDLSVHLNDPQP-IEMTVKKTLSNF 1794

Query: 259 RRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
RRTH D W HK F ++QL +LTD S Y+A
Sbjct: 1795 RRTHHDNWQEHKQQFTDDQLIVLTDLLVSPCYYA 1828


>sp|Q5SSW2|PSME4_MOUSE Proteasome activator complex subunit 4 OS=Mus
musculus GN=Psme4 PE=1 SV=1
Length = 1843

Score = 83.6 bits (205), Expect = 4e-16
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGL ACV S PYD+P W+P+++ L N+ + TV+K LS FRRTH D W
Sbjct: 1760 HAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQP-IEMTVKKTLSNFRRTHHDNWQ 1818

Query: 232 IHKSMFNEEQLEILTDTSSSASYFA 158
HK F ++QL +LTD S Y+A
Sbjct: 1819 EHKQQFTDDQLLVLTDLLVSPCYYA 1843


>sp|Q14997|PSME4_HUMAN Proteasome activator complex subunit 4 OS=Homo
sapiens GN=PSME4 PE=1 SV=2
Length = 1843

Score = 83.6 bits (205), Expect = 4e-16
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGL ACV S PYD+P W+P+++ L N+ + TV+K LS FRRTH D W
Sbjct: 1760 HAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQP-IEMTVKKTLSNFRRTHHDNWQ 1818

Query: 232 IHKSMFNEEQLEILTDTSSSASYFA 158
HK F ++QL +LTD S Y+A
Sbjct: 1819 EHKQQFTDDQLLVLTDLLVSPCYYA 1843


>sp|P43583|BLM10_YEAST Proteasome activator BLM10 OS=Saccharomyces
cerevisiae GN=BLM10 PE=1 SV=2
Length = 2143

Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = -3

Query: 433 SGTATDVHALVLGLSACVQSVPY--DMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEF 260
S T +H VLGL A + + PY +P W+P+ ++ L ++ S + + +SEF
Sbjct: 2052 SKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKQLSNLSSWAR-TSGMTGQAAKNTISEF 2110

Query: 259 RRTHADTWAIHKSMFNEEQLEIL 191
++ ADTW ++ FN E+LE L
Sbjct: 2111 KKVRADTWKFDRASFNTEELEDL 2133


>sp|Q96S38|KS6C1_HUMAN Ribosomal protein S6 kinase delta-1 OS=Homo
sapiens GN=RPS6KC1 PE=1 SV=2
Length = 1066

Score = 31.6 bits (70), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3

Query: 316 SNENSAAVRET-VRKCLSEFRRTHADTWAIHKSMFNEEQL 200
S N V+E V K S+F++ H + W IHK++F +L
Sbjct: 38 SRRNPEDVQEIIVWKRYSDFKKLHKELWQIHKNLFRHSEL 77


>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane
translocase subunit TIM44 OS=Saccharomyces cerevisiae
GN=TIM44 PE=1 SV=1
Length = 431

Score = 29.6 bits (65), Expect = 6.3
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Frame = -3

Query: 325 VQFSNENSAAVRETVRKCLSEFRRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA*YKE 146
V FS + A R L FR T W KS +E ++ L D S YK+
Sbjct: 33 VLFSTSTTRAQGGNPRSPLQIFRDTFKKEW--EKSQELQENIKTLQDASGKLGESEAYKK 90

Query: 145 GRGLYLR-----PMCNKSLNKLDICMSSILDK 65
R YL+ + K+L K M I K
Sbjct: 91 AREAYLKAQRGSTIVGKTLKKTGETMEHIATK 122


>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA
helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2
SV=1
Length = 1168

Score = 29.6 bits (65), Expect = 6.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRR-THADTW 236
H L+ + +V P WL EV T +F+N N + + K L + R D W
Sbjct: 1099 HELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLYNRFEKPDEW 1158

Query: 235 AIHK 224
I K
Sbjct: 1159 RISK 1162


>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo
sapiens GN=OTUD4 PE=1 SV=2
Length = 1114

Score = 29.6 bits (65), Expect = 6.4
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1

