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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919228
Clone id YMU001_000122_F09
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000122_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAATCCTTGACCTTGACCATCAAGATTTTTTAACTCTGTTGCTGCTTCAGCTACAAAAG
AAGTCGTGAGGTTCAAGACCGGGAAGTTGAATAGCTTAGATACAAGATTAAAAACTGCTA
TGGACACCCCAACAGCAGCCAGCTCAACAGAACCTAGTCGCCCAATGAATGCAGTGTCCA
CCAGTGAAGCGAGGGGATCCGCTGTAAGAGCCAGTAGTGCTGGTAAAGCAATGGCTGCTA
TCTCCACTCCAAGGTCATCAGCCTTAAAAACATTGGTGGCACCTTTAACAAACGATAGTA
ACAAATTCCTGCCCTGACTCTTATCATCCTGAAGAGATGACGGGAGATTTTGATCGTCCT
CAGATGATGATATCATAGGGCTTGTCAACTCTTTGGAGGTTGTCTGCTCATTTGCGCATG
CATACCACCGTAATGCAGTATTACAGCTTCGCCGCCGCCTCCTCCAATACAATATTTTAG
ATTGACATTCTCTTTTACGCAGGGACTGAGCCTGAGTATTTGAATATCCTGACTGC
■■Homology search results ■■ -
sp_hit_id A1L1P9
Definition sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio
Align length 26
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919228|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F09.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS...    31   4.3  
sp|Q6FEY7|NORM_ACIAD Probable multidrug resistance protein norM ...    30   5.7  
sp|Q05913|T2FA_DROME General transcription factor IIF subunit 1 ...    30   9.7  

>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1
           OS=Danio rerio GN=slc47a1 PE=2 SV=1
          Length = 590

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 181 VDTAFIGRLGSVELAAVGVSIAVFNL 104
           V T F G LG  ELA V ++IAV N+
Sbjct: 76  VSTVFCGHLGKTELAGVALAIAVINV 101


>sp|Q6FEY7|NORM_ACIAD Probable multidrug resistance protein norM
           OS=Acinetobacter sp. (strain ADP1) GN=norM PE=3 SV=1
          Length = 449

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 181 VDTAFIGRLGSVELAAVGVSIAVFNLVSKLFNFPVLNLTTSFVAEA 44
           +DT   G L + +LAA+ V + ++  V  LF+  ++  TT  VAEA
Sbjct: 34  IDTIMAGHLSANDLAAIAVGVGLWMPVMLLFS-AIMIATTPLVAEA 78


>sp|Q05913|T2FA_DROME General transcription factor IIF subunit 1
           OS=Drosophila melanogaster GN=TfIIFalpha PE=1 SV=3
          Length = 577

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 84  KLNSLDTRLKTAMDTPTAASSTEPSRPMNAVST 182
           K+NSL + L TA DT  + +ST   RP N +ST
Sbjct: 468 KMNSLPSDL-TASDTSNSPTSTPAKRPKNEIST 499
tr_hit_id A9TSQ5
Definition tr|A9TSQ5|A9TSQ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 92
Score (bit) 96.3
E-value 9.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919228|Adiantum capillus-veneris mRNA, clone:
YMU001_000122_F09.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TSQ5|A9TSQ5_PHYPA Predicted protein OS=Physcomitrella paten...    96   9e-19
tr|A9RI15|A9RI15_PHYPA Predicted protein OS=Physcomitrella paten...    88   3e-16
tr|A9SKR3|A9SKR3_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|Q10PY7|Q10PY7_ORYSJ cDNA clone:J033050B03, full insert sequen...    81   4e-14
tr|Q10PY6|Q10PY6_ORYSJ MATE efflux family protein, putative, exp...    81   4e-14
tr|Q0DTY8|Q0DTY8_ORYSJ Os03g0216700 protein (Fragment) OS=Oryza ...    81   4e-14
tr|B8AQU3|B8AQU3_ORYSI Putative uncharacterized protein OS=Oryza...    81   4e-14
tr|B7FLW7|B7FLW7_MEDTR Putative uncharacterized protein OS=Medic...    81   4e-14
tr|A7PWC6|A7PWC6_VITVI Chromosome chr8 scaffold_34, whole genome...    80   7e-14
tr|A7M6X1|A7M6X1_HORVU Aluminum activated citrate transporter OS...    80   7e-14
tr|A7M6U2|A7M6U2_HORVU Aluminum activated citrate transporter OS...    80   7e-14
tr|A5C5Y8|A5C5Y8_VITVI Putative uncharacterized protein OS=Vitis...    80   7e-14
tr|A7NZR1|A7NZR1_VITVI Chromosome chr6 scaffold_3, whole genome ...    80   9e-14
tr|A5BC98|A5BC98_VITVI Putative uncharacterized protein OS=Vitis...    80   9e-14
tr|A7QFE9|A7QFE9_VITVI Chromosome chr8 scaffold_88, whole genome...    79   1e-13
tr|A7Q2A7|A7Q2A7_VITVI Chromosome chr13 scaffold_45, whole genom...    79   2e-13
tr|A5AUE1|A5AUE1_VITVI Putative uncharacterized protein OS=Vitis...    79   2e-13
tr|Q2QYU0|Q2QYU0_ORYSJ Os12g0106600 protein OS=Oryza sativa subs...    77   4e-13
tr|B8BNU1|B8BNU1_ORYSI Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|B2LUQ8|B2LUQ8_SOYBN Aluminum-activated citrate transporter OS...    77   4e-13
tr|A7XZS5|A7XZS5_SORBI MATE OS=Sorghum bicolor PE=2 SV=1               77   4e-13
tr|Q9SYD6|Q9SYD6_ARATH F11M15.20 protein OS=Arabidopsis thaliana...    76   1e-12
tr|Q84K71|Q84K71_ARATH Putative uncharacterized protein At2g3833...    76   1e-12
tr|O80918|O80918_ARATH Putative uncharacterized protein At2g3833...    76   1e-12
tr|A7Q2A6|A7Q2A6_VITVI Chromosome chr13 scaffold_45, whole genom...    75   2e-12
tr|A5AUE0|A5AUE0_VITVI Putative uncharacterized protein (Fragmen...    75   2e-12
tr|B8BIM6|B8BIM6_ORYSI Putative uncharacterized protein OS=Oryza...    75   3e-12
tr|A3CE70|A3CE70_ORYSJ Putative uncharacterized protein OS=Oryza...    75   3e-12
tr|Q8S6V6|Q8S6V6_ORYSJ Putative membrane protein OS=Oryza sativa...    73   8e-12
tr|Q8S6Q1|Q8S6Q1_ORYSJ Os10g0206800 protein OS=Oryza sativa subs...    73   8e-12

