BP919260
Clone id YMU001_000123_A09
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000123_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGCAGGAATTGTGCAGAGCTGGGGGCAAAGTTAGAGACCAGATAGTATTGGTTTTTCTTT
GATCCAAGAGCCCGTGCAAATTTCATATCACCAAAATTGGCATCAAAGTTGGACATTCGT
GCAGAGGAGATGGGTATGACAGGTGAAGCAAGTTTGCCATGCCCAGGTCATTCGGAGCCT
GTTAATCCCATTTTGGGGAAAATTTGTTTGCATATTCAGAATTATGTGGATGCAGAAGAA
TTTCATATTATGCCACTTGAGGGTTGTGATGTGTTATTGGGTGTTAAAGGTTACATGCTA
TATTGTATACTTACAACAAAAAGATTACCCTTGTACATAGAGGAATGACTCATGTCCTTG
AAGTAAAGCTCAAAGGCGAGTCTGTTCCAGTTGTTTCTGCTTTTGCTATTTCATCTGTAA
TAAAGAATCATCTTTCTGCATACTTGATCTTTGCAAAAGAAGTACCTGA
■■Homology search results ■■ -
sp_hit_id Q84W91
Definition sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein ZFN-like 1 OS=Arabidopsis thaliana
Align length 60
Score (bit) 31.6
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919260|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A09.
(469 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein... 32 1.8
sp|Q91VL8|TE2IP_MOUSE Telomeric repeat-binding factor 2-interact... 32 1.8
sp|Q1B370|PUR7_MYCSS Phosphoribosylaminoimidazole-succinocarboxa... 31 3.1
sp|A1ULY1|PUR7_MYCSK Phosphoribosylaminoimidazole-succinocarboxa... 31 3.1
sp|A3Q6D1|PUR7_MYCSJ Phosphoribosylaminoimidazole-succinocarboxa... 31 3.1
sp|P26591|GLRK_LYMST Glutamate receptor OS=Lymnaea stagnalis PE=... 30 4.0
sp|Q07E24|MET_MUSPF Hepatocyte growth factor receptor OS=Mustela... 30 6.9
sp|P97523|MET_RAT Hepatocyte growth factor receptor OS=Rattus no... 29 9.1
sp|Q2IBD8|MET_PONAB Hepatocyte growth factor receptor OS=Pongo a... 29 9.1
sp|Q2QLE0|MET_PIG Hepatocyte growth factor receptor OS=Sus scrof... 29 9.1
sp|Q2QLF1|MET_PANTR Hepatocyte growth factor receptor OS=Pan tro... 29 9.1
sp|Q07E37|MET_NEONE Hepatocyte growth factor receptor OS=Neofeli... 29 9.1
sp|P16056|MET_MOUSE Hepatocyte growth factor receptor OS=Mus mus... 29 9.1
sp|Q2QL89|MET_MICMU Hepatocyte growth factor receptor OS=Microce... 29 9.1
sp|Q07DY1|MET_HYLLE Hepatocyte growth factor receptor OS=Hylobat... 29 9.1
sp|P08581|MET_HUMAN Hepatocyte growth factor receptor OS=Homo sa... 29 9.1
sp|Q2QLA9|MET_HORSE Hepatocyte growth factor receptor OS=Equus c... 29 9.1
sp|Q2IBF2|MET_GORGO Hepatocyte growth factor receptor OS=Gorilla... 29 9.1
sp|A0M8S8|MET_FELCA Hepatocyte growth factor receptor OS=Felis s... 29 9.1
sp|Q2IBG7|MET_EULMM Hepatocyte growth factor receptor OS=Eulemur... 29 9.1
sp|Q75ZY9|MET_CANFA Hepatocyte growth factor receptor OS=Canis f... 29 9.1

>sp|Q84W91|ZFNL1_ARATH Zinc finger CCCH domain-containing protein
ZFN-like 1 OS=Arabidopsis thaliana GN=At2g47850 PE=2
SV=2
Length = 468

Score = 31.6 bits (70), Expect = 1.8
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3

Query: 72 PCKFHITKIGIKVGHSCRGDGYDR*SKFAMPRSFGAC*SHFGENLFAYSELCGCRRISYY 251
PC+F++ K G SC KF P++ G SH N++ Y G SYY
Sbjct: 95 PCQFYLKTGTCKFGASC---------KFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYY 145


>sp|Q91VL8|TE2IP_MOUSE Telomeric repeat-binding factor 2-interacting
protein 1 OS=Mus musculus GN=Terf2ip PE=1 SV=1
Length = 393

Score = 31.6 bits (70), Expect = 1.8
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +1

Query: 106 KLDIRAEEMGMTGEASLPCPGHS-----EP-VNPILGKICLHIQNYVDAEEFHIM 252
KLD+ A +G+T +AS P PG S EP P+ G+I Y DAE+ I+
Sbjct: 93 KLDLEAYRLGLTEQASDPKPGASTEGSTEPEPQPLTGRIA-----YTDAEDVAIL 142


>sp|Q1B370|PUR7_MYCSS
Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Mycobacterium sp. (strain MCS) GN=purC PE=3 SV=1
Length = 297

Score = 30.8 bits (68), Expect = 3.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1

Query: 73 GLLDQRKTNTIWSLTLPPAL 14
GL+D RKT T+ LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|A1ULY1|PUR7_MYCSK
Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Mycobacterium sp. (strain KMS) GN=purC PE=3 SV=1
Length = 297

Score = 30.8 bits (68), Expect = 3.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1

Query: 73 GLLDQRKTNTIWSLTLPPAL 14
GL+D RKT T+ LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|A3Q6D1|PUR7_MYCSJ
Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Mycobacterium sp. (strain JLS) GN=purC PE=3 SV=1
Length = 297

