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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919389
Clone id YMU001_000124_E11
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000124_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACGGATGCAGATGGTGAGAAACCTGCTGGAATCCAAAGAAGTAGCTCGAAGAATGCTGTG
TGGAGAGCTCCAATGGAGGGTAAAGAGAGAGAGCAGGCCATTGCTGAAGCAAGGGTGTGG
GGAGAAGCTTGGAGAGAGAAAAGAGGAGGCTCCAGAGGGGAAAAGACTGATGAATGAAAG
GAGTCGCAATTCACTTGCTTAAATATACACTGACAAAGTTTATGAGAGGGATTGCATATA
CCCCTTTTGATTGGAGAGTTTAGATTTTGCGGATCCACATCGATGGTTGGACCTGGAAGG
GATGTTTGTGATGACATACAGGGTCAGTCGGATGTGGCATGTTGCCTGTTTCACCAAAGC
AAAGGAGCGTTTGTATATATGGGGGATGAATAAAGAGCACATTGCATGGTGTGCTTTCAC
CCTTTCTAGGGGTATCATCTGGACAAAACCACTGCTGCCACTGGAATTGACATCTTTCTT
AAGTCGTCTACATGCACGACTTTCGGGTGCTCT
■■Homology search results ■■ -
sp_hit_id Q9FE20
Definition sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana
Align length 39
Score (bit) 34.3
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919389|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_E11.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Ara...    34   0.35 
sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS...    32   2.2  
sp|P02547|NFL_PIG Neurofilament light polypeptide OS=Sus scrofa ...    31   3.9  
sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel sub...    31   3.9  
sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus...    30   5.1  
sp|Q6J1I8|RN114_PIG RING finger protein 114 OS=Sus scrofa GN=RNF...    30   5.1  
sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus gen...    30   6.5  
sp|Q9DHD6|POLG_HCVJP Genome polyprotein OS=Hepatitis C virus gen...    30   8.5  
sp|O73606|KCNG2_CHICK Potassium voltage-gated channel subfamily ...    30   8.5  

>sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1
           OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
          Length = 456

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 28  GIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKR 144
           G ++  S     R       RE+A+AEA++WGE+ REKR
Sbjct: 404 GSEKEDSPRETARILNRDINRERAVAEAKMWGESLREKR 442


>sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog
           OS=Dictyostelium discoideum GN=wdr24 PE=3 SV=1
          Length = 1023

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 317 YRVSRMWHVA-CFTKAKERLYIWGMNKEHIAWCAFTLSR----GIIWTKP 451
           +R    WH+A C +    +++IW + K +I   +FT  R    G+IW  P
Sbjct: 255 WRPGNKWHIASCSSIVDFQIHIWDVKKPYIPLFSFTDHRDVPTGLIWKSP 304


>sp|P02547|NFL_PIG Neurofilament light polypeptide OS=Sus scrofa
           GN=NEFL PE=1 SV=3
          Length = 549

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 67  APMEGKEREQAIAEARVWGEAWREKRGGSRGEKTDE*KESQ 189
           A  EGKE+E+A AEA    E  +E+   +  E+++E KE +
Sbjct: 476 AEEEGKEKEEAEAEAEAEEEGAQEEEEAAEKEESEEAKEEE 516


>sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel
           subunit alpha-1I OS=Rattus norvegicus GN=Cacna1i PE=2
           SV=3
          Length = 2201

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 4   DADGEKPAGIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKRGGSRG 159
           +A+G+ P   +   S +        GKE EQ    AR+ G+ WRE R   RG
Sbjct: 549 EANGDGPQSSEDGVSSDL-------GKEEEQEDGAARLCGDVWRETREKLRG 593


>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus
           GN=Rnf114 PE=2 SV=1
          Length = 229

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = -1

Query: 510 APESRACRRLKKDVNSSGSS--GFVQMIPLERVKAHHAMCSLFIPHIYKRSFALVKQATC 337
           AP  RA   L++ + S  +S  G  +   L +++AH A CS +  +I +   A  K A+ 
Sbjct: 73  APGVRAAE-LERQIESIETSCHGCRKDFVLSKIRAHVASCSKYQSYIMEGVKATTKDASL 131

Query: 336 HIRLTLYVITNIPSRSNHRCGSAKSKLSNQKGYMQ 232
             R       N+P+R    C     K  +Q+G ++
Sbjct: 132 QQR-------NVPNRYTFPCPYCPEKNFDQEGLVE 159


>sp|Q6J1I8|RN114_PIG RING finger protein 114 OS=Sus scrofa GN=RNF114
           PE=2 SV=1
          Length = 228

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = -1

Query: 510 APESRACRRLKKDVNSSGSS--GFVQMIPLERVKAHHAMCSLFIPHIYKRSFALVKQATC 337
           AP  RA   L++ + S+ +S  G  +   L +++AH A CS +  +I +   A  K A+ 
Sbjct: 72  APGVRAVE-LERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASL 130

Query: 336 HIRLTLYVITNIPSRSNHRCGSAKSKLSNQKGYMQ 232
             R       N+P+R    C     K  +Q+G ++
Sbjct: 131 QPR-------NVPNRYTFPCPYCPEKNFDQEGLVE 158


>sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus
           genotype 2b (isolate HC-J8) PE=1 SV=3
          Length = 3033

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 329 RMWHVAC---FTKAKERLYIWGMNKEHIAWCAFT 421
           R+WH  C   FT  K R+Y+ G+     A C FT
Sbjct: 618 RLWHYPCTVNFTIFKARMYVGGVEHRFSAACNFT 651


>sp|Q9DHD6|POLG_HCVJP Genome polyprotein OS=Hepatitis C virus
           genotype 2b (isolate JPUT971017) PE=3 SV=3
          Length = 3033

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 329 RMWHVAC---FTKAKERLYIWGMNKEHIAWCAFT 421
           R+WH  C   FT  K R+Y+ G+     A C FT
Sbjct: 618 RLWHYPCTVNFTIFKVRMYVGGVEHRFSAACNFT 651


>sp|O73606|KCNG2_CHICK Potassium voltage-gated channel subfamily G
           member 2 OS=Gallus gallus GN=KCNG2 PE=2 SV=1
          Length = 518

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 308 VMTYRVS---RMWHVACFTKAKERLYIWGMNKEHIAWC 412
           +MT+  +   R+    C    +E L  WG+ ++H+ WC
Sbjct: 121 IMTFLTAGKLRLLREMCALSFQEELVYWGIEEDHLEWC 158
tr_hit_id A9TSM1
Definition tr|A9TSM1|A9TSM1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 45
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919389|Adiantum capillus-veneris mRNA, clone:
YMU001_000124_E11.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TSM1|A9TSM1_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9STC4|A9STC4_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.018
tr|A9STB9|A9STB9_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.018
tr|B6SVK8|B6SVK8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.023
tr|A7QUT5|A7QUT5_VITVI Chromosome chr1 scaffold_180, whole genom...    40   0.052
tr|A9U3S7|A9U3S7_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.068
tr|Q3E9E7|Q3E9E7_ARATH Uncharacterized protein At5g18610.1 (Prot...    40   0.089
tr|A0MFG6|A0MFG6_ARATH Putative uncharacterized protein (Fragmen...    40   0.089
tr|Q7XVM0|Q7XVM0_ORYSJ OSJNBa0072K14.3 protein OS=Oryza sativa s...    38   0.26 
tr|Q0JDM3|Q0JDM3_ORYSJ Os04g0393900 protein OS=Oryza sativa subs...    38   0.26 
tr|Q01LB3|Q01LB3_ORYSA H0718E12.2 protein OS=Oryza sativa GN=H07...    38   0.26 
tr|B8AT94|B8AT94_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.26 
tr|A7NW73|A7NW73_VITVI Chromosome chr5 scaffold_2, whole genome ...    38   0.26 
tr|A3ATC4|A3ATC4_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.26 
tr|B6TEK0|B6TEK0_MAIZE Protein kinase APK1A OS=Zea mays PE=2 SV=1      36   0.98 
tr|Q5NAV8|Q5NAV8_ORYSJ Putative uncharacterized protein P0462H08...    36   1.3  
tr|B8AC91|B8AC91_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|B7EDA1|B7EDA1_ORYSJ cDNA clone:J013100E20, full insert sequen...    36   1.3  
tr|A2ZRF9|A2ZRF9_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|Q6K603|Q6K603_ORYSJ Os02g0513000 protein OS=Oryza sativa subs...    35   2.2  
tr|A7P9Z0|A7P9Z0_VITVI Chromosome chr14 scaffold_9, whole genome...    35   2.2  
tr|A5AMX6|A5AMX6_VITVI Putative uncharacterized protein OS=Vitis...    35   2.2  
tr|A2X5B3|A2X5B3_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.2  
tr|B0ZXC2|B0ZXC2_ARATH PBS1 (Fragment) OS=Arabidopsis thaliana G...    35   2.9  
tr|B2BDW4|B2BDW4_ARALY AvrPphB susceptible 1 OS=Arabidopsis lyra...    34   3.7  
tr|B2BDM6|B2BDM6_ARATH AvrPphB susceptible 1 OS=Arabidopsis thal...    34   3.7  
tr|B2BDM5|B2BDM5_ARATH AvrPphB susceptible 1 OS=Arabidopsis thal...    34   3.7  
tr|B0ZXL3|B0ZXL3_ARATH PBS1 (Fragment) OS=Arabidopsis thaliana G...    34   3.7  
tr|B0ZXC4|B0ZXC4_ARATH PBS1 (Fragment) OS=Arabidopsis thaliana G...    34   3.7  
tr|B0ZXC3|B0ZXC3_ARATH PBS1 (Fragment) OS=Arabidopsis thaliana G...    34   3.7  

>tr|A9TSM1|A9TSM1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171700 PE=4 SV=1
          Length = 456

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +1

Query: 16  EKPAGIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKRGG 150
           + P  ++R+ +     +  +  +ERE+A+AEARVWGE WREK+ G
Sbjct: 409 DSPRAVRRTGTARDGVKPHIPTRERERAVAEARVWGENWREKQRG 453


>tr|A9STC4|A9STC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_135047 PE=4 SV=1
          Length = 441

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +1

Query: 82  KEREQAIAEARVWGEAWREKRGGS 153
           +ERE+A+AEARVWGE WRE++ G+
Sbjct: 417 RERERAVAEARVWGENWRERKRGT 440


>tr|A9STB9|A9STB9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_135049 PE=4 SV=1
          Length = 393

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +1

Query: 82  KEREQAIAEARVWGEAWREKRGGS 153
           +ERE+A+AEARVWGE WRE++ G+
Sbjct: 369 RERERAVAEARVWGENWRERKRGA 392


>tr|B6SVK8|B6SVK8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 486

 Score = 41.6 bits (96), Expect = 0.023
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +1

Query: 67  APMEGKEREQAIAEARVWGEAWREKRGGSRG 159
           A   G++RE+ +AEA++WGE WREKR  ++G
Sbjct: 447 AANRGQDRERMVAEAKMWGENWREKRRAAQG 477


>tr|A7QUT5|A7QUT5_VITVI Chromosome chr1 scaffold_180, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006972001
           PE=4 SV=1
          Length = 464

 Score = 40.4 bits (93), Expect = 0.052
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 28  GIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKR 144
           G +R  S     R      +RE+A+AEA++WGE WREKR
Sbjct: 413 GSEREDSPRETARMLNRDLDRERAVAEAKMWGENWREKR 451


>tr|A9U3S7|A9U3S7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_155699 PE=4 SV=1
          Length = 374

 Score = 40.0 bits (92), Expect = 0.068
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 82  KEREQAIAEARVWGEAWREKRGG 150
           +ERE+A+AEARVWGE WR+++ G
Sbjct: 350 RERERAVAEARVWGENWRDRQRG 372


>tr|Q3E9E7|Q3E9E7_ARATH Uncharacterized protein At5g18610.1 (Protein
           kinase family protein) OS=Arabidopsis thaliana
           GN=At5g18610 PE=1 SV=1
          Length = 513

 Score = 39.7 bits (91), Expect = 0.089
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = +1

Query: 1   TDADGEK-----PAGIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKRGGSRG 159
           +D +G++     PA + RSS      R      +RE+A+AEA+VWGE WRE++  + G
Sbjct: 451 SDLEGQESQRGSPASVGRSSRGTPRNR----DLDRERAVAEAKVWGENWRERKRATNG 504


>tr|A0MFG6|A0MFG6_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 514

 Score = 39.7 bits (91), Expect = 0.089
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = +1

Query: 1   TDADGEK-----PAGIQRSSSKNAVWRAPMEGKEREQAIAEARVWGEAWREKRGGSRG 159
           +D +G++     PA + RSS      R      +RE+A+AEA+VWGE WRE++  + G
Sbjct: 451 SDLEGQESQRGSPASVGRSSRGTPRNR----DLDRERAVAEAKVWGENWRERKRATNG 504


>tr|Q7XVM0|Q7XVM0_ORYSJ OSJNBa0072K14.3 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0072K14.3 PE=4 SV=1
          Length = 662

 Score = 38.1 bits (87), Expect = 0.26
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 25  AGIQRSSSKNAVWRAPMEG--KEREQAIAEARVWGEAWREKR 144
           +G +  SSK++     + G   +RE+ +AEA++WGE WREKR
Sbjct: 432 SGHKSPSSKDSPREQQLPGILNDRERMVAEAKMWGENWREKR 473


>tr|Q0JDM3|Q0JDM3_ORYSJ Os04g0393900 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0393900 PE=4 SV=1
          Length = 484

 Score = 38.1 bits (87), Expect = 0.26
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 25  AGIQRSSSKNAVWRAPMEG--KEREQAIAEARVWGEAWREKR 144
           +G +  SSK++     + G   +RE+ +AEA++WGE WREKR
Sbjct: 422 SGHKSPSSKDSPREQQLPGILNDRERMVAEAKMWGENWREKR 463