Query: 34 IPCSFQQYNSPY----QEWMTYKYPTYLSFYCTSDASKAPCPPYTM 159
+P S Q N P Q Y+ P Y F C +A PPY++
Sbjct: 640 VPVSIQAVNQPLMPLPQTLSLYQDPLYPGFPCNEKGDRAIVPPYSL 685


tr_hit_id Q9LTT5
Definition tr|Q9LTT5|Q9LTT5_ARATH Similarity to unknown protein OS=Arabidopsis thaliana
Align length 97
Score (bit) 110.0
E-value 4.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919397|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_F07.
(453 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9LTT5|Q9LTT5_ARATH Similarity to unknown protein OS=Arabidop... 110 4e-23
tr|Q8RXU1|Q8RXU1_ARATH Putative uncharacterized protein At3g1333... 110 4e-23
tr|A7Q9F8|A7Q9F8_VITVI Chromosome chr19 scaffold_66, whole genom... 110 5e-23
tr|Q5Z876|Q5Z876_ORYSJ Proteasome activator subunit 4-like OS=Or... 93 6e-18
tr|Q17971|Q17971_CAEEL Protein C14C10.5, partially confirmed by ... 90 6e-17
tr|A8X773|A8X773_CAEBR Putative uncharacterized protein OS=Caeno... 87 4e-16
tr|Q5ZL75|Q5ZL75_CHICK Putative uncharacterized protein OS=Gallu... 86 7e-16
tr|Q58EF3|Q58EF3_DANRE LOC553346 protein (Fragment) OS=Danio rer... 86 1e-15
tr|B6PAL7|B6PAL7_BRAFL Putative uncharacterized protein OS=Branc... 85 2e-15
tr|B6M800|B6M800_BRAFL Putative uncharacterized protein OS=Branc... 85 2e-15
tr|Q0DCQ3|Q0DCQ3_ORYSJ Os06g0301300 protein OS=Oryza sativa subs... 85 2e-15
tr|B8B0W6|B8B0W6_ORYSI Putative uncharacterized protein OS=Oryza... 85 2e-15
tr|A2ZU29|A2ZU29_ORYSJ Putative uncharacterized protein OS=Oryza... 85 2e-15
tr|B7Q408|B7Q408_IXOSC Proteasome activator complex subunit, put... 85 2e-15
tr|Q4T985|Q4T985_TETNG Chromosome undetermined SCAF7630, whole g... 84 3e-15
tr|Q5EAP2|Q5EAP2_RAT Psme4 protein OS=Rattus norvegicus GN=Psme4... 84 5e-15
tr|Q4R7N5|Q4R7N5_MACFA Testis cDNA, clone: QtsA-14737, similar t... 84 5e-15
tr|A3KMZ1|A3KMZ1_BOVIN PSME4 protein (Fragment) OS=Bos taurus GN... 84 5e-15
tr|B3RKW2|B3RKW2_TRIAD Putative uncharacterized protein OS=Trich... 82 1e-14
tr|A8PKL5|A8PKL5_BRUMA MGC83251 protein, putative OS=Brugia mala... 79 1e-13
tr|A8PKK5|A8PKK5_BRUMA Putative uncharacterized protein OS=Brugi... 79 1e-13
tr|Q4RQ73|Q4RQ73_TETNG Chromosome 17 SCAF15006, whole genome sho... 77 4e-13
tr|A8Q7X1|A8Q7X1_MALGO Putative uncharacterized protein OS=Malas... 75 1e-12
tr|B6KFS8|B6KFS8_TOXGO Putative uncharacterized protein OS=Toxop... 75 2e-12
tr|Q01CB1|Q01CB1_OSTTA Proteasome activator subunit 4-like (ISS)... 74 4e-12
tr|B0CP75|B0CP75_LACBS Predicted protein OS=Laccaria bicolor (st... 74 5e-12
tr|B0CP61|B0CP61_LACBS Predicted protein OS=Laccaria bicolor (st... 74 5e-12
tr|B8BSK4|B8BSK4_THAPS Predicted protein (Fragment) OS=Thalassio... 73 6e-12
tr|Q5CQJ6|Q5CQJ6_CRYPV Very large low complexity protein OS=Cryp... 72 1e-11
tr|Q5CF22|Q5CF22_CRYHO Putative uncharacterized protein OS=Crypt... 72 1e-11