>tr|A9TSQ5|A9TSQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96644 PE=4 SV=1
          Length = 514

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 53/92 (57%), Positives = 63/92 (68%)
 Frame = -2

Query: 310 RNLLLSFVKGATNVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAV 131
           R+ L+   +   NVFKAD+LGVEI                  LVDTAFIG +G VELAAV
Sbjct: 28  RHPLIGLFENLRNVFKADELGVEIATIALPAFLALASDPLASLVDTAFIGHIGPVELAAV 87

Query: 130 GVSIAVFNLVSKLFNFPVLNLTTSFVAEAATE 35
           GVSI+VFNLVSK+FN P+LN+TTSFVAE A+E
Sbjct: 88  GVSISVFNLVSKMFNLPLLNITTSFVAEDASE 119


>tr|A9RI15|A9RI15_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114442 PE=4 SV=1
          Length = 572

 Score = 87.8 bits (216), Expect = 3e-16
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
 Frame = -2

Query: 319 SQGRNLLLS--FVKGATNVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSV 146
           S+G +L LS   +   +N+FKADDLG +I                  LVDTAFIG++G V
Sbjct: 41  SRGFSLTLSSELLCLVSNMFKADDLGKDIVMIALPAVLALAADPIASLVDTAFIGQIGPV 100

Query: 145 ELAAVGVSIAVFNLVSKLFNFPVLNLTTSFVAEAATE 35
           ELAAVGVSI+VFNLVSK+ N P+LN+TTSFVAE A+E
Sbjct: 101 ELAAVGVSISVFNLVSKVCNIPLLNVTTSFVAEDASE 137


>tr|A9SKR3|A9SKR3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_80731 PE=4 SV=1
          Length = 726

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 43/80 (53%), Positives = 56/80 (70%)
 Frame = -2

Query: 274 NVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLVSK 95
           NVF+AD++G EI                  LVD+AF+G +GSVEL A+GVSI++FNLVSK
Sbjct: 246 NVFEADEIGKEIANIAFPALLALAADPIASLVDSAFVGHIGSVELGAIGVSISIFNLVSK 305

Query: 94  LFNFPVLNLTTSFVAEAATE 35
           +FN P+LN+TTSFVAE A +
Sbjct: 306 MFNLPLLNITTSFVAEDAVQ 325


>tr|Q10PY7|Q10PY7_ORYSJ cDNA clone:J033050B03, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g11734 PE=2
           SV=1
          Length = 571

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 53/122 (43%), Positives = 70/122 (57%)
 Frame = -2

Query: 412 NEQTTSKELTSPMISSSEDDQNLPSSLQDDKSQGRNLLLSFVKGATNVFKADDLGVEIXX 233
           N    ++E T+   ++ ED   LP+         R  L  FV    +VFK D+LG E+  
Sbjct: 40  NGAAGAEEKTAAAAAAPED---LPAPAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLR 96

Query: 232 XXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLVSKLFNFPVLNLTTSFV 53
                           LVDTAFIGRLGSVE+AAVGVSIA+FN VSK+  +P++++TTSFV
Sbjct: 97  IAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVSVTTSFV 156