Score = 30.8 bits (68), Expect = 3.1
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1

Query: 73 GLLDQRKTNTIWSLTLPPAL 14
GL+D RKT T+ LTLPP L
Sbjct: 110 GLIDYRKTGTLCGLTLPPGL 129


>sp|P26591|GLRK_LYMST Glutamate receptor OS=Lymnaea stagnalis PE=2
SV=1
Length = 917

Score = 30.4 bits (67), Expect = 4.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3

Query: 303 LYTYNKKITLVHRGMTHVLEVKLKGES--VPVVSAFAISSVIKNHLS 437
L + +I + +R +HV KLK ++ + V +FA+S+ + +HLS
Sbjct: 38 LTAFRHEIHMFNRAYSHVYRYKLKNDTTILDVTDSFAVSNALCHHLS 84


>sp|Q07E24|MET_MUSPF Hepatocyte growth factor receptor OS=Mustela
putorius furo GN=MET PE=3 SV=1
Length = 1382

Score = 29.6 bits (65), Expect = 6.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
+DA+ FH + C V G+ YM L CILT KR
Sbjct: 270 LDAQTFHTRVIRFCSVDSGLHSYMEMPLECILTEKR 305


>sp|P97523|MET_RAT Hepatocyte growth factor receptor OS=Rattus
norvegicus GN=Met PE=1 SV=1
Length = 1382

Score = 29.3 bits (64), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
+DA+ FH + C V G+ YM L CILT KR
Sbjct: 270 LDAQTFHTRIIRFCSVDSGLHSYMEMPLECILTEKR 305


>sp|Q2IBD8|MET_PONAB Hepatocyte growth factor receptor OS=Pongo
abelii GN=MET PE=3 SV=1
Length = 1390

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
+DA+ FH + C + G+ YM L CILT KR
Sbjct: 269 LDAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKR 304


>sp|Q2QLE0|MET_PIG Hepatocyte growth factor receptor OS=Sus scrofa
GN=MET PE=2 SV=1
Length = 1381

Score = 29.3 bits (64), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1

Query: 226 VDAEEFHIMPLEGCDVLLGVKGYM---LYCILTTKR 324
+DA+ FH + C V G+ YM L CILT KR
Sbjct: 270 LDAQTFHTRIIRFCSVDSGLHSYMEMPLECILTEKR 305


tr_hit_id Q0W3N0
Definition tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein OS=Uncultured methanogenic archaeon RC-I
Align length 82
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919260|Adiantum capillus-veneris mRNA, clone:
YMU001_000123_A09.
(469 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein OS=... 34 4.2
tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genom... 33 5.5
tr|A0DL05|A0DL05_PARTE Chromosome undetermined scaffold_55, whol... 33 7.2
tr|A0BXZ0|A0BXZ0_PARTE Chromosome undetermined scaffold_135, who... 33 9.4

>tr|Q0W3N0|Q0W3N0_UNCMA Predicted signal transduction protein
OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_12260
PE=4 SV=1
Length = 610

Score = 33.9 bits (76), Expect = 4.2
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1

Query: 61 DPRARANFISPKLASKLDIR-AEEMGMTGEASLPCPGHSEPVNPILGKICLHIQNYVDAE 237
D R +ISP++ + A+ +G T E L PGH+ + + +I ++Y +
Sbjct: 248 DSAGRFTYISPRIKDMMGYEPADFIGKTIEGFL-APGHARDIIDNVAQIFADPKHY-SLQ 305

Query: 238 EFHIMPLEGCDVLLGVKGYMLY 303
E H++ +G +++L G +LY
Sbjct: 306 ETHVLHRDGHEIILEANGTVLY 327


>tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00008595001
PE=4 SV=1
Length = 150

Score = 33.5 bits (75), Expect = 5.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1

Query: 61 DPRARANFISPKLASKLDIRAEE-----MGMTGEASLPCPGHSEPVNPILGKICLHIQNY 225
D + NF+ K+A + +++E M ++ L P V L +Q
Sbjct: 73 DSGSTHNFLHHKIAKIIGLKSERSCLFSMVVSNGERLSSPRRCNEVK-------LSLQGI 125

Query: 226 VDAEEFHIMPLEGCDVLLGVK 288
+F ++PLEGCDV+LGV+
Sbjct: 126 PIKVDFFLLPLEGCDVVLGVQ 146


>tr|A0DL05|A0DL05_PARTE Chromosome undetermined scaffold_55, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00018039001 PE=4 SV=1
Length = 496

Score = 33.1 bits (74), Expect = 7.2
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3

Query: 270 CVIGC*RL-HAILYTYNKKITLVHRGMTHVLEVKLKGESVPVVSAFAISSVIKNHLSAYL 446
C++G +L H +LY+YN+++ L + T +L+ K VS + +++ H S Y
Sbjct: 221 CLMGIRQLNHFLLYSYNQEVQLFTQAYTFLLKKANKKHYKGRVSPNELIKILEKHFSIYE 280

Query: 447 IFAKEV 464
+ KE+
Sbjct: 281 MHDKEL 286


>tr|A0BXZ0|A0BXZ0_PARTE Chromosome undetermined scaffold_135, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00033260001 PE=4 SV=1
Length = 738

Score = 32.7 bits (73), Expect = 9.4
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3

Query: 306 YTYNKKITLVHRGMTH--VLEVKLKGESVPVVSAFAISSVIKNH 431
Y Y + + ++HR +T +L ++KG + +S F++SS++KN+
Sbjct: 102 YQYLRSLGIIHRNLTPLTILVQQIKGRIIIKISDFSVSSLLKNN 145