>tr|Q9LTT5|Q9LTT5_ARATH Similarity to unknown protein OS=Arabidopsis
thaliana PE=4 SV=1
Length = 1716

Score = 110 bits (275), Expect = 4e-23
Identities = 56/97 (57%), Positives = 69/97 (71%)
Frame = -3

Query: 448 RRLVNSGTATDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCL 269
R+ ++ + VH VLGL A V SVPYDMP WLPE VT L +F+ E + ++ TV K +
Sbjct: 1621 RKSSSTQSIAGVHGAVLGLVASVLSVPYDMPSWLPEHVTLLARFAGEPTP-IKSTVTKAV 1679

Query: 268 SEFRRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
+EFRRTHADTW I K F E+QLEIL DTSSS+SYFA
Sbjct: 1680 AEFRRTHADTWNIQKDSFTEDQLEILADTSSSSSYFA 1716


>tr|Q8RXU1|Q8RXU1_ARATH Putative uncharacterized protein At3g13330
(Fragment) OS=Arabidopsis thaliana GN=At3g13330 PE=2
SV=1
Length = 180

Score = 110 bits (275), Expect = 4e-23
Identities = 56/97 (57%), Positives = 69/97 (71%)
Frame = -3

Query: 448 RRLVNSGTATDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCL 269
R+ ++ + VH VLGL A V SVPYDMP WLPE VT L +F+ E + ++ TV K +
Sbjct: 85 RKSSSTQSIAGVHGAVLGLVASVLSVPYDMPSWLPEHVTLLARFAGEPTP-IKSTVTKAV 143

Query: 268 SEFRRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
+EFRRTHADTW I K F E+QLEIL DTSSS+SYFA
Sbjct: 144 AEFRRTHADTWNIQKDSFTEDQLEILADTSSSSSYFA 180


>tr|A7Q9F8|A7Q9F8_VITVI Chromosome chr19 scaffold_66, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00033457001
PE=4 SV=1
Length = 108

Score = 110 bits (274), Expect = 5e-23
Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Frame = -3

Query: 448 RRLVNSGTA-TDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKC 272
+R +N G + +H VL L+A V SVPYDMP WLPE VT L F E S V+ TV K
Sbjct: 12 QRNLNPGQSIASIHGAVLALAASVLSVPYDMPSWLPEHVTLLAHFVREPSP-VKSTVTKA 70

Query: 271 LSEFRRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
++EFRRTHADTW + K F+EEQLE+L DTSSS+SYFA
Sbjct: 71 VAEFRRTHADTWNVQKDSFSEEQLEVLADTSSSSSYFA 108


>tr|Q5Z876|Q5Z876_ORYSJ Proteasome activator subunit 4-like OS=Oryza
sativa subsp. japonica GN=OJ1217_C01.10 PE=4 SV=1
Length = 1818

Score = 93.2 bits (230), Expect = 6e-18
Identities = 50/102 (49%), Positives = 63/102 (61%), Gaps = 16/102 (15%)
Frame = -3

Query: 415 VHALVLGLSACVQSVPYDMPG----------------WLPEVVTTLVQFSNENSAAVRET 284
+H VL L+A V SVPYDMP WLP VT L +F E S ++ T
Sbjct: 1718 IHGAVLALTASVLSVPYDMPRYLRDFNPCLFRLKRTIWLPSHVTLLARFIREPSP-IKST 1776

Query: 283 VRKCLSEFRRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
V K ++EF+RTHADTW+I K F E++LE+L DTSSS+SYFA
Sbjct: 1777 VTKAVAEFKRTHADTWSIQKEAFTEDELEVLRDTSSSSSYFA 1818


>tr|Q17971|Q17971_CAEEL Protein C14C10.5, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=C14C10.5
PE=2 SV=1
Length = 1908

Score = 89.7 bits (221), Expect = 6e-17
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGLSA V + PY +P +LP V+ T+ +F+ + SA +RE V++ LSEF+RTH D+W
Sbjct: 1824 HAGVLGLSAIVLAFPYSVPEFLPGVLMTICRFATDKSATIREAVKRTLSEFKRTHQDSWR 1883