Query: 52  AE 47
           AE
Sbjct: 157 AE 158


>tr|Q10PY6|Q10PY6_ORYSJ MATE efflux family protein, putative,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g11734 PE=4 SV=1
          Length = 495

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 53/122 (43%), Positives = 70/122 (57%)
 Frame = -2

Query: 412 NEQTTSKELTSPMISSSEDDQNLPSSLQDDKSQGRNLLLSFVKGATNVFKADDLGVEIXX 233
           N    ++E T+   ++ ED   LP+         R  L  FV    +VFK D+LG E+  
Sbjct: 40  NGAAGAEEKTAAAAAAPED---LPAPAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLR 96

Query: 232 XXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLVSKLFNFPVLNLTTSFV 53
                           LVDTAFIGRLGSVE+AAVGVSIA+FN VSK+  +P++++TTSFV
Sbjct: 97  IAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVSVTTSFV 156

Query: 52  AE 47
           AE
Sbjct: 157 AE 158


>tr|Q0DTY8|Q0DTY8_ORYSJ Os03g0216700 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0216700 PE=4 SV=1
          Length = 627

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 53/122 (43%), Positives = 70/122 (57%)
 Frame = -2

Query: 412 NEQTTSKELTSPMISSSEDDQNLPSSLQDDKSQGRNLLLSFVKGATNVFKADDLGVEIXX 233
           N    ++E T+   ++ ED   LP+         R  L  FV    +VFK D+LG E+  
Sbjct: 96  NGAAGAEEKTAAAAAAPED---LPAPAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLR 152

Query: 232 XXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLVSKLFNFPVLNLTTSFV 53
                           LVDTAFIGRLGSVE+AAVGVSIA+FN VSK+  +P++++TTSFV
Sbjct: 153 IAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVSVTTSFV 212

Query: 52  AE 47
           AE
Sbjct: 213 AE 214


>tr|B8AQU3|B8AQU3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10537 PE=4 SV=1
          Length = 529

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 53/122 (43%), Positives = 70/122 (57%)
 Frame = -2

Query: 412 NEQTTSKELTSPMISSSEDDQNLPSSLQDDKSQGRNLLLSFVKGATNVFKADDLGVEIXX 233
           N    ++E T+   ++ ED   LP+         R  L  FV    +VFK D+LG E+  
Sbjct: 40  NGAAGAEEKTAAAAAAPED---LPAPAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLR 96

Query: 232 XXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLVSKLFNFPVLNLTTSFV 53
                           LVDTAFIGRLGSVE+AAVGVSIA+FN VSK+  +P++++TTSFV
Sbjct: 97  IAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVSVTTSFV 156

Query: 52  AE 47
           AE
Sbjct: 157 AE 158


>tr|B7FLW7|B7FLW7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 507

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = -2

Query: 301 LLSFVKGATNVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVS 122
           + +F K A  VFK DDLG EI                  LVDTAFIG+LG VELAAVGVS
Sbjct: 18  ICTFFKDARLVFKLDDLGREILSIALPAAMALTADPIASLVDTAFIGQLGPVELAAVGVS 77

Query: 121 IAVFNLVSKLFNFPVLNLTTSFVAE 47
           IA+FN  S++F FP++++TTSFVAE
Sbjct: 78  IALFNQASRIFIFPLVSVTTSFVAE 102


>tr|A7PWC6|A7PWC6_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025560001
           PE=4 SV=1
          Length = 476

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 44/81 (54%), Positives = 55/81 (67%)
 Frame = -2

Query: 280 ATNVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVSIAVFNLV 101
           A NVFK D+LG+EI                  L+DTAFIG +G+VELAAVGVSIAVFN V
Sbjct: 2   ARNVFKKDELGLEIAQIAFPAALALTADPIASLIDTAFIGHIGAVELAAVGVSIAVFNQV 61

Query: 100 SKLFNFPVLNLTTSFVAEAAT 38
           S++  FP++++TTSFVAE  T
Sbjct: 62  SRIAIFPLVSITTSFVAEEDT 82


>tr|A7M6X1|A7M6X1_HORVU Aluminum activated citrate transporter
           OS=Hordeum vulgare GN=HvMATE PE=4 SV=1
          Length = 555

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 45/85 (52%), Positives = 56/85 (65%)
 Frame = -2

Query: 301 LLSFVKGATNVFKADDLGVEIXXXXXXXXXXXXXXXXXXLVDTAFIGRLGSVELAAVGVS 122
           L  FV    +VFK D+LG E+                  LVDTAFIGRLGSVE+AAVGVS
Sbjct: 58  LYLFVMNIRSVFKLDELGSEVLRIAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVS 117

Query: 121 IAVFNLVSKLFNFPVLNLTTSFVAE 47
           IA+FN VSK+  +P++++TTSFVAE
Sbjct: 118 IAIFNQVSKVCIYPLVSVTTSFVAE 142