Query: 232 IHKSMFNEEQLEILTDTSSSASYF 161
H+ FNE+QL +L D S +Y+
Sbjct: 1884 EHEQQFNEDQLMVLRDLLISPNYY 1907


>tr|A8X773|A8X773_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG08524 PE=4 SV=2
Length = 1917

Score = 87.0 bits (214), Expect = 4e-16
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = -3

Query: 436 NSGTATDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFR 257
NS H V+GLSA V + PY +P LP V+ T+ +F+ + +A +RE V++ LSEF+
Sbjct: 1825 NSQDMVQAHGGVMGLSAIVLAFPYSVPPLLPGVLMTICRFATDKNAIIREAVKRTLSEFK 1884

Query: 256 RTHADTWAIHKSMFNEEQLEILTDTSSSASYF 161
RTH D+W H+ FNE+QL +L D S +Y+
Sbjct: 1885 RTHQDSWREHEQQFNEDQLMVLRDLLISPNYY 1916


>tr|Q5ZL75|Q5ZL75_CHICK Putative uncharacterized protein OS=Gallus
gallus GN=RCJMB04_7f10 PE=2 SV=1
Length = 220

Score = 86.3 bits (212), Expect = 7e-16
Identities = 43/94 (45%), Positives = 57/94 (60%)
Frame = -3

Query: 439 VNSGTATDVHALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEF 260
+ SG HA VLGLSAC+ S PYD+P W+P+++ L N+ + TV+K LS F
Sbjct: 128 IPSGDLVKRHAGVLGLSACILSSPYDVPTWMPQLLMDLSAHLNDPQP-IEMTVKKTLSNF 186

Query: 259 RRTHADTWAIHKSMFNEEQLEILTDTSSSASYFA 158
RRTH D W HK F ++QL +LTD S Y+A
Sbjct: 187 RRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 220


>tr|Q58EF3|Q58EF3_DANRE LOC553346 protein (Fragment) OS=Danio rerio
GN=LOC553346 PE=2 SV=1
Length = 286

Score = 85.5 bits (210), Expect = 1e-15
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGLSAC+ S PYD+P W+P+++ L N+ + TV+K LS FRRTH D W
Sbjct: 203 HAGVLGLSACILSSPYDVPTWMPQLLMDLSAHLNDTQP-IEMTVKKTLSNFRRTHHDNWL 261

Query: 232 IHKSMFNEEQLEILTDTSSSASYFA 158
HK F ++QL +LTD S Y+A
Sbjct: 262 EHKQQFTDDQLVVLTDLLVSPCYYA 286


>tr|B6PAL7|B6PAL7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_104713 PE=4 SV=1
Length = 1793

Score = 85.1 bits (209), Expect = 2e-15
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGL ACV S PYD+P W+P+++ L N+ + TV+K LS+FRRTH D W
Sbjct: 1710 HAGVLGLCACVLSYPYDVPEWMPQLLLELGDHLNDPQP-IAGTVKKTLSDFRRTHHDNWQ 1768

Query: 232 IHKSMFNEEQLEILTDTSSSASYFA 158
HK F E+QL +LTD S SY+A
Sbjct: 1769 EHKQRFTEDQLCMLTDLLVSPSYYA 1793


>tr|B6M800|B6M800_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_280538 PE=4 SV=1
Length = 1825

Score = 85.1 bits (209), Expect = 2e-15
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = -3

Query: 412 HALVLGLSACVQSVPYDMPGWLPEVVTTLVQFSNENSAAVRETVRKCLSEFRRTHADTWA 233
HA VLGL ACV S PYD+P W+P+++ L N+ + TV+K LS+FRRTH D W
Sbjct: 1742 HAGVLGLCACVLSYPYDVPEWMPQLLLELGDHLNDPQP-IAGTVKKTLSDFRRTHHDNWQ 1800

Query: 232 IHKSMFNEEQLEILTDTSSSASYFA 158
HK F E+QL +LTD S SY+A
Sbjct: 1801 EHKQRFTEDQLCMLTDLLVSPSYYA